FFCP PHASE1:Hg19::chr12:66218598..66218645,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:66218598..66218645,+
|short_description=p2@HMGA2
|description=CAGE_peak_2_at_HMGA2_5end
|association_with_transcript=7bp_to_ENST00000545998_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=7bp_to_ENST00000545998_5end | |||
|cluster_id=chr12:66218598..66218645,+ | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_2_at_HMGA2_5end | |||
|id=chr12:66218598..66218645,+ | |||
|ontology_enrichment_celltype=CL:0000055!9.84e-32!180;CL:0002321!3.83e-31!248;CL:0000220!1.42e-30!246;CL:0000548!5.43e-20!679;CL:0000004!5.43e-20!679;CL:0000255!5.43e-20!679;CL:0000012!5.77e-20!682;CL:0002371!8.47e-18!591;CL:0000680!3.59e-17!57;CL:0000056!3.59e-17!57;CL:0000355!3.59e-17!57;CL:0000183!5.51e-17!59;CL:0000144!8.81e-17!625;CL:0000187!4.97e-16!54;CL:0000393!6.23e-16!60;CL:0000211!6.23e-16!60;CL:0000066!5.37e-15!254;CL:0000222!8.05e-15!119;CL:0000192!1.11e-12!42;CL:0000514!1.11e-12!42;CL:0000057!1.54e-11!75;CL:0000359!8.85e-11!32;CL:0000003!8.53e-10!722;CL:0000223!1.20e-08!59;CL:0002076!1.32e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.32e-10;32!CL:0000187;3.99e-10;55!CL:0000192;5.67e-10;43!CL:0000393;8.67e-09;61!CL:0000211;8.67e-09;61!CL:0002076;4.88e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.44e-32,250;CL:0000680,2.62e-18,58;CL:0000056,2.62e-18,58;CL:0000355,2.62e-18,58;CL:0000187,4.14e-17,55;CL:0000393,5.31e-17,61;CL:0000211,5.31e-17,61;CL:0000222,2.98e-15,121;CL:0000066,9.36e-15,253;CL:0000192,1.35e-13,43;CL:0000514,1.35e-13,43;CL:0000057,2.65e-12,76;CL:0000359,3.33e-11,32;CL:0000223,6.41e-09,58;CL:0002076,1.25e-08,42 | |||
|ontology_enrichment_development_v019=CL:0000355;5.20e-10;58!CL:0000514;5.67e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!5.56e-22!143;UBERON:0000914!4.04e-21!83;UBERON:0002329!4.04e-21!83;UBERON:0003077!4.04e-21!83;UBERON:0003059!4.04e-21!83;UBERON:0007282!4.04e-21!83;UBERON:0009618!4.04e-21!83;UBERON:0007285!4.04e-21!83;UBERON:0000486!7.96e-21!82;UBERON:0004290!9.55e-18!70;UBERON:0002100!1.04e-17!216;UBERON:0000490!7.64e-17!138;UBERON:0000475!4.23e-16!365;UBERON:0003104!1.14e-15!238;UBERON:0009142!1.14e-15!238;UBERON:0001134!6.96e-15!61;UBERON:0002036!6.96e-15!61;UBERON:0003082!6.96e-15!61;UBERON:0000119!9.94e-15!312;UBERON:0000481!1.31e-14!347;UBERON:0002385!7.09e-14!63;UBERON:0001015!7.09e-14!63;UBERON:0000383!7.09e-14!63;UBERON:0000483!1.09e-13!309;UBERON:0003914!1.70e-13!118;UBERON:0002049!1.72e-13!79;UBERON:0007798!1.72e-13!79;UBERON:0003102!3.76e-12!95;UBERON:0000468!2.76e-10!659;UBERON:0001637!3.19e-10!42;UBERON:0003509!3.19e-10!42;UBERON:0004572!3.19e-10!42;UBERON:0001444!5.94e-10!48;UBERON:0001981!8.63e-10!60;UBERON:0007500!8.63e-10!60;UBERON:0004537!8.63e-10!60;UBERON:0006965!8.63e-10!60;UBERON:0000055!2.13e-09!69;UBERON:0004872!8.97e-09!84;UBERON:0000922!1.71e-08!612;UBERON:0004573!3.10e-08!33;UBERON:0004571!3.10e-08!33;UBERON:0000467!3.72e-08!625;UBERON:0000480!5.76e-08!626;UBERON:0005085!8.56e-08!29;UBERON:0004535!9.17e-08!110;UBERON:0002199!1.44e-07!45;UBERON:0002416!1.44e-07!45;UBERON:0002050!1.70e-07!605;UBERON:0005423!1.70e-07!605;UBERON:0000923!1.70e-07!604;UBERON:0005291!1.70e-07!604;UBERON:0006598!1.70e-07!604;UBERON:0002532!1.70e-07!604;UBERON:0002097