FFCP PHASE1:Hg19::chr3:139035972..139036016,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:139035972..139036016,- | |||
|coexpression_cluster_id=C367 | |||
|description=CAGE_peak_at_chr3:139035972..139036016,- | |description=CAGE_peak_at_chr3:139035972..139036016,- | ||
|id=chr3:139035972..139036016,- | |id=chr3:139035972..139036016,- | ||
|ontology_enrichment_celltype=CL:0000322!1.10e-09!3 | |ontology_enrichment_celltype=CL:0000322!1.10e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0000322;5.96e-34;3!CL:0002202;2.45e-12;9!CL:0002632;2.45e-12;9!CL:0002368;5.70e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,5.96e-34,3;CL:0002202,2.45e-12,9;CL:0002632,2.45e-12,9;CL:0002368,5.70e-09,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:4929!6.43e-14!2;DOID:3910!7.30e-14!2;DOID:305!1.62e-08!106;DOID:1324!1.27e-07!15;DOID:0050615!3.34e-07!16 | |ontology_enrichment_disease=DOID:4929!6.43e-14!2;DOID:3910!7.30e-14!2;DOID:305!1.62e-08!106;DOID:1324!1.27e-07!15;DOID:0050615!3.34e-07!16 | ||
|ontology_enrichment_disease_v019=DOID:4929;2.74e-50;2!DOID:3910;4.52e-50;2!DOID:3908;5.15e-21;5!DOID:1325;1.91e-15;7!DOID:3904;1.91e-15;7!DOID:3905;2.45e-12;9!DOID:3119;1.86e-08;14!DOID:1324;5.93e-08;15!DOID:0050615;1.54e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,2.74e-50,2;DOID:3910,4.52e-50,2;DOID:3908,5.15e-21,5;DOID:1325,1.91e-15,7;DOID:3904,1.91e-15,7;DOID:3905,2.45e-12,9;DOID:3119,1.86e-08,14;DOID:1324,5.93e-08,15;DOID:0050615,1.54e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0004913!2.16e-26!1;UBERON:0003703!2.16e-26!1;UBERON:0001174!2.16e-26!1;UBERON:0004914!2.16e-26!1;UBERON:0002394!7.64e-26!4;UBERON:0003928!7.64e-26!4;UBERON:0002294!3.06e-15!7;UBERON:0001173!3.06e-15!7;UBERON:0004912!3.06e-15!7;UBERON:0004903!7.30e-14!2;UBERON:0002173!7.30e-14!2;UBERON:0002186!7.30e-14!2;UBERON:0004821!1.10e-09!3;UBERON:0003215!1.10e-09!3;UBERON:0002299!1.10e-09!3;UBERON:0006524!1.10e-09!3;UBERON:0008874!1.10e-09!3;UBERON:0002169!1.10e-09!3;UBERON:0004894!1.10e-09!3;UBERON:0007499!1.10e-09!25;UBERON:0000058!2.45e-09!26;UBERON:0009856!2.45e-09!26 | |ontology_enrichment_uberon=UBERON:0004913!2.16e-26!1;UBERON:0003703!2.16e-26!1;UBERON:0001174!2.16e-26!1;UBERON:0004914!2.16e-26!1;UBERON:0002394!7.64e-26!4;UBERON:0003928!7.64e-26!4;UBERON:0002294!3.06e-15!7;UBERON:0001173!3.06e-15!7;UBERON:0004912!3.06e-15!7;UBERON:0004903!7.30e-14!2;UBERON:0002173!7.30e-14!2;UBERON:0002186!7.30e-14!2;UBERON:0004821!1.10e-09!3;UBERON:0003215!1.10e-09!3;UBERON:0002299!1.10e-09!3;UBERON:0006524!1.10e-09!3;UBERON:0008874!1.10e-09!3;UBERON:0002169!1.10e-09!3;UBERON:0004894!1.10e-09!3;UBERON:0007499!1.10e-09!25;UBERON:0000058!2.45e-09!26;UBERON:0009856!2.45e-09!