FFCP PHASE1:Hg19::chr5:54281153..54281165,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=180bp_to_AB590689_5end | |association_with_transcript=180bp_to_AB590689_5end | ||
|cluster_id=chr5:54281153..54281165,- | |||
|coexpression_cluster_id=C1278 | |||
|description=CAGE_peak_1_at_AB590689_5end | |description=CAGE_peak_1_at_AB590689_5end | ||
|id=chr5:54281153..54281165,- | |id=chr5:54281153..54281165,- | ||
|ontology_enrichment_celltype=CL:0000222!7.88e-25!119;CL:0000115!6.09e-24!35;CL:0002139!2.35e-23!24;CL:0002078!6.15e-20!44;CL:0000359!4.97e-19!32;CL:0000071!6.68e-18!18;CL:0002546!6.68e-18!18;CL:0000213!1.06e-15!57;CL:0000215!1.06e-15!57;CL:0000192!2.16e-13!42;CL:0000514!2.16e-13!42;CL:0002539!1.89e-11!10;CL:0000680!4.10e-11!57;CL:0000056!4.10e-11!57;CL:0000355!4.10e-11!57;CL:0000187!1.95e-09!54;CL:0002595!1.95e-09!5;CL:0000183!2.13e-09!59;CL:0000220!9.30e-09!246;CL:0002321!1.33e-08!248;CL:0000055!1.33e-08!180;CL:0002592!2.34e-08!3;CL:0002144!3.74e-08!3;CL:0000393!4.49e-08!60;CL:0000211!4.49e-08!60;CL:0002582!7.74e-08!3;CL:0002618!8.72e-08!3;CL:1000413!3.01e-07!9;CL:0005020!5.32e-07!6;CL:0002138!5.32e-07!6;CL:0005022!5.32e-07!6;CL:0002543!8.93e-07!6 | |ontology_enrichment_celltype=CL:0000222!7.88e-25!119;CL:0000115!6.09e-24!35;CL:0002139!2.35e-23!24;CL:0002078!6.15e-20!44;CL:0000359!4.97e-19!32;CL:0000071!6.68e-18!18;CL:0002546!6.68e-18!18;CL:0000213!1.06e-15!57;CL:0000215!1.06e-15!57;CL:0000192!2.16e-13!42;CL:0000514!2.16e-13!42;CL:0002539!1.89e-11!10;CL:0000680!4.10e-11!57;CL:0000056!4.10e-11!57;CL:0000355!4.10e-11!57;CL:0000187!1.95e-09!54;CL:0002595!1.95e-09!5;CL:0000183!2.13e-09!59;CL:0000220!9.30e-09!246;CL:0002321!1.33e-08!248;CL:0000055!1.33e-08!180;CL:0002592!2.34e-08!3;CL:0002144!3.74e-08!3;CL:0000393!4.49e-08!60;CL:0000211!4.49e-08!60;CL:0002582!7.74e-08!3;CL:0002618!8.72e-08!3;CL:1000413!3.01e-07!9;CL:0005020!5.32e-07!6;CL:0002138!5.32e-07!6;CL:0005022!5.32e-07!6;CL:0002543!8.93e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002595;6.17e-27;5!CL:0002139;3.28e-20;24!CL:0002593;1.43e-17;2!CL:0000115;1.17e-16;36!CL:0000071;1.24e-15;18!CL:0000359;5.30e-14;32!CL:0002592;1.25e-11;3!CL:0000213;1.62e-09;58!CL:0000215;1.62e-09;58!CL:0002078;3.17e-09;45!CL:1000413;7.83e-09;9!CL:0000192;3.22e-08;43!CL:0002188;2.55e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,6.82e-27,5;CL:0000222,1.47e-20,121;CL:0000115,1.56e-20,36;CL:0002139,3.00e-20,24;CL:0002593,1.62e-17,2;CL:0002078,4.08e-16,45;CL:0000071,1.33e-15,18;CL:0002546,1.33e-15,18;CL:0000359,3.49e-15,32;CL:0000213,1.04e-14,58;CL:0000215,1.04e-14,58;CL:0002592,1.36e-11,3;CL:0000192,5.00e-11,43;CL:0000514,5.00e-11,43;CL:0002321,3.29e-09,250;CL:1000413,7.53e-09,9;CL:0000187,2.19e-08,55;CL:0000680,6.75e-08,58;CL:0000056,6.75e-08,58;CL:0000355,6.75e-08,58;CL:0000393,1.86e-07,61;CL:0000211,1.86e-07,61;CL:0002188,2.85e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002546;1.24e-15;18!CL:0000514;3.22e-08;43!CL:0000222;5.65e-07;121 | |||
