FFCP PHASE1:Hg19::chr13:28543388..28543406,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:28543388..28543406,-
|short_description=p3@CDX2
|description=CAGE_peak_3_at_CDX2_5end
|association_with_transcript=-71bp_to_NM_001265,uc001urv.2_5end
|En...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1045 | |EntrezGene=1045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |HGNC=1806 | ||
|TSSclassifier=strong | |||
|UniProt=Q99626 | |UniProt=Q99626 | ||
|association_with_transcript=-71bp_to_NM_001265,uc001urv.2_5end | |||
|cluster_id=chr13:28543388..28543406,- | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_3_at_CDX2_5end | |||
|id=chr13:28543388..28543406,- | |||
|ontology_enrichment_celltype=CL:0000453!2.46e-11!5;CL:0002178!3.23e-11!3;CL:0002563!1.44e-09!4;CL:0002253!6.08e-09!2;CL:0002251!1.04e-07!21;CL:1000415!1.12e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002563;1.16e-21;4!CL:0002253;1.36e-19;2!CL:0002251;1.41e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.08e-21,4;CL:0002253,1.24e-19,2;CL:0002251,1.40e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.50e-10;1 | |||
|ontology_enrichment_disease=DOID:3119!1.67e-19!14;DOID:305!6.18e-12!106;DOID:4929!2.09e-08!2;DOID:0050687!2.59e-08!143;DOID:299!3.66e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:3119;3.51e-16;14!DOID:299;6.93e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,3.46e-16,14;DOID:299,7.11e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0005409!6.59e-45!35;UBERON:0000160!2.08e-35!27;UBERON:0000059!1.29e-21!11;UBERON:0004907!1.73e-19!5;UBERON:0002294!5.17e-17!7;UBERON:0001173!5.17e-17!7;UBERON:0004912!5.17e-17!7;UBERON:0001007!3.96e-16!155;UBERON:0001555!3.96e-16!155;UBERON:0007026!3.96e-16!155;UBERON:0001052!4.97e-16!4;UBERON:0004921!2.75e-15!129;UBERON:0004185!2.75e-15!129;UBERON:0001155!3.19e-15!9;UBERON:0002108!1.10e-14!14;UBERON:0004119!3.74e-14!169;UBERON:0000925!3.74e-14!169;UBERON:0006595!3.74e-14!169;UBERON:0003350!1.39e-12!5;UBERON:0002075!3.30e-11!18;UBERON:0000945!8.77e-11!8;UBERON:0010039!8.77e-11!8;UBERON:0002110!9.57e-11!3;UBERON:0006242!9.57e-11!3;UBERON:0000077!5.48e-10!130;UBERON:0002114!1.27e-09!12;UBERON:0001242!1.44e-09!4;UBERON:0001262!1.44e-09!4;UBERON:0004786!1.44e-09!4;UBERON:0004808!1.44e-09!4;UBERON:0001277!1.44e-09!4;UBERON:0001046!5.86e-09!19;UBERON:0002394!2.63e-08!4;UBERON:0003928!2.63e-08!4;UBERON:0001045!4.20e-08!11;UBERON:0000344!1.19e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.69e-83;17!UBERON:0005409;3.41e-75;22!UBERON:0000059;2.81e-52;11!UBERON:0004921;2.32e-46;33!UBERON:0004907;1.73e-45;5!UBERON:0001052;6.02e-37;4!UBERON:0001155;2.04e-36;9!UBERON:0002108;3.09e-29;4!UBERON:0001242;1.16e-21;4!UBERON:0001262;1.16e-21;4!UBERON:0004786;1.16e-21;4!UBERON:0004808;1.16e-21;4!UBERON:0001277;1.16e-21;4!UBERON:0001555;1.46e-15;54!UBERON:0002114;6.76e-13;2!UBERON:0001007;8.35e-13;81!UBERON:0000485;1.24e-12;7!UBERON:0003929;1.24e-12;7!UBERON:0003350;4.04e-11;8!UBERON:0001154;2.50e-10;1!UBERON:0001153;2.50e-10;1!UBERON:0009854;2.50e-10;1!UBERON:0004913;3.78e-10;1!UBERON:0003703;3.78e-10;1!UBERON:0001174;3.78e-10;1!UBERON:0004914;3.78e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.38e-83,17;UBERON:0005409,2.48e-66,25;UBERON:0000059,2.22e-52,11;UBERON:0004907,1.31e-45,5;UBERON:0001052,4.57e-37,4;UBERON:0001155,1.86e-36,9;UBERON:0002108,3.20e-29,4;UBERON:0001242,1.08e-21,4;UBERON:0001262,1.08e-21,4;UBERON:0004786,1.08e-21,4;UBERON:0004808,1.08e-21,4;UBERON:0001277,1.08e-21,4;UBERON:0004921,1.74e-19,118;UBERON:0001046,5.15e-17,19;UBERON:0001007,2.27e-15,145;UBERON:0001555,2.27e-15,145;UBERON:0007026,2.27e-15,145;UBERON:0004119,1.12e-13,160;UBERON:0000925,1.12e-13,160;UBERON:0006595,1.12e-13,160;UBERON:0002114,6.97e-13,2;UBERON:0003350,3.90e-11,8;UBERON:0001154,2.50e-10,1;UBERON:0001153,2.50e-10,1;UBERON:0001045,2.50e-10,1;UBERON:0004913,3.61e-10,1;UBERON:0003703,3.61e-10,1;UBERON:0001174,3.61e-10,1;UBERON:0004914,3.61e-10,1;UBERON:0011216,3.63e-10,223;UBERON:0000485,5.92e-10,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16193942869518,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.0310229908724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.820949733026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481764225311099,