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0004913;9.37e-99;1!UBERON:0003703;9.37e-99;1!UBERON:0001174;9.37e-99;1!UBERON:0004914;9.37e-99;1!UBERON:0004903;4.52e-50;2!UBERON:0002173;4.52e-50;2!UBERON:0002186;4.52e-50;2!UBERON:0000058;2.00e-40;10!UBERON:0002114;4.27e-34;2!UBERON:0004821;5.96e-34;3!UBERON:0007499;5.96e-34;3!UBERON:0003215;5.96e-34;3!UBERON:0010368;5.96e-34;3!UBERON:0009911;5.96e-34;3!UBERON:0002299;5.96e-34;3!UBERON:0006524;5.96e-34;3!UBERON:0008874;5.96e-34;3!UBERON:0002169;5.96e-34;3!UBERON:0004894;5.96e-34;3!UBERON:0002394;5.56e-26;4!UBERON:0003928;5.56e-26;4!UBERON:0009856;7.14e-26;4!UBERON:0002108;4.21e-21;4!UBERON:0002294;1.65e-15;7!UBERON:0001173;1.65e-15;7!UBERON:0007196;5.93e-08;15!UBERON:0001558;5.93e-08;15!UBERON:0000160;7.18e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,9.37e-99,1;UBERON:0003703,9.37e-99,1;UBERON:0001174,9.37e-99,1;UBERON:0004914,9.37e-99,1;UBERON:0004903,4.52e-50,2;UBERON:0002173,4.52e-50,2;UBERON:0002186,4.52e-50,2;UBERON:0002114,4.27e-34,2;UBERON:0004821,5.96e-34,3;UBERON:0003215,5.96e-34,3;UBERON:0010368,5.96e-34,3;UBERON:0009911,5.96e-34,3;UBERON:0002299,5.96e-34,3;UBERON:0006524,5.96e-34,3;UBERON:0008874,5.96e-34,3;UBERON:0002169,5.96e-34,3;UBERON:0004894,5.96e-34,3;UBERON:0000058,5.37e-22,19;UBERON:0002108,4.21e-21,4;UBERON:0002394,7.67e-18,6;UBERON:0003928,7.67e-18,6;UBERON:0007499,4.64e-17,25;UBERON:0009856,1.86e-16,26;UBERON:0002294,2.19e-12,9;UBERON:0001173,2.19e-12,9;UBERON:0004912,2.19e-12,9;UBERON:0007196,5.93e-08,15;UBERON:0001558,5.93e-08,15;UBERON:0000160,7.18e-07,17 | |||
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|short_description=p@chr3:139035972..139036016,- | |short_description=p@chr3:139035972..139036016,- | ||
}} | }} |
Latest revision as of 16:18, 29 July 2015
Short description: | p@chr3:139035972..139036016, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:139035972..139036016, - |
Coexpression cluster: | C367_papillotubular_Macrophage_clear_pharyngeal_Renal_endometrial_tubular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 5.96e-34 | 3 |
epithelial cell of tracheobronchial tree | 2.45e-12 | 9 |
epithelial cell of lower respiratory tract | 2.45e-12 | 9 |
respiratory epithelial cell | 5.70e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 9.37e-99 | 1 |
extrahepatic bile duct | 9.37e-99 | 1 |
common bile duct | 9.37e-99 | 1 |
duodenal papilla | 9.37e-99 | 1 |
bronchoalveolar duct junction | 4.52e-50 | 2 |
alveolar duct | 4.52e-50 | 2 |
bronchiole | 4.52e-50 | 2 |
duodenum | 4.27e-34 | 2 |
pulmonary alveolus epithelium | 5.96e-34 | 3 |
alveolus | 5.96e-34 | 3 |
pulmonary lobule | 5.96e-34 | 3 |
lobule | 5.96e-34 | 3 |
alveolus of lung | 5.96e-34 | 3 |
alveolar system | 5.96e-34 | 3 |
pulmonary acinus | 5.96e-34 | 3 |
alveolar sac | 5.96e-34 | 3 |
alveolar wall | 5.96e-34 | 3 |
duct | 5.37e-22 | 19 |
small intestine | 4.21e-21 | 4 |
bile duct | 7.67e-18 | 6 |
digestive system duct | 7.67e-18 | 6 |
epithelial sac | 4.64e-17 | 25 |
sac | 1.86e-16 | 26 |
biliary system | 2.19e-12 | 9 |
biliary tree | 2.19e-12 | 9 |
biliary bud | 2.19e-12 | 9 |
tracheobronchial tree | 5.93e-08 | 15 |
lower respiratory tract | 5.93e-08 | 15 |
intestine | 7.18e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 2.74e-50 | 2 |
lung adenocarcinoma | 4.52e-50 | 2 |
non-small cell lung carcinoma | 5.15e-21 | 5 |
bronchus cancer | 1.91e-15 | 7 |
bronchogenic carcinoma | 1.91e-15 | 7 |
lung carcinoma | 2.45e-12 | 9 |
gastrointestinal system cancer | 1.86e-08 | 14 |
lung cancer | 5.93e-08 | 15 |
respiratory system cancer | 1.54e-07 | 16 |