FFCP PHASE1:Hg19::chr21:26839022..26839036,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000465390,ENST00000467945,ENST00000468736,ENST00000489205_5end | |association_with_transcript=5bp_to_ENST00000465390,ENST00000467945,ENST00000468736,ENST00000489205_5end | ||
|cluster_id=chr21:26839022..26839036,- | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_1_at_ENST00000465390_5end,CAGE_peak_1_at_ENST00000467945_5end,CAGE_peak_1_at_ENST00000468736_5end,CAGE_peak_1_at_ENST00000489205_5end | |description=CAGE_peak_1_at_ENST00000465390_5end,CAGE_peak_1_at_ENST00000467945_5end,CAGE_peak_1_at_ENST00000468736_5end,CAGE_peak_1_at_ENST00000489205_5end | ||
|id=chr21:26839022..26839036,- | |id=chr21:26839022..26839036,- | ||
|ontology_enrichment_celltype=CL:0002087!2.37e-20!119;CL:0002057!3.54e-20!42;CL:0002031!2.61e-19!124;CL:0000860!1.25e-18!45;CL:0000738!4.95e-18!140;CL:0000988!1.03e-16!182;CL:0002032!1.93e-14!165;CL:0000837!1.93e-14!165;CL:0000037!1.27e-13!172;CL:0000566!1.27e-13!172;CL:0000945!1.76e-12!24;CL:0000826!1.76e-12!24;CL:0002194!3.34e-12!63;CL:0000576!3.34e-12!63;CL:0000040!3.34e-12!63;CL:0000559!3.34e-12!63;CL:0002009!9.64e-12!65;CL:0000766!3.64e-11!76;CL:0000839!1.04e-10!70;CL:0000557!1.62e-10!71;CL:0000838!1.65e-09!52;CL:0000542!2.73e-09!53;CL:0000051!2.73e-09!53;CL:0000080!1.34e-08!6 | |ontology_enrichment_celltype=CL:0002087!2.37e-20!119;CL:0002057!3.54e-20!42;CL:0002031!2.61e-19!124;CL:0000860!1.25e-18!45;CL:0000738!4.95e-18!140;CL:0000988!1.03e-16!182;CL:0002032!1.93e-14!165;CL:0000837!1.93e-14!165;CL:0000037!1.27e-13!172;CL:0000566!1.27e-13!172;CL:0000945!1.76e-12!24;CL:0000826!1.76e-12!24;CL:0002194!3.34e-12!63;CL:0000576!3.34e-12!63;CL:0000040!3.34e-12!63;CL:0000559!3.34e-12!63;CL:0002009!9.64e-12!65;CL:0000766!3.64e-11!76;CL:0000839!1.04e-10!70;CL:0000557!1.62e-10!71;CL:0000838!1.65e-09!52;CL:0000542!2.73e-09!53;CL:0000051!2.73e-09!53;CL:0000080!1.34e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000945;2.06e-23;24!CL:0000860;2.36e-14;33!CL:0002057;2.36e-14;33!CL:0000946;2.32e-13;1!CL:0000786;2.32e-13;1!CL:0000473;1.65e-11;39!CL:0000234;1.65e-11;39!CL:0002087;4.49e-08;104!CL:0000576;7.43e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.10e-23,24;CL:0000826,2.10e-23,24;CL:0002087,7.63e-18,115;CL:0000988,4.61e-17,177;CL:0002031,4.95e-17,120;CL:0000738,7.88e-15,136;CL:0000946,2.32e-13,1;CL:0000786,2.32e-13,1;CL:0000980,2.32e-13,1;CL:0000860,7.51e-13,42;CL:0002057,7.51e-13,42;CL:0002032,2.97e-12,161;CL:0000837,2.97e-12,161;CL:0000037,1.15e-11,168;CL:0000473,3.59e-11,48;CL:0000234,3.59e-11,48;CL:0000838,1.71e-10,52;CL:0000542,2.77e-10,53;CL:0000051,2.77e-10,53;CL:0002194,8.17e-09,59;CL:0000576,8.17e-09,59;CL:0000040,8.17e-09,59;CL:0000559,8.17e-09,59;CL:0002009,1.65e-08,61;CL:0000839,7.92e-08,66;CL:0000557,1.06e-07,67;CL:0000785,2.58e-07,2;CL:0000955,2.58e-07,2;CL:0000818,2.58e-07,2;CL:0000954,2.58e-07,2;CL:0000816,2.58e-07,2;CL:0000766,3.94e-07,72 | |||
|ontology_enrichment_development_v019=CL:0002057;2.06e-10;42!CL:0000954;2.58e-07;2 | |||
|ontology_enrichment_disease=DOID:0060058!4.77e-08!10 | |ontology_enrichment_disease=DOID:0060058!4.77e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:630;3.99e-13;1!DOID:0050177;3.99e-13;1!DOID:0050427;3.99e-13;1!DOID:2355;5.07e-13;1!DOID:74;3.81e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.76e-13,1;DOID:0050177,3.76e-13,1;DOID:0050427,3.76e-13,1;DOID:2355,4.77e-13,1;DOID:74,3.70e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002390!8.77e-15!102;UBERON:0003061!8.77e-15!102;UBERON:0002193!4.46e-13!112;UBERON:0002371!5.02e-09!80;UBERON:0001474!3.32e-08!86;UBERON:0002405!2.28e-07!115;UBERON:0002106!4.18e-07!3;UBERON:0004854!4.18e-07!3;UBERON:0009034!4.18e-07!3;UBERON:0002095!4.18e-07!3;UBERON:0004782!4.18e-07!3;UBERON:0003281!4.18e-07!3;UBERON:0009664!4.18e-07!3;UBERON:0002296!4.18e-07!3;UBERON:0005602!4.18e-07!3;UBERON:0001179!4.18e-07!3;UBERON:0006293!4.18e-07!3 | |ontology_enrichment_uberon=UBERON:0002390!8.77e-15!102;UBERON:0003061!8.77e-15!102;UBERON:0002193!4.46e-13!112;UBERON:0002371!5.02e-09!80;UBERON:0001474!3.32e-08!86;UBERON:0002405!2.28e-07!115;UBERON:0002106!4.18e-07!3;UBERON:0004854!4.18e-07!3;UBERON:0009034!4.18e-07!3;UBERON:0002095!4.18e-07!3;UBERON:0004782!4.18e-07!3;UBERON:0003281!4.18e-07!3;UBERON:0009664!4.18e-07!3;UBERON:0002296!4.18e-07!3;UBERON:0005602!4.18e-07!3;UBERON:0001179!4.18e-07!3;UBERON:0006293!4.18e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.73e-11;10!UBERON:0000178;7.89e-08;15!UBERON:0000179;7.89e-08;15!UBERON:0000463;7.89e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.73e-11,10;UBERON:0000358,1.73e-11,10;UBERON:0000307,1.73e-11,10;UBERON:0000091,1.73e-11,10;UBERON:0000087,1.73e-11,10;UBERON:0007010,1.73e-11,10;UBERON:0007806,1.73e-11,10;UBERON:0008780,1.73e-11,10;UBERON:0005728,1.73e-11,10;UBERON:0002390,1.55e-10,98;UBERON:0003061,1.55e-10,98;UBERON:0002193,1.89e-09,108;UBERON:0000178,7.89e-08,15;UBERON:0000179,7.89e-08,15;UBERON:0000463,7.89e-08,15;UBERON:0002371,9.98e-07,76 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1130724598361,5.41863890369642,5.35233312933019,0,0,0.154816123316076,0,0,0,0,1.42169232487422,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689491361473237,1.93645405075148,1.35426486594342,0.188242339542605,0,0,0.306083892370903,0.641858054152187,0.639337125799041,0,0,0,1.45104619314292,2.26954089876456,1.86846674698672,0,0,0.434377689410233,0,1.47311054395026,4.1140110367315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0.221533894583621,0.541607727530031,0,0.130059347559878,0,0,0,0,0,0,0,0,0.68725489096526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,144.109268538782,96.3798723782722,101.811400767819,0,0,0,0,0,0,0,0,0,0,0.450970258243478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28617996577618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.75778305423922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.199882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,4.48795889224526 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1130724598361,5.41863890369642,5.35233312933019,0,0,0.154816123316076,0,0,0,0,1.42169232487422,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689491361473237,1.93645405075148,1.35426486594342,0.188242339542605,0,0,0.306083892370903,0.641858054152187,0.639337125799041,0,0,0,1.45104619314292,2.26954089876456,1.86846674698672,0,0,0.434377689410233,0,1.47311054395026,4.1140110367315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0.221533894583621,0.541607727530031,0,0.130059347559878,0,0,0,0,0,0,0,0,0.68725489096526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,144.109268538782,96.3798723782722,101.811400767819,0,0,0,0,0,0,0,0,0,0,0.450970258243478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28617996577618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.75778305423922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.199882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,4.48795889224526 | ||
|short_description=p1@ENST00000465390,p1@ENST00000467945,p1@ENST00000468736,p1@ENST00000489205 | |short_description=p1@ENST00000465390,p1@ENST00000467945,p1@ENST00000468736,p1@ENST00000489205 | ||
}} | }} |
Latest revision as of 16:57, 28 July 2015
Short description: | p1@ENST00000465390, p1@ENST00000467945, p1@ENST00000468736, p1@ENST00000489205 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000465390_5end, CAGE_peak_1_at_ENST00000467945_5end, CAGE_peak_1_at_ENST00000468736_5end, CAGE_peak_1_at_ENST00000489205_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 5bp_to_ENST00000465390, ENST00000467945, ENST00000468736, ENST00000489205_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.73e-11 | 10 |
blastocyst | 1.73e-11 | 10 |
blastula | 1.73e-11 | 10 |
bilaminar disc | 1.73e-11 | 10 |
inner cell mass | 1.73e-11 | 10 |
cleaving embryo | 1.73e-11 | 10 |
connecting stalk | 1.73e-11 | 10 |
inner cell mass derived epiblast | 1.73e-11 | 10 |
extraembryonic mesoderm | 1.73e-11 | 10 |
hematopoietic system | 1.55e-10 | 98 |
blood island | 1.55e-10 | 98 |
hemolymphoid system | 1.89e-09 | 108 |
blood | 7.89e-08 | 15 |
haemolymphatic fluid | 7.89e-08 | 15 |
organism substance | 7.89e-08 | 15 |
bone marrow | 9.98e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.76e-13 | 1 |
monogenic disease | 3.76e-13 | 1 |
xeroderma pigmentosum | 3.76e-13 | 1 |
anemia | 4.77e-13 | 1 |
hematopoietic system disease | 3.70e-07 | 2 |