FFCP PHASE1:Hg19::chr4:74608589..74608602,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3576 | |EntrezGene=3576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6025 | |HGNC=6025 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-252bp_to_AJ227913_5end | |association_with_transcript=-252bp_to_AJ227913_5end | ||
|cluster_id=chr4:74608589..74608602,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_13_at_IL8_5end | |description=CAGE_peak_13_at_IL8_5end | ||
|id=chr4:74608589..74608602,+ | |id=chr4:74608589..74608602,+ | ||
|ontology_enrichment_celltype=CL:0002057!5.14e-46!42;CL:0000860!2.55e-42!45;CL:0000766!3.04e-39!76;CL:0002009!3.35e-32!65;CL:0002194!2.57e-31!63;CL:0000576!2.57e-31!63;CL:0000040!2.57e-31!63;CL:0000559!2.57e-31!63;CL:0000557!1.36e-30!71;CL:0000839!3.82e-29!70;CL:0000763!2.03e-27!112;CL:0000049!2.03e-27!112;CL:0000738!1.37e-19!140;CL:0002032!8.44e-16!165;CL:0000837!8.44e-16!165;CL:0000048!1.10e-15!430;CL:0000037!1.20e-15!172;CL:0000566!1.20e-15!172;CL:0000723!3.26e-15!436;CL:0000988!4.74e-15!182;CL:0000034!1.33e-14!444;CL:0002031!1.89e-14!124;CL:0002087!2.14e-14!119;CL:0000094!1.46e-11!8;CL:0000359!4.96e-11!32;CL:0002320!1.01e-10!365;CL:0000134!1.33e-10!358;CL:0000775!8.45e-09!3;CL:0000219!2.16e-08!390;CL:0002371!2.58e-08!591;CL:0000081!3.75e-08!11;CL:0002595!4.43e-08!5;CL:0000548!8.58e-08!679;CL:0000004!8.58e-08!679;CL:0000255!8.58e-08!679;CL:0000012!1.14e-07!682;CL:0000192!1.28e-07!42;CL:0000514!1.28e-07!42;CL:0002494!1.70e-07!16;CL:0000144!8.02e-07!625 | |ontology_enrichment_celltype=CL:0002057!5.14e-46!42;CL:0000860!2.55e-42!45;CL:0000766!3.04e-39!76;CL:0002009!3.35e-32!65;CL:0002194!2.57e-31!63;CL:0000576!2.57e-31!63;CL:0000040!2.57e-31!63;CL:0000559!2.57e-31!63;CL:0000557!1.36e-30!71;CL:0000839!3.82e-29!70;CL:0000763!2.03e-27!112;CL:0000049!2.03e-27!112;CL:0000738!1.37e-19!140;CL:0002032!8.44e-16!165;CL:0000837!8.44e-16!165;CL:0000048!1.10e-15!430;CL:0000037!1.20e-15!172;CL:0000566!1.20e-15!172;CL:0000723!3.26e-15!436;CL:0000988!4.74e-15!182;CL:0000034!1.33e-14!444;CL:0002031!1.89e-14!124;CL:0002087!2.14e-14!119;CL:0000094!1.46e-11!8;CL:0000359!4.96e-11!32;CL:0002320!1.01e-10!365;CL:0000134!1.33e-10!358;CL:0000775!8.45e-09!3;CL:0000219!2.16e-08!390;CL:0002371!2.58e-08!591;CL:0000081!3.75e-08!11;CL:0002595!4.43e-08!5;CL:0000548!8.58e-08!679;CL:0000004!8.58e-08!679;CL:0000255!8.58e-08!679;CL:0000012!1.14e-07!682;CL:0000192!1.28e-07!42;CL:0000514!1.28e-07!42;CL:0002494!1.70e-07!16;CL:0000144!8.02e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.20e-61;33!CL:0002057;1.20e-61;33!CL:0000473;5.41e-46;39!CL:0000234;5.41e-46;39!CL:0000576;3.90e-34;48!CL:0000766;4.10e-32;69!CL:0000094;2.95e-20;8!CL:0000775;4.94e-20;3!CL:0000763;5.01e-15;100!CL:0000081;1.11e-14;11!CL:0000771;2.98e-14;2!CL:0002087;1.41e-11;104!CL:0002393;8.67e-10;6!CL:0002397;8.67e-10;6!CL:0000738;3.41e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.12e-68,42;CL:0002057,5.12e-68,42;CL:0000473,1.03e-64,48;CL:0000234,1.03e-64,48;CL:0000766,6.78e-63,72;CL:0002194,7.08e-51,59;CL:0000576,7.08e-51,59;CL:0000040,7.08e-51,59;CL:0000559,7.08e-51,59;CL:0002009,4.33e-49,61;CL:0000839,4.32e-45,66;CL:0000557,2.32e-44,67;CL:0000763,1.82e-40,108;CL:0000049,1.82e-40,108;CL:0000738,3.73e-31,136;CL:0002032,1.49e-25,161;CL:0000837,1.49e-25,161;CL:0000037,2.80e-24,168;CL:0002087,4.04e-24,115;CL:0002031,6.20e-23,120;CL:0000988,8.64e-23,177;CL:0000094,2.78e-20,8;CL:0000775,4.35e-20,3;CL:0000081