!4.46e-07!40;UBERON:0001009!4.60e-07!113;UBERON:0000019!5.60e-07!19;UBERON:0000047!5.60e-07!19;UBERON:0004088!5.60e-07!19;UBERON:0003072!5.60e-07!19;UBERON:0003071!5.60e-07!19;UBERON:0004128!5.60e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0010371;1.00e-07;31!UBERON:0004573;1.08e-07;33!UBERON:0004571;1.08e-07;33!UBERON:0003914;2.05e-07;74!UBERON:0001637;2.13e-07;42!UBERON:0003509;2.13e-07;42!UBERON:0004572;2.13e-07;42!UBERON:0001444;3.07e-07;48!UBERON:0002049;3.19e-07;75!UBERON:0007798;3.19e-07;75!UBERON:0000019;6.11e-07;19!UBERON:0000047;6.11e-07;19!UBERON:0004088;6.11e-07;19!UBERON:0010230;6.11e-07;19!UBERON:0007500;9.25e-07;56!UBERON:0001981;9.25e-07;56!UBERON:0004537;9.25e-07;56!UBERON:0002385;9.94e-07;31!UBERON:0001015;9.94e-07;31!UBERON:0000383;9.94e-07;31 | |||
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|phase1_expression=3.27021082687002,3.21150785836475,0.986680828671798,0,0.893922188854576,0.872338524100369,2.53299878168311,18.9515962028049,2.87304191019822,12.0409628885739,22.3296373751177,24.9023164228396,13.4521158896511,36.7586068291338,36.4537113300707,82.0236678671166,93.4176518437164,75.2219393098994,63.4312638427659,17.6063113049807,24.8880843317989,1.88072832886853,9.73202356245593,9.71808418017478,21.7188766499009,0.382067028739756,0.57470412614962,0,0,0,0,34.0185853057203,70.1809790753323,26.9920427421755,0,0,1.17440175733939,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,1.32171328579026,1.12101712596307,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,14.75541891348,3.45228916977532,12.2889311810753,4.51204119572301,2.75208386025565,26.2444362526863,33.5778060508819,70.4284387872305,80.9312300738358,78.0851244811891,0.0654895377488563,34.972347676084,26.3256954376945,0,0,0,0,0,0,9.54059555360184,12.9035189265919,14.579901067519,16.9592382577203,23.9114678639646,18.1577907680445,18.809546988313,17.313922864345,20.2786769731425,7.36385348082274,6.0424397566372,4.56163263431108,2.4406205754817,23.8981002224815,21.8738325928075,25.8076214740991,35.9246996201872,42.2293051812458,33.7296602424943,18.0360475317944,17.7705691612495,0,0,15.2632918249887,14.9091585508596,22.6668615879598,69.1175923845002,51.3437551140377,31.5654860156538,8.97084160227691,27.7547388897233,21.7067442607101,26.1417269735804,34.0818000336311,50.8366518682857,23.9144735678992,42.0608424870399,17.5741073875347,84.5953808210169,23.9598165048669,104.763525066813,62.2402842811954,106.998016227335,131.1810534599,56.1423970950956,169.265689255616,27.3813320115778,23.7600571456411,28.1884299377555,10.9219363432563,10.0606539854273,97.1299377514962,154.646490561748,75.9155676426661,23.7047915275652,22.0671212975294,24.7892797195885,40.8355859376076,43.9504607437712,8.96941033037983,11.4443226626163,31.5095650888622,20.4044007892109,14.6855107826009,6.32797311527405,34.7679244417008,6.33340533547791,33.3212582002231,12.1505866207835,19.2358807614386,18.4604988108639,11.8887475908616,19.3299075233956,58.7512993616422,67.0955456653453,61.0893788178578,28.1759261159365,33.1324420803713,43.6889225189389,45.0925589316861,42.1375820962299,20.0737547491706,14.0804579096834,9.64861407289328,24.8642858434465,26.0046039697908,12.271951188383,0,0,0,0,0,0,0,0,0,5.90524363699719,54.6942917833439,2.4694440