FFCP PHASE1:Hg19::chr3:138582425..138582428,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:138582425..138582428,- | |||
|description=CAGE_peak_at_chr3:138582425..138582428,- | |description=CAGE_peak_at_chr3:138582425..138582428,- | ||
|id=chr3:138582425..138582428,- | |id=chr3:138582425..138582428,- | ||
|ontology_enrichment_celltype=CL:0000066!6.54e-13!254;CL:0000223!2.54e-09!59;CL:0000063!6.77e-07!578 | |ontology_enrichment_celltype=CL:0000066!6.54e-13!254;CL:0000223!2.54e-09!59;CL:0000063!6.77e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0002202;2.26e-27;9!CL:0002632;2.26e-27;9!CL:0002328;1.95e-21;3!CL:0000307;3.63e-21;3!CL:0002368;4.39e-19;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.72e-27,9;CL:0002632,1.72e-27,9;CL:0002328,1.76e-21,3;CL:0000068,2.67e-21,3;CL:0000069,2.67e-21,3;CL:0000307,2.67e-21,3;CL:0000377,2.67e-21,3;CL:0002368,3.64e-19,13;CL:0002076,3.87e-09,42 | |||
|ontology_enrichment_development_v019=CL:0000377;3.63e-21;3!UBERON:0008814;6.42e-09;2!UBERON:0010056;6.42e-09;2 | |||
|ontology_enrichment_disease=DOID:162!4.42e-35!235;DOID:14566!5.67e-35!239;DOID:0050687!8.36e-30!143;DOID:305!1.20e-29!106;DOID:0050686!7.03e-14!137;DOID:7!6.54e-11!39;DOID:299!9.74e-10!25;DOID:2531!3.30e-09!51;DOID:0060083!3.30e-09!51;DOID:8692!5.66e-09!31;DOID:1240!2.09e-08!39;DOID:1749!3.28e-07!14 | |ontology_enrichment_disease=DOID:162!4.42e-35!235;DOID:14566!5.67e-35!239;DOID:0050687!8.36e-30!143;DOID:305!1.20e-29!106;DOID:0050686!7.03e-14!137;DOID:7!6.54e-11!39;DOID:299!9.74e-10!25;DOID:2531!3.30e-09!51;DOID:0060083!3.30e-09!51;DOID:8692!5.66e-09!31;DOID:1240!2.09e-08!39;DOID:1749!3.28e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1036;8.95e-09;8!DOID:8692;3.15e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,8.95e-09,8;DOID:8692,2.86e-08,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.95e-21;3!UBERON:0002031;1.95e-21;3!UBERON:0007196;1.37e-16;15!UBERON:0001558;1.37e-16;15!UBERON:0002185;2.85e-13;5!UBERON:0000485;9.52e-10;7!UBERON:0003126;1.24e-09;7!UBERON:0001005;1.24e-09;7!UBERON:0005178;1.50e-07;34!UBERON:0002224;1.50e-07;34!UBERON:0000072;6.82e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.76e-21,3;UBERON:0002031,1.76e-21,3;UBERON:0007196,1.16e-16,15;UBERON:0001558,1.16e-16,15;UBERON:0002185,2.68e-13,5;UBERON:0003126,1.09e-09,7;UBERON:0001005,1.09e-09,7;UBERON:0000072,3.66e-08,47;UBERON:0000485,8.60e-08,9;UBERON:0005178,1.66e-07,34;UBERON:0002224,1.66e-07,34;UBERON:0005181,2.67e-07,35;UBERON:0000065,4.25e-07,54;UBERON:0008947,9.71e-07,38;UBERON:0003258,9.71e-07,38 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,2.75826367343678,0,1.10926203050036,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,1.16253575405585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34060455107157,1.08890984861323,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0.144269212976445,0,0,0,0,0,0,0.280797178113459,0.228234679033192,0.626719583092093,0,0,0.1605880751037,0.403599414382095,2.12923118845163,1.03051603426729,0,0,0,0,0.278406173895242,0,0,0.66614393599564,0,0,0,0,0.111443384277478,0.284136146806413,0,0,0,0,0,0,0.329607748453519,0,0,0,0.251932747854276,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,1.0241410345695,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.269272933229316,0,0,0,0,0,0.31396051279005,0.332423363800313,0,0,0,2.46679852541441,0.794682894901893,0,0.652931232636591,0.424059214301822,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0.126373159256976,0.901940516486955,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0.261177619741208,0,0.171986032471617,0,0,0,0,0,0,0.685209623233754,0.19871461170299,0,0,0,0,0.19980960958213,0.288180834308212,0,1.20116498503375,0.288109595976299,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.26961417541674,0.295282444544246,0.254019996197353,0,0,0,0,0.415440338029185,0.674921674654501,0,0,0,0,0,0.211200673038813,0,0,0,0,0.25426853765475,0,0,0,0,3.52997839222158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691743174681154,0.499921631848426,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0.192914038270915,0.337884881306145,0.256241518587947,0,0,0,0,0,0,0.327609848846413,0.737318726261158,0.422624246717254,0,0.106691729694141,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353909170043221,0,1.15525666150338,0,0,0,0,0,0,0.523813388962845,0.818859587550484,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.354581522651905,0.111231401892069,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0.116241425368125,0,0,0,0,0,0,0,0.170426809518315,0,0.68732060563215,0,0,0,0.098150233615243,0.487671699929078,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0.504665699340316,0.546327859818478,0.126698501011437,0.305966489225945,0.26721740526556,0.0918948995348449,0,0,0,0,0,0,0,0,0.0620747142958579,1.00918676322552,0,0,0,0,0,0.0717222053926763,0,0.651226148887796,0,0,0.538951212639521,0,0,0,0,0,0 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| ||
|short_description=p@chr3:138582425..138582428,- | |short_description=p@chr3:138582425..138582428,- | ||
}} | }} |
Latest revision as of 16:17, 29 July 2015
Short description: | p@chr3:138582425..138582428, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:138582425..138582428, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.72e-27 | 9 |
epithelial cell of lower respiratory tract | 1.72e-27 | 9 |
bronchial epithelial cell | 1.76e-21 | 3 |
duct epithelial cell | 2.67e-21 | 3 |
branched duct epithelial cell | 2.67e-21 | 3 |
tracheal epithelial cell | 2.67e-21 | 3 |
tracheoblast | 2.67e-21 | 3 |
respiratory epithelial cell | 3.64e-19 | 13 |
endo-epithelial cell | 3.87e-09 | 42 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.76e-21 | 3 |
epithelium of bronchus | 1.76e-21 | 3 |
tracheobronchial tree | 1.16e-16 | 15 |
lower respiratory tract | 1.16e-16 | 15 |
bronchus | 2.68e-13 | 5 |
trachea | 1.09e-09 | 7 |
respiratory airway | 1.09e-09 | 7 |
segment of respiratory tract | 3.66e-08 | 47 |
simple columnar epithelium | 8.60e-08 | 9 |
thoracic cavity element | 1.66e-07 | 34 |
thoracic cavity | 1.66e-07 | 34 |
thoracic segment organ | 2.67e-07 | 35 |
respiratory tract | 4.25e-07 | 54 |
respiratory primordium | 9.71e-07 | 38 |
endoderm of foregut | 9.71e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 8.95e-09 | 8 |
myeloid leukemia | 2.86e-08 | 31 |