,1.06e-14,11;CL:0000771,3.08e-14,2;CL:0000134,1.11e-10,354;CL:0002320,2.29e-10,361;CL:0000048,1.15e-09,427;CL:0000723,1.88e-09,433;CL:0000219,2.93e-09,386;CL:0000034,3.54e-09,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.90e-50;42!CL:0000049;5.65e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.60e-26!80;UBERON:0001474!1.42e-23!86;UBERON:0003081!3.53e-23!216;UBERON:0002204!9.83e-22!167;UBERON:0002390!5.47e-21!102;UBERON:0003061!5.47e-21!102;UBERON:0004765!5.06e-20!101;UBERON:0001434!5.06e-20!101;UBERON:0002193!1.92e-19!112;UBERON:0002405!1.95e-17!115;UBERON:0000926!1.75e-10!448;UBERON:0004120!1.75e-10!448;UBERON:0006603!1.75e-10!448;UBERON:0002384!5.00e-10!375;UBERON:0001637!8.89e-09!42;UBERON:0003509!8.89e-09!42;UBERON:0004572!8.89e-09!42;UBERON:0003834!4.43e-08!5;UBERON:0001533!4.43e-08!5;UBERON:0004872!2.38e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.20e-38,76;UBERON:0001474,1.58e-35,82;UBERON:0004765,5.29e-32,90;UBERON:0002405,7.76e-31,93;UBERON:0002390,4.76e-29,98;UBERON:0003061,4.76e-29,98;UBERON:0001434,2.21e-28,100;UBERON:0002193,5.79e-26,108;UBERON:0002204,1.78e-18,167;UBERON:0003081,9.18e-16,203;UBERON:0002384,6.13e-10,371;UBERON:0000926,2.65e-09,315;UBERON:0004120,2.65e-09,315;UBERON:0006603,2.65e-09,315 | |||
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| ||
|short_description=p13@IL8 | |short_description=p13@IL8 | ||
}} | }} |
Latest revision as of 14:20, 18 September 2015
Short description: | p13@IL8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_IL8_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -252bp_to_AJ227913_5end |
EntrezGene: | IL8 |
HGNC: | 6025 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.12e-68 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.12e-68 | 42 |
defensive cell | 1.03e-64 | 48 |
phagocyte | 1.03e-64 | 48 |
myeloid leukocyte | 6.78e-63 | 72 |
monopoietic cell | 7.08e-51 | 59 |
monocyte | 7.08e-51 | 59 |
monoblast | 7.08e-51 | 59 |
promonocyte | 7.08e-51 | 59 |
macrophage dendritic cell progenitor | 4.33e-49 | 61 |
myeloid lineage restricted progenitor cell | 4.32e-45 | 66 |
granulocyte monocyte progenitor cell | 2.32e-44 | 67 |
myeloid cell | 1.82e-40 | 108 |
common myeloid progenitor | 1.82e-40 | 108 |
leukocyte | 3.73e-31 | 136 |
hematopoietic oligopotent progenitor cell | 1.49e-25 | 161 |
hematopoietic multipotent progenitor cell | 1.49e-25 | 161 |
hematopoietic stem cell | 2.80e-24 | 168 |
nongranular leukocyte | 4.04e-24 | 115 |
hematopoietic lineage restricted progenitor cell | 6.20e-23 | 120 |
hematopoietic cell | 8.64e-23 | 177 |
granulocyte | 2.78e-20 | 8 |
neutrophil | 4.35e-20 | 3 |
blood cell | 1.06e-14 | 11 |
eosinophil | 3.08e-14 | 2 |
mesenchymal cell | 1.11e-10 | 354 |
connective tissue cell | 2.29e-10 | 361 |
multi fate stem cell | 1.15e-09 | 427 |
somatic stem cell | 1.88e-09 | 433 |
motile cell | 2.93e-09 | 386 |
stem cell | 3.54e-09 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.20e-38 | 76 |
bone element | 1.58e-35 | 82 |
skeletal element | 5.29e-32 | 90 |
immune system | 7.76e-31 | 93 |
hematopoietic system | 4.76e-29 | 98 |
blood island | 4.76e-29 | 98 |
skeletal system | 2.21e-28 | 100 |
hemolymphoid system | 5.79e-26 | 108 |
musculoskeletal system | 1.78e-18 | 167 |
lateral plate mesoderm | 9.18e-16 | 203 |
connective tissue | 6.13e-10 | 371 |
mesoderm | 2.65e-09 | 315 |
mesoderm-derived structure | 2.65e-09 | 315 |
presumptive mesoderm | 2.65e-09 | 315 |