FFCP PHASE1:Hg19::chr20:21538047..21538060,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:21538047..21538060,+ | |||
|coexpression_cluster_id=C1865 | |||
|description=CAGE_peak_at_chr20:21538047..21538060,+ | |description=CAGE_peak_at_chr20:21538047..21538060,+ | ||
|id=chr20:21538047..21538060,+ | |id=chr20:21538047..21538060,+ | ||
|ontology_enrichment_celltype=CL:0000791!3.53e-34!18;CL:0000789!3.53e-34!18;CL:0002420!3.53e-34!18;CL:0002419!3.53e-34!18;CL:0000790!3.53e-34!18;CL:0000084!4.18e-30!25;CL:0000827!4.18e-30!25;CL:0000838!1.55e-26!52;CL:0000542!6.81e-26!53;CL:0000051!6.81e-26!53;CL:0000625!6.14e-18!11;CL:0002087!1.76e-17!119;CL:0000624!4.78e-16!6;CL:0000080!2.86e-15!6;CL:0000738!1.55e-14!140;CL:0002031!4.40e-13!124;CL:0000988!1.48e-11!182;CL:0000037!4.00e-10!172;CL:0000566!4.00e-10!172;CL:0000898!2.76e-09!3;CL:0002032!1.37e-08!165;CL:0000837!1.37e-08!165;CL:0000842!4.72e-08!3;CL:0000815!7.40e-07!2;CL:0000792!7.40e-07!2;CL:0002677!7.40e-07!2 | |ontology_enrichment_celltype=CL:0000791!3.53e-34!18;CL:0000789!3.53e-34!18;CL:0002420!3.53e-34!18;CL:0002419!3.53e-34!18;CL:0000790!3.53e-34!18;CL:0000084!4.18e-30!25;CL:0000827!4.18e-30!25;CL:0000838!1.55e-26!52;CL:0000542!6.81e-26!53;CL:0000051!6.81e-26!53;CL:0000625!6.14e-18!11;CL:0002087!1.76e-17!119;CL:0000624!4.78e-16!6;CL:0000080!2.86e-15!6;CL:0000738!1.55e-14!140;CL:0002031!4.40e-13!124;CL:0000988!1.48e-11!182;CL:0000037!4.00e-10!172;CL:0000566!4.00e-10!172;CL:0000898!2.76e-09!3;CL:0002032!1.37e-08!165;CL:0000837!1.37e-08!165;CL:0000842!4.72e-08!3;CL:0000815!7.40e-07!2;CL:0000792!7.40e-07!2;CL:0002677!7.40e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.67e-46;18!CL:0000789;1.67e-46;18!CL:0002419;1.67e-46;18!CL:0000084;2.26e-38;25!CL:0000625;1.64e-22;11!CL:0000624;5.20e-22;6!CL:0000898;5.07e-17;3!CL:0000815;2.62e-12;2!CL:0000792;2.62e-12;2!CL:0002677;2.62e-12;2!CL:0000542;3.92e-11;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.59e-46,18;CL:0000789,1.59e-46,18;CL:0002420,1.59e-46,18;CL:0002419,1.59e-46,18;CL:0000790,1.59e-46,18;CL:0000084,2.18e-38,25;CL:0000827,2.18e-38,25;CL:0000625,1.60e-22,11;CL:0000624,3.59e-22,6;CL:0000838,1.41e-19,52;CL:0000542,3.81e-19,53;CL:0000051,3.81e-19,53;CL:0000898,3.38e-17,3;CL:0000815,2.70e-12,2;CL:0000792,2.70e-12,2;CL:0002677,2.70e-12,2;CL:0000893,3.40e-11,2;CL:0002489,3.40e-11,2;CL:0000809,3.40e-11,2;CL:0000808,3.40e-11,2;CL:0000894,3.40e-11,2;CL:0000806,3.40e-11,2;CL:0000807,3.40e-11,2;CL:0000805,3.40e-11,2;CL:0002425,3.40e-11,2;CL:0002087,3.66e-08,115;CL:0000738,2.13e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;1.67e-46;18!CL:0002425;3.40e-11;2!CL:0000051;3.92e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.74e-26!15;UBERON:0000179!1.74e-26!15;UBERON:0000463!1.74e-26!15;UBERON:0002370!7.00e-10!4;UBERON:0005058!7.00e-10!4;UBERON:0009113!7.00e-10!4;UBERON:0003295!7.00e-10!4;UBERON:0005562!7.00e-10!4;UBERON:0002193!8.71e-09!112;UBERON:0002390!2.04e-08!102;UBERON:0003061!2.04e-08!102;UBERON:0004177!2.82e-08!7 | |ontology_enrichment_uberon=UBERON:0000178!1.74e-26!15;UBERON:0000179!1.74e-26!15;UBERON:0000463!1.74e-26!15;UBERON:0002370!7.00e-10!4;UBERON:0005058!7.00e-10!4;UBERON:0009113!7.00e-10!4;UBERON:0003295!7.00e-10!4;UBERON:0005562!7.00e-10!4;UBERON:0002193!8.71e-09!112;UBERON:0002390!2.04e-08!102;UBERON:0003061!2.04e-08!102;UBERON:0004177!2.82e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.76e-16;15!UBERON:0000179;2.76e-16;15!UBERON:0000463;2.76e-16;15!UBERON:0002390;6.31e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.93e-16,15;UBERON:0000179,2.93e-16,15;UBERON:0000463,2.93e-16,15 | |||
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| ||
|short_description=p@chr20:21538047..21538060,+ | |short_description=p@chr20:21538047..21538060,+ | ||
}} | }} |
Latest revision as of 12:24, 28 July 2015
Short description: | p@chr20:21538047..21538060, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:21538047..21538060, + |
Coexpression cluster: | C1865_adult_CD4_CD8_cord_lymphangiectasia_B_xeroderma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.59e-46 | 18 |
alpha-beta T cell | 1.59e-46 | 18 |
immature T cell | 1.59e-46 | 18 |
mature T cell | 1.59e-46 | 18 |
immature alpha-beta T cell | 1.59e-46 | 18 |
T cell | 2.18e-38 | 25 |
pro-T cell | 2.18e-38 | 25 |
CD8-positive, alpha-beta T cell | 1.60e-22 | 11 |
CD4-positive, alpha-beta T cell | 3.59e-22 | 6 |
lymphoid lineage restricted progenitor cell | 1.41e-19 | 52 |
lymphocyte | 3.81e-19 | 53 |
common lymphoid progenitor | 3.81e-19 | 53 |
naive T cell | 3.38e-17 | 3 |
regulatory T cell | 2.70e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.70e-12 | 2 |
naive regulatory T cell | 2.70e-12 | 2 |
thymocyte | 3.40e-11 | 2 |
double negative thymocyte | 3.40e-11 | 2 |
double-positive, alpha-beta thymocyte | 3.40e-11 | 2 |
DN4 thymocyte | 3.40e-11 | 2 |
DN1 thymic pro-T cell | 3.40e-11 | 2 |
DN2 thymocyte | 3.40e-11 | 2 |
DN3 thymocyte | 3.40e-11 | 2 |
immature single positive thymocyte | 3.40e-11 | 2 |
early T lineage precursor | 3.40e-11 | 2 |
nongranular leukocyte | 3.66e-08 | 115 |
leukocyte | 2.13e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
blood | 2.93e-16 | 15 |
haemolymphatic fluid | 2.93e-16 | 15 |
organism substance | 2.93e-16 | 15 |