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,0,0,0,0,0,0,0,0,0,6.90709788827869,4.28285671352269,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75336192894192,82.0112944622525,20.9005005526486,16.0108191751044,14.664723478407,0,0,0,0,0,0,0,0,0,0,8.46935012340647,0,0,0.751617097072463,0.103688191397247,0.664653872707185,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.160317640503067,0.213452994739353,1.19885765749278,0.144090417154106,0.114536596165916,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.6393519243926,0,0,0,0,0,0,0,0,0.137539436597234,0,0.2249738915515,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0.654261577023377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353909170043221,0,0,0,0,0,0,0,0.781514011233092,0,0,1.33070477595341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.4598679219066,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392600934460972,0,0,0,0,0,0,0,0,9.71336305535056,0,0,17.8272305229352,12.2393353882216,0,0,0,0,0,0.4226557275834,0,0,0,0,0.535661815816973,0,0,0.730336388246517,0,0,0,0,0,9.52248312927721,0,0,0,0,0,0,0.203977659483963,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325613074443898,0,0,0.718601616852695,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16193942869518,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.0310229908724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.820949733026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481764225311099,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,0,0,0,0,0,0,0,0,0,6.90709788827869,4.28285671352269,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75336192894192,82.0112944622525,20.9005005526486,16.0108191751044,14.664723478407,0,0,0,0,0,0,0,0,0,0,8.46935012340647,0,0,0.751617097072463,0.103688191397247,0.664653872707185,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.160317640503067,0.213452994739353,1.19885765749278,0.144090417154106,0.114536596165916,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.6393519243926,0,0,0,0,0,0,0,0,0.137539436597234,0,0.2249738915515,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0.654261577023377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353909170043221,0,0,0,0,0,0,0,0.781514011233092,0,0,1.33070477595341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.4598679219066,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392600934460972,0,0,0,0,0,0,0,0,9.71336305535056,0,0,17.8272305229352,12.2393353882216,0,0,0,0,0,0.4226557275834,0,0,0,0,0.535661815816973,0,0,0.730336388246517,0,0,0,0,0,9.52248312927721,0,0,0,0,0,0,0.203977659483963,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325613074443898,0,0,0.718601616852695,0,0,0,0,0,0 | ||
|short_description=p3@CDX2 | |||
}} | }} |
Latest revision as of 23:39, 16 September 2015
Short description: | p3@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -71bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.08e-21 | 4 |
epithelial cell of large intestine | 1.24e-19 | 2 |
epithelial cell of alimentary canal | 1.40e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.38e-83 | 17 |
gastrointestinal system | 2.48e-66 | 25 |
large intestine | 2.22e-52 | 11 |
lower digestive tract | 1.31e-45 | 5 |
rectum | 4.57e-37 | 4 |
colon | 1.86e-36 | 9 |
small intestine | 3.20e-29 | 4 |
intestinal mucosa | 1.08e-21 | 4 |
wall of intestine | 1.08e-21 | 4 |
gastrointestinal system mucosa | 1.08e-21 | 4 |
gastrointestinal system epithelium | 1.08e-21 | 4 |
intestinal epithelium | 1.08e-21 | 4 |
subdivision of digestive tract | 1.74e-19 | 118 |
hindgut | 5.15e-17 | 19 |
digestive system | 2.27e-15 | 145 |
digestive tract | 2.27e-15 | 145 |
primitive gut | 2.27e-15 | 145 |
endoderm-derived structure | 1.12e-13 | 160 |
endoderm | 1.12e-13 | 160 |
presumptive endoderm | 1.12e-13 | 160 |
duodenum | 6.97e-13 | 2 |
epithelium of mucosa | 3.90e-11 | 8 |
vermiform appendix | 2.50e-10 | 1 |
caecum | 2.50e-10 | 1 |
midgut | 2.50e-10 | 1 |
hepatopancreatic ampulla | 3.61e-10 | 1 |
extrahepatic bile duct | 3.61e-10 | 1 |
common bile duct | 3.61e-10 | 1 |
duodenal papilla | 3.61e-10 | 1 |
organ system subdivision | 3.63e-10 | 223 |
simple columnar epithelium | 5.92e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 3.46e-16 | 14 |
adenocarcinoma | 7.11e-09 | 25 |