|ontology_enrichment_disease=DOID:0060072!7.88e-11!4;DOID:0060084!1.02e-08!3;DOID:127!1.02e-08!3 | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.25e-11;3!DOID:127;1.25e-11;3!DOID:3112;3.53e-09;1!DOID:0060072;6.09e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.92e-12,3;DOID:127,7.92e-12,3;DOID:0060072,4.33e-09,4;DOID:3112,4.50e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000055!4.18e-38!69;UBERON:0001981!8.98e-35!60;UBERON:0007500!8.98e-35!60;UBERON:0004537!8.98e-35!60;UBERON:0006965!8.98e-35!60;UBERON:0002049!6.17e-32!79;UBERON:0007798!6.17e-32!79;UBERON:0001637!8.00e-29!42;UBERON:0003509!8.00e-29!42;UBERON:0004572!8.00e-29!42;UBERON:0004573!7.01e-26!33;UBERON:0004571!7.01e-26!33;UBERON:0004872!2.46e-25!84;UBERON:0004535!1.09e-22!110;UBERON:0001009!8.36e-22!113;UBERON:0003914!4.19e-19!118;UBERON:0001986!6.68e-18!18;UBERON:0004638!6.68e-18!18;UBERON:0004852!6.68e-18!18;UBERON:0006914!2.89e-14!25;UBERON:0000487!4.23e-14!22;UBERON:0000490!7.39e-14!138;UBERON:0004237!1.89e-11!10;UBERON:0004695!1.89e-11!10;UBERON:0002111!1.89e-11!10;UBERON:0004178!1.89e-11!10;UBERON:0001134!4.58e-10!61;UBERON:0002036!4.58e-10!61;UBERON:0003082!4.58e-10!61;UBERON:0000025!6.80e-10!194;UBERON:0000947!7.16e-10!21;UBERON:0010191!7.16e-10!21;UBERON:0004111!9.15e-10!241;UBERON:0002385!1.36e-09!63;UBERON:0001015!1.36e-09!63;UBERON:0000383!1.36e-09!63;UBERON:0003834!1.95e-09!5;UBERON:0001533!1.95e-09!5;UBERON:0000477!7.61e-09!286;UBERON:0003513!1.45e-08!8;UBERON:0001621!2.34e-08!3;UBERON:0003498!3.49e-08!5;UBERON:0005985!3.49e-08!5;UBERON:0004290!3.64e-08!70;UBERON:0001915!3.74e-08!3;UBERON:0001982!3.74e-08!3;UBERON:0000486!5.16e-08!82;UBERON:0003081!2.80e-07!216;UBERON:0001135!2.98e-07!15;UBERON:0003915!3.01e-07!9;UBERON:0004700!3.01e-07!9;UBERON:0001917!3.01e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;6.17e-27;5!UBERON:0001533;6.17e-27;5!UBERON:0003513;2.57e-19;7!UBERON:0001637;1.80e-18;42!UBERON:0003509;1.80e-18;42!UBERON:0004572;1.80e-18;42!UBERON:0002456;1.43e-17;2!UBERON:0004573;1.98e-16;33!UBERON:0004571;1.98e-16;33!UBERON:0004638;1.24e-15;18!UBERON:0001986;1.24e-15;18!UBERON:0004852;1.24e-15;18!UBERON:0000055;2.48e-15;65!UBERON:0003914;5.44e-14;74!UBERON:0007500;6.64e-14;56!UBERON:0001981;6.64e-14;56!UBERON:0004537;6.64e-14;56!UBERON:0002049;7.91e-13;75!UBERON:0007798;7.91e-13;75!UBERON:0000487;1.04e-12;22!UBERON:0003498;1.25e-11;3!UBERON:0005985;1.25e-11;3!UBERON:0001621;1.25e-11;3!UBERON:0006914;3.98e-11;25!UBERON:0000025;2.45e-09;93!UBERON:0003915;7.83e-09;9!UBERON:0004700;7.83e-09;9!UBERON:0001917;7.83e-09;9!UBERON:0000490;1.15e