FFCP PHASE1:Hg19::chr15:99791649..99791715,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr15:99791649..99791715,+
|short_description=p1@LRRC28
|description=CAGE_peak_1_at_LRRC28_5end
|association_with_transcript=0bp_to_ENST00000422500,ENST00000442...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=123355 | |EntrezGene=123355 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28355 | |HGNC=28355 | ||
|TSSclassifier=strong | |||
|UniProt=B4DHL3,B4DEX4,Q86X40,Q8NB41 | |UniProt=B4DHL3,B4DEX4,Q86X40,Q8NB41 | ||
|association_with_transcript=0bp_to_ENST00000422500,ENST00000442993,ENST00000447360,ENST00000558471,ENST00000558500,ENST00000559433,ENST00000560213,ENST00000561253,NM_144598,uc002bva.1,uc002bvb.1,uc002bvc.1,uc010urs.1,uc010urt.1,uc010uru.1_5end | |||
|cluster_id=chr15:99791649..99791715,+ | |||
|description=CAGE_peak_1_at_LRRC28_5end | |||
|id=chr15:99791649..99791715,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.09e-08!90;UBERON:0002619!1.14e-08!22;UBERON:0000924!1.20e-08!173;UBERON:0006601!1.20e-08!173;UBERON:0001950!1.32e-08!20;UBERON:0001049!2.25e-08!57;UBERON:0005068!2.25e-08!57;UBERON:0006241!2.25e-08!57;UBERON:0007135!2.25e-08!57;UBERON:0001893!2.28e-08!34;UBERON:0002616!2.77e-08!59;UBERON:0000153!4.04e-08!129;UBERON:0007811!4.04e-08!129;UBERON:0007023!5.39e-08!115;UBERON:0001869!6.66e-08!32;UBERON:0002791!6.79e-08!33;UBERON:0000956!7.84e-08!25;UBERON:0000203!7.84e-08!25;UBERON:0005743!1.06e-07!86;UBERON:0004121!1.47e-07!169;UBERON:0000033!1.60e-07!123;UBERON:0003075!2.30e-07!86;UBERON:0007284!2.30e-07!86;UBERON:0002020!2.53e-07!34;UBERON:0003528!2.53e-07!34;UBERON:0001017!2.64e-07!82;UBERON:0003080!6.79e-07!42;UBERON:0000073!7.41e-07!94;UBERON:0001016!7.41e-07!94;UBERON:0002780!7.56e-07!41;UBERON:0001890!7.56e-07!41;UBERON:0006240!7.56e-07!41;UBERON:0000955!8.62e-07!69;UBERON:0006238!8.62e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.16e-08;22!UBERON:0001950;1.48e-08;20!UBERON:0000956;6.42e-08;25!UBERON:0000203;6.42e-08;25!UBERON:0001893;3.51e-07;34!UBERON:0001869;3.98e-07;32!UBERON:0002791;4.88e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.14e-08,22;UBERON:0001950,1.32e-08,20;UBERON:0001893,2.28e-08,34;UBERON:0004121,2.36e-08,171;UBERON:0000924,2.36e-08,171;UBERON:0006601,2.36e-08,171;UBERON:0001049,2.54e-08,56;UBERON:0005068,2.54e-08,56;UBERON:0006241,2.54e-08,56;UBERON:0007135,2.54e-08,56;UBERON:0000073,3.17e-08,53;UBERON:0002616,3.17e-08,53;UBERON:0001869,6.66e-08,32;UBERON:0000956,7.84e-08,25;UBERON:0000203,7.84e-08,25;UBERON:0007023,1.13e-07,114;UBERON:0002346,1.22e-07,86;UBERON:0002791,1.24e-07,32;UBERON:0003528,2.53e-07,34;UBERON:0002020,2.53e-07,34;UBERON:0001017,3.05e-07,81;UBERON:0010371,6.55e-07,104;UBERON:0002780,7.56e-07,41;UBERON:0001890,7.56e-07,41;UBERON:0003080,7.56e-07,41;UBERON:0006240,7.56e-07,41;UBERON:0000955,9.93e-07,68;UBERON:0006238,9.93e-07,68 | |||
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| ||
|short_description=p1@LRRC28 | |||
}} | }} |
Latest revision as of 03:36, 20 September 2015
Short description: | p1@LRRC28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC28_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000422500, ENST00000442993, ENST00000447360, ENST00000558471, ENST00000558500, ENST00000559433, ENST00000560213, ENST00000561253, NM_144598, uc002bva.1, uc002bvb.1, uc002bvc.1, uc010urs.1, uc010urt.1, uc010uru.1_5end |
EntrezGene: | LRRC28 |
HGNC: | 28355 |
UniProt: | B4DHL3B4DEX4Q86X40Q8NB41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.14e-08 | 22 |
neocortex | 1.32e-08 | 20 |
telencephalon | 2.28e-08 | 34 |
ectoderm-derived structure | 2.36e-08 | 171 |
ectoderm | 2.36e-08 | 171 |
presumptive ectoderm | 2.36e-08 | 171 |
neural tube | 2.54e-08 | 56 |
neural rod | 2.54e-08 | 56 |
future spinal cord | 2.54e-08 | 56 |
neural keel | 2.54e-08 | 56 |
regional part of nervous system | 3.17e-08 | 53 |
regional part of brain | 3.17e-08 | 53 |
cerebral hemisphere | 6.66e-08 | 32 |
cerebral cortex | 7.84e-08 | 25 |
pallium | 7.84e-08 | 25 |
adult organism | 1.13e-07 | 114 |
neurectoderm | 1.22e-07 | 86 |
regional part of telencephalon | 1.24e-07 | 32 |
brain grey matter | 2.53e-07 | 34 |
gray matter | 2.53e-07 | 34 |
central nervous system | 3.05e-07 | 81 |
ecto-epithelium | 6.55e-07 | 104 |
regional part of forebrain | 7.56e-07 | 41 |
forebrain | 7.56e-07 | 41 |
anterior neural tube | 7.56e-07 | 41 |
future forebrain | 7.56e-07 | 41 |
brain | 9.93e-07 | 68 |
future brain | 9.93e-07 | 68 |