FFCP PHASE1:Hg19::chr4:154410402..154410460,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:154410402..154410460,+ | |||
|coexpression_cluster_id=C342 | |||
|description=CAGE_peak_at_chr4:154410402..154410460,+ | |description=CAGE_peak_at_chr4:154410402..154410460,+ | ||
|id=chr4:154410402..154410460,+ | |id=chr4:154410402..154410460,+ | ||
|ontology_enrichment_celltype=CL:0000838!2.78e-37!52;CL:0000542!2.88e-36!53;CL:0000051!2.88e-36!53;CL:0002087!5.38e-29!119;CL:0000738!7.51e-29!140;CL:0000988!1.28e-23!182;CL:0002031!2.28e-23!124;CL:0000037!5.17e-23!172;CL:0000566!5.17e-23!172;CL:0002032!4.04e-21!165;CL:0000837!4.04e-21!165;CL:0000791!6.63e-19!18;CL:0000789!6.63e-19!18;CL:0002420!6.63e-19!18;CL:0002419!6.63e-19!18;CL:0000790!6.63e-19!18;CL:0000945!7.88e-18!24;CL:0000826!7.88e-18!24;CL:0000084!8.79e-17!25;CL:0000827!8.79e-17!25;CL:0000625!3.18e-13!11;CL:0000236!2.91e-11!14;CL:0000624!8.61e-09!6;CL:0000080!5.95e-07!6 | |ontology_enrichment_celltype=CL:0000838!2.78e-37!52;CL:0000542!2.88e-36!53;CL:0000051!2.88e-36!53;CL:0002087!5.38e-29!119;CL:0000738!7.51e-29!140;CL:0000988!1.28e-23!182;CL:0002031!2.28e-23!124;CL:0000037!5.17e-23!172;CL:0000566!5.17e-23!172;CL:0002032!4.04e-21!165;CL:0000837!4.04e-21!165;CL:0000791!6.63e-19!18;CL:0000789!6.63e-19!18;CL:0002420!6.63e-19!18;CL:0002419!6.63e-19!18;CL:0000790!6.63e-19!18;CL:0000945!7.88e-18!24;CL:0000826!7.88e-18!24;CL:0000084!8.79e-17!25;CL:0000827!8.79e-17!25;CL:0000625!3.18e-13!11;CL:0000236!2.91e-11!14;CL:0000624!8.61e-09!6;CL:0000080!5.95e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.09e-23;18!CL:0000789;5.09e-23;18!CL:0002419;5.09e-23;18!CL:0000624;5.33e-19;6!CL:0000542;6.45e-18;53!CL:0000945;2.95e-17;24!CL:0000084;8.40e-16;25!CL:0000623;5.35e-11;3!CL:0000898;1.20e-10;3!CL:0000226;5.75e-10;3!CL:0000842;5.75e-10;3!CL:0000625;7.52e-10;11!CL:0000815;9.37e-08;2!CL:0000792;9.37e-08;2!CL:0002677;9.37e-08;2!CL:0002087;1.78e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.99e-39,52;CL:0000542,3.02e-38,53;CL:0000051,3.02e-38,53;CL:0000791,2.22e-23,18;CL:0000789,2.22e-23,18;CL:0002420,2.22e-23,18;CL:0002419,2.22e-23,18;CL:0000790,2.22e-23,18;CL:0000624,3.66e-19,6;CL:0002087,6.46e-19,115;CL:0000738,1.62e-18,136;CL:0000945,3.13e-17,24;CL:0000826,3.13e-17,24;CL:0000084,4.73e-16,25;CL:0000827,4.73e-16,25;CL:0002031,6.68e-14,120;CL:0000037,2.13e-13,168;CL:0000988,2.67e-12,177;CL:0002032,2.92e-11,161;CL:0000837,2.92e-11,161;CL:0000623,5.03e-11,3;CL:0000825,5.03e-11,3;CL:0000898,1.00e-10,3;CL:0000625,4.72e-10,11;CL:0000226,5.67e-10,3;CL:0000842,5.67e-10,3;CL:0000815,7.82e-08,2;CL:0000792,7.82e-08,2;CL:0002677,7.82e-08,2;CL:0000236,2.09e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;5.09e-23;18!CL:0000051;6.45e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.20e-14!15;UBERON:0000179!2.20e-14!15;UBERON:0000463!2.20e-14!15;UBERON:0002193!8.05e-10!112;UBERON:0002390!2.01e-08!102;UBERON:0003061!2.01e-08!102 | |ontology_enrichment_uberon=UBERON:0000178!2.20e-14!15;UBERON:0000179!2.20e-14!15;UBERON:0000463!2.20e-14!15;UBERON:0002193!8.05e-10!112;UBERON:0002390!2.01e-08!102;UBERON:0003061!2.01e-08!102 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.95e-19;15!UBERON:0000179;5.95e-19;15!UBERON:0000463;5.95e-19;15!UBERON:0002390;1.16e-10;32!UBERON:0002193;2.60e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.40e-19,15;UBERON:0000179,7.40e-19,15;UBERON:0000463,7.40e-19,15 | |||
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|short_description=p@chr4:154410402..154410460,+ | |short_description=p@chr4:154410402..154410460,+ | ||
}} | }} |
Latest revision as of 02:23, 30 July 2015
Short description: | p@chr4:154410402..154410460, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:154410402..154410460, + |
Coexpression cluster: | C342_xeroderma_b_B_splenic_plasma_Burkitt_thymus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.99e-39 | 52 |
lymphocyte | 3.02e-38 | 53 |
common lymphoid progenitor | 3.02e-38 | 53 |
mature alpha-beta T cell | 2.22e-23 | 18 |
alpha-beta T cell | 2.22e-23 | 18 |
immature T cell | 2.22e-23 | 18 |
mature T cell | 2.22e-23 | 18 |
immature alpha-beta T cell | 2.22e-23 | 18 |
CD4-positive, alpha-beta T cell | 3.66e-19 | 6 |
nongranular leukocyte | 6.46e-19 | 115 |
leukocyte | 1.62e-18 | 136 |
lymphocyte of B lineage | 3.13e-17 | 24 |
pro-B cell | 3.13e-17 | 24 |
T cell | 4.73e-16 | 25 |
pro-T cell | 4.73e-16 | 25 |
hematopoietic lineage restricted progenitor cell | 6.68e-14 | 120 |
hematopoietic stem cell | 2.13e-13 | 168 |
hematopoietic cell | 2.67e-12 | 177 |
hematopoietic oligopotent progenitor cell | 2.92e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.92e-11 | 161 |
natural killer cell | 5.03e-11 | 3 |
pro-NK cell | 5.03e-11 | 3 |
naive T cell | 1.00e-10 | 3 |
CD8-positive, alpha-beta T cell | 4.72e-10 | 11 |
single nucleate cell | 5.67e-10 | 3 |
mononuclear cell | 5.67e-10 | 3 |
regulatory T cell | 7.82e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 7.82e-08 | 2 |
naive regulatory T cell | 7.82e-08 | 2 |
B cell | 2.09e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
blood | 7.40e-19 | 15 |
haemolymphatic fluid | 7.40e-19 | 15 |
organism substance | 7.40e-19 | 15 |