FFCP PHASE1:Hg19::chr22:43523692..43523724,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr22:43523692..43523724,+ | |||
|description=CAGE_peak_at_chr22:43523692..43523724,+ | |description=CAGE_peak_at_chr22:43523692..43523724,+ | ||
|id=chr22:43523692..43523724,+ | |id=chr22:43523692..43523724,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.06e-27!254;CL:0002076!8.73e-21!43;CL:0000223!3.72e-14!59;CL:0002368!2.49e-13!13;CL:0002251!1.71e-09!21;CL:0002202!6.17e-09!9;CL:0002632!6.17e-09!9 | |ontology_enrichment_celltype=CL:0000066!3.06e-27!254;CL:0002076!8.73e-21!43;CL:0000223!3.72e-14!59;CL:0002368!2.49e-13!13;CL:0002251!1.71e-09!21;CL:0002202!6.17e-09!9;CL:0002632!6.17e-09!9 | ||
|ontology_enrichment_celltype_v019=CL:0002368;6.83e-21;13!CL:0002076;5.73e-19;42!CL:0002202;6.33e-13;9!CL:0002632;6.33e-13;9!CL:0002251;6.85e-11;20!CL:0002328;2.04e-08;3!CL:0000307;2.27e-08;3!CL:0002166;4.50e-07;3!CL:0002621;7.90e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.69e-25,42;CL:0000066,4.26e-24,253;CL:0002368,6.85e-21,13;CL:0000223,6.02e-18,58;CL:0002202,6.29e-13,9;CL:0002632,6.29e-13,9;CL:0002251,6.78e-11,20;CL:0002328,1.99e-08,3;CL:0000068,2.24e-08,3;CL:0000069,2.24e-08,3;CL:0000307,2.24e-08,3;CL:0000377,2.24e-08,3;CL:0002166,3.88e-07,3;CL:0002621,7.50e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;3.76e-10;58!CL:0000377;2.27e-08;3 | |||
|ontology_enrichment_disease=DOID:305!9.27e-25!106;DOID:0050687!1.64e-15!143;DOID:162!2.47e-14!235;DOID:1749!6.84e-14!14;DOID:14566!1.64e-13!239;DOID:299!3.20e-09!25 | |ontology_enrichment_disease=DOID:305!9.27e-25!106;DOID:0050687!1.64e-15!143;DOID:162!2.47e-14!235;DOID:1749!6.84e-14!14;DOID:14566!1.64e-13!239;DOID:299!3.20e-09!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.81e-21;14!DOID:299;2.93e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.62e-21,14;DOID:305,1.25e-16,106;DOID:0050687,1.21e-11,143;DOID:299,2.79e-07,25;DOID:162,7.33e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.00e-23!169;UBERON:0000925!1.00e-23!169;UBERON:0006595!1.00e-23!169;UBERON:0001007!1.39e-18!155;UBERON:0001555!1.39e-18!155;UBERON:0007026!1.39e-18!155;UBERON:0001004!2.15e-17!72;UBERON:0004921!5.18e-17!129;UBERON:0004185!5.18e-17!129;UBERON:0000065!6.56e-17!53;UBERON:0008947!6.81e-14!38;UBERON:0003258!6.81e-14!38;UBERON:0000077!8.57e-14!130;UBERON:0000072!4.49e-13!46;UBERON:0001041!1.37e-10!98;UBERON:0005911!3.29e-10!82;UBERON:0005178!1.07e-09!34;UBERON:0002224!1.07e-09!34;UBERON:0005181!3.10e-09!35;UBERON:0000464!2.94e-08!104;UBERON:0000344!5.19e-08!12;UBERON:0007196!7.36e-08!14;UBERON:0001558!7.36e-08!14;UBERON:0005153!2.20e-07!37;UBERON:0004807!2.96e-07!28;UBERON:0005157!3.74e-07!51;UBERON:0000466!4.31e-07!126;UBERON:0005910!4.81e-07!6;UBERON:0005177!5.62e-07!107;UBERON:0002294!8.52e-07!7;UBERON:0001173!8.52e-07!7;UBERON:0004912!8.52e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.05e-11;7!UBERON:0001173;1.05e-11;7!UBERON:0007196;1.79e-11;15!UBERON:0001558;1.79e-11;15!UBERON:0005911;1.44e-10;36!UBERON:0000486;3.67e-10;12!UBERON:0005910;5.93e-09;6!UBERON:0000974;8.25e-09;6!UBERON:0004807;1.88e-08;22!UBERON:0004815;2.04e-08;3!UBERON:0002031;2.04e-08;3!UBERON:0003126;2.41e-08;7!UBERON:0001005;2.41e-08;7!UBERON:0005178