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.24e-27,68;UBERON:0003834,6.82e-27,5;UBERON:0001533,6.82e-27,5;UBERON:0007500,2.94e-24,59;UBERON:0001981,2.94e-24,59;UBERON:0004537,2.94e-24,59;UBERON:0006965,2.94e-24,59;UBERON:0002049,1.68e-23,78;UBERON:0007798,1.68e-23,78;UBERON:0001637,1.27e-21,42;UBERON:0003509,1.27e-21,42;UBERON:0004572,1.27e-21,42;UBERON:0003513,2.76e-19,7;UBERON:0004573,1.23e-18,33;UBERON:0004571,1.23e-18,33;UBERON:0002456,1.62e-17,2;UBERON:0004872,1.60e-16,83;UBERON:0004535,5.31e-16,109;UBERON:0004638,1.33e-15,18;UBERON:0001986,1.33e-15,18;UBERON:0004852,1.33e-15,18;UBERON:0001009,1.70e-15,112;UBERON:0003914,1.04e-14,117;UBERON:0000487,1.10e-12,22;UBERON:0001621,1.36e-11,3;UBERON:0006914,4.17e-11,25;UBERON:0000490,1.65e-09,148;UBERON:0000025,5.54e-09,192;UBERON:0003915,7.53e-09,9;UBERON:0004700,7.53e-09,9;UBERON:0001917,7.53e-09,9;UBERON:0007503,9.43e-09,78;UBERON:0004111,1.14e-08,240;UBERON:0001134,2.56e-07,62;UBERON:0002036,2.56e-07,62;UBERON:0003082,2.56e-07,62;UBERON:0003498,2.68e-07,5;UBERON:0005985,2.68e-07,5;UBERON:0003081,3.40e-07,203;UBERON:0002385,4.68e-07,64;UBERON:0001015,4.68e-07,64;UBERON:0000383,4.68e-07,64 | |||
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|short_description=p1@AB590689 | |short_description=p1@AB590689 | ||
}} | }} |
Latest revision as of 15:15, 30 July 2015
Short description: | p1@AB590689 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AB590689_5end |
Coexpression cluster: | C1278_Smooth_Endothelial_osteosarcoma_schwannoma_large_Renal_Lymphatic |
Association with transcript: | 180bp_to_AB590689_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 6.82e-27 | 5 |
mesodermal cell | 1.47e-20 | 121 |
endothelial cell | 1.56e-20 | 36 |
endothelial cell of vascular tree | 3.00e-20 | 24 |
smooth muscle cell of the internal thoracic artery | 1.62e-17 | 2 |
meso-epithelial cell | 4.08e-16 | 45 |
blood vessel endothelial cell | 1.33e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.33e-15 | 18 |
vascular associated smooth muscle cell | 3.49e-15 | 32 |
lining cell | 1.04e-14 | 58 |
barrier cell | 1.04e-14 | 58 |
smooth muscle cell of the coronary artery | 1.36e-11 | 3 |
smooth muscle cell | 5.00e-11 | 43 |
smooth muscle myoblast | 5.00e-11 | 43 |
embryonic cell | 3.29e-09 | 250 |
endothelial cell of artery | 7.53e-09 | 9 |
muscle cell | 2.19e-08 | 55 |
muscle precursor cell | 6.75e-08 | 58 |
myoblast | 6.75e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.75e-08 | 58 |
electrically responsive cell | 1.86e-07 | 61 |
electrically active cell | 1.86e-07 | 61 |
glomerular endothelial cell | 2.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.92e-12 | 3 |
leiomyoma | 7.92e-12 | 3 |
benign neoplasm | 4.33e-09 | 4 |
papillary adenocarcinoma | 4.50e-09 | 1 |