679884,4.41026134156626,0,0,1.77236972004421,3.97316789473185,34.4367627920718,70.6859378429925,46.8633718694831,23.6043681841001,37.4973067095383,157.585533659817,29.3227474779292,31.1980435583874,44.7427160278347,45.328788345255,39.0970951805286,10.8274835820805,14.3525508898749,5.89787871927255,0,0,0.246217006087397,0,0,26.2454735162976,46.8670137674818,43.8085050478974,39.8535426027675,54.0579125635969,22.6195780707475,0,0,0,0,0,0.507983154337352,3.4378958300245,2.34434894420094,3.4214489204541,4.73006466435288,1.8020583470635,0,127.38091181633,51.4432881223271,187.159305415064,77.1752143073933,7.15312891703765,42.2651376278,13.5628439458284,18.7213386440459,62.2441845714384,156.034045225606,97.5105175198924,4.71827379071887,7.5967024754802,28.8134117873269,27.3618394806737,2.13235169245527,51.4768717406729,7.23454504943007,13.9445353376047,2.19940580600526,0,0,0,23.0039861271919,5.7430967917057,164.032440796826,32.4310126935377,72.5331418602853,47.4511552585723,0,0,0,0,8.13102797511883,5.20559415430487,9.27946575333234,3.68535783735567,8.29320377149112,0,0,0,18.7717982330284,72.5247255536532,77.8530618018241,5.61521326133179,18.1997568573105,4.41566762095017,10.8941515943223,21.9690652801235,13.6444502433591,15.5209606938757,55.7949502769767,35.2145111914653,85.4934766365935,34.0694013985169,42.5497845525461,0,0,0,2.72814814301633,16.6435439510497,16.0266855464731,2.23297027036899,3.22270143904931,1.96462066103151,2.69092213436972,1.53512174720011,3.21707842287215,0,78.338524451749,37.2879623157567,51.9864897567412,100.735359261623,51.248776900842,28.0393923052564,46.7180075806654,14.8250392186793,5.51109351190112,46.0690655056994,9.70320670699738,56.3999516134265,203.166459281446,29.0209414595436,40.918982902913,197.698200916356,10.2360045663807,19.9009635173523,61.3201201730076,24.6763604304463,29.2622152547361,17.5591420849199,19.1157204783779,14.1282921517883,53.953815888045,0.438519753291869,1.3071772551245,31.5433653893159,24.9291130731776,39.3707857543807,0,1.55668090191184,1.23764249880882,35.0301978177665,43.5540364844469,4.82051789532479,55.2956508630938,44.9821961974762,40.8319774771505,127.085319830737,61.8740610441256,52.7860765847792,78.8346303598933,13.9780295965378,27.4372959499224,32.4801213847029,162.323370293111,13.4539848537881,66.4729135495119,88.1474571125792,24.396304455621,33.5756602391937,19.1630170914128,28.70778873847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| ||
|short_description=p2@HMGA2 | |||
}} | }} |
Latest revision as of 23:27, 19 September 2015
Short description: | p2@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | 7bp_to_ENST00000545998_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.44e-32 | 250 |
muscle precursor cell | 2.62e-18 | 58 |
myoblast | 2.62e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.62e-18 | 58 |
muscle cell | 4.14e-17 | 55 |
electrically responsive cell | 5.31e-17 | 61 |
electrically active cell | 5.31e-17 | 61 |
mesodermal cell | 2.98e-15 | 121 |
epithelial cell | 9.36e-15 | 253 |
smooth muscle cell | 1.35e-13 | 43 |
smooth muscle myoblast | 1.35e-13 | 43 |
fibroblast | 2.65e-12 | 76 |
vascular associated smooth muscle cell | 3.33e-11 | 32 |
endodermal cell | 6.41e-09 | 58 |
endo-epithelial cell | 1.25e-08 | 42 |