;6.53e-08;34!UBERON:0002224;6.53e-08;34!UBERON:0005409;1.89e-07;22!UBERON:0005181;1.95e-07;35!UBERON:0000344;3.26e-07;20!UBERON:0002110;4.13e-07;3!UBERON:0000365;4.86e-07;5!UBERON:0001949;7.90e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.97e-20,160;UBERON:0000925,6.97e-20,160;UBERON:0006595,6.97e-20,160;UBERON:0001007,2.89e-14,145;UBERON:0001555,2.89e-14,145;UBERON:0007026,2.89e-14,145;UBERON:0007196,1.77e-11,15;UBERON:0001558,1.77e-11,15;UBERON:0004921,1.96e-11,118;UBERON:0001004,3.16e-11,74;UBERON:0005911,4.50e-11,82;UBERON:0000065,2.30e-09,54;UBERON:0005910,5.58e-09,6;UBERON:0002294,7.17e-09,9;UBERON:0001173,7.17e-09,9;UBERON:0004912,7.17e-09,9;UBERON:0005178,8.06e-09,34;UBERON:0002224,8.06e-09,34;UBERON:0005181,1.78e-08,35;UBERON:0004815,1.99e-08,3;UBERON:0002031,1.99e-08,3;UBERON:0003126,2.37e-08,7;UBERON:0001005,2.37e-08,7;UBERON:0000344,3.29e-07,20;UBERON:0000365,4.44e-07,5;UBERON:0002110,4.51e-07,3;UBERON:0006242,4.51e-07,3;UBERON:0001041,4.62e-07,87;UBERON:0001949,7.50e-07,3 | |||
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| ||
|short_description=p@chr22:43523692..43523724,+ | |short_description=p@chr22:43523692..43523724,+ | ||
}} | }} |
Latest revision as of 21:53, 28 July 2015
Short description: | p@chr22:43523692..43523724, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:43523692..43523724, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.69e-25 | 42 |
epithelial cell | 4.26e-24 | 253 |
respiratory epithelial cell | 6.85e-21 | 13 |
endodermal cell | 6.02e-18 | 58 |
epithelial cell of tracheobronchial tree | 6.29e-13 | 9 |
epithelial cell of lower respiratory tract | 6.29e-13 | 9 |
epithelial cell of alimentary canal | 6.78e-11 | 20 |
bronchial epithelial cell | 1.99e-08 | 3 |
duct epithelial cell | 2.24e-08 | 3 |
branched duct epithelial cell | 2.24e-08 | 3 |
tracheal epithelial cell | 2.24e-08 | 3 |
tracheoblast | 2.24e-08 | 3 |
epithelial cell of Malassez | 3.88e-07 | 3 |
gingival epithelial cell | 7.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.97e-20 | 160 |
endoderm | 6.97e-20 | 160 |
presumptive endoderm | 6.97e-20 | 160 |
digestive system | 2.89e-14 | 145 |
digestive tract | 2.89e-14 | 145 |
primitive gut | 2.89e-14 | 145 |
tracheobronchial tree | 1.77e-11 | 15 |
lower respiratory tract | 1.77e-11 | 15 |
subdivision of digestive tract | 1.96e-11 | 118 |
respiratory system | 3.16e-11 | 74 |
endo-epithelium | 4.50e-11 | 82 |
respiratory tract | 2.30e-09 | 54 |
transitional epithelium | 5.58e-09 | 6 |
biliary system | 7.17e-09 | 9 |
biliary tree | 7.17e-09 | 9 |
biliary bud | 7.17e-09 | 9 |
thoracic cavity element | 8.06e-09 | 34 |
thoracic cavity | 8.06e-09 | 34 |
thoracic segment organ | 1.78e-08 | 35 |
lower respiratory tract epithelium | 1.99e-08 | 3 |
epithelium of bronchus | 1.99e-08 | 3 |
trachea | 2.37e-08 | 7 |
respiratory airway | 2.37e-08 | 7 |
mucosa | 3.29e-07 | 20 |
urothelium | 4.44e-07 | 5 |
gallbladder | 4.51e-07 | 3 |
gall bladder primordium | 4.51e-07 | 3 |
foregut | 4.62e-07 | 87 |
gingival epithelium | 7.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.62e-21 | 14 |
carcinoma | 1.25e-16 | 106 |
cell type cancer | 1.21e-11 | 143 |
adenocarcinoma | 2.79e-07 | 25 |
cancer | 7.33e-07 | 235 |