FF:11791-124B9: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13202
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	11
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005479

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13202		CAGE		DRX008187		DRR009059

Accession ID Hg19

Library id		BAM		CTSS
CNhs13202		DRZ000484		DRZ001869

Accession ID Hg38

Library id		BAM		CTSS
CNhs13202		DRZ011834		DRZ013219

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.111
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.137
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.325
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.0553
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.111
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.334
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.237
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.832
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0691
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0826
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0859
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.111
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.728
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.497
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.513
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.555
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.199
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.629
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.438
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.111
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.215
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.111
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.199
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.976
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.89
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13202

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.13302e-9
MA0003.1	MA0003.1	0.705
MA0004.1	MA0004.1	0.822
MA0006.1	MA0006.1	0.445
MA0007.1	MA0007.1	0.678
MA0009.1	MA0009.1	0.283
MA0014.1	MA0014.1	0.939
MA0017.1	MA0017.1	0.0534
MA0018.2	MA0018.2	0.341
MA0019.1	MA0019.1	0.729
MA0024.1	MA0024.1	0.253
MA0025.1	MA0025.1	0.192
MA0027.1	MA0027.1	0.663
MA0028.1	MA0028.1	3.63396e-4
MA0029.1	MA0029.1	0.375
MA0030.1	MA0030.1	0.593
MA0031.1	MA0031.1	0.296
MA0035.2	MA0035.2	0.044
MA0038.1	MA0038.1	0.15
MA0039.2	MA0039.2	0.54
MA0040.1	MA0040.1	0.155
MA0041.1	MA0041.1	0.135
MA0042.1	MA0042.1	0.487
MA0043.1	MA0043.1	0.0218
MA0046.1	MA0046.1	0.194
MA0047.2	MA0047.2	0.373
MA0048.1	MA0048.1	0.706
MA0050.1	MA0050.1	1.90419e-6
MA0051.1	MA0051.1	0.0131
MA0052.1	MA0052.1	0.0032
MA0055.1	MA0055.1	0.936
MA0057.1	MA0057.1	0.842
MA0058.1	MA0058.1	0.935
MA0059.1	MA0059.1	0.367
MA0060.1	MA0060.1	0.847
MA0061.1	MA0061.1	0.0141
MA0062.2	MA0062.2	3.05954e-12
MA0065.2	MA0065.2	0.0209
MA0066.1	MA0066.1	0.116
MA0067.1	MA0067.1	0.767
MA0068.1	MA0068.1	0.11
MA0069.1	MA0069.1	0.511
MA0070.1	MA0070.1	0.647
MA0071.1	MA0071.1	0.444
MA0072.1	MA0072.1	0.839
MA0073.1	MA0073.1	0.797
MA0074.1	MA0074.1	0.726
MA0076.1	MA0076.1	6.13786e-6
MA0077.1	MA0077.1	0.0636
MA0078.1	MA0078.1	0.578
MA0079.2	MA0079.2	0.34
MA0080.2	MA0080.2	1.04803e-13
MA0081.1	MA0081.1	0.0235
MA0083.1	MA0083.1	0.00923
MA0084.1	MA0084.1	0.805
MA0087.1	MA0087.1	0.236
MA0088.1	MA0088.1	0.0457
MA0090.1	MA0090.1	7.31704e-4
MA0091.1	MA0091.1	0.649
MA0092.1	MA0092.1	0.576
MA0093.1	MA0093.1	0.767
MA0099.2	MA0099.2	1.41911e-4
MA0100.1	MA0100.1	0.135
MA0101.1	MA0101.1	0.773
MA0102.2	MA0102.2	0.367
MA0103.1	MA0103.1	0.0666
MA0104.2	MA0104.2	0.185
MA0105.1	MA0105.1	1.61814e-6
MA0106.1	MA0106.1	0.979
MA0107.1	MA0107.1	0.953
MA0108.2	MA0108.2	7.41042e-15
MA0111.1	MA0111.1	0.088
MA0112.2	MA0112.2	0.0383
MA0113.1	MA0113.1	0.833
MA0114.1	MA0114.1	0.159
MA0115.1	MA0115.1	0.447
MA0116.1	MA0116.1	1.73536e-5
MA0117.1	MA0117.1	0.835
MA0119.1	MA0119.1	0.722
MA0122.1	MA0122.1	0.9
MA0124.1	MA0124.1	0.63
MA0125.1	MA0125.1	0.363
MA0131.1	MA0131.1	0.462
MA0135.1	MA0135.1	0.0966
MA0136.1	MA0136.1	1.08459e-24
MA0137.2	MA0137.2	0.193
MA0138.2	MA0138.2	0.635
MA0139.1	MA0139.1	0.0184
MA0140.1	MA0140.1	0.0702
MA0141.1	MA0141.1	0.597
MA0142.1	MA0142.1	0.461
MA0143.1	MA0143.1	0.204
MA0144.1	MA0144.1	0.291
MA0145.1	MA0145.1	0.748
MA0146.1	MA0146.1	0.302
MA0147.1	MA0147.1	0.151
MA0148.1	MA0148.1	0.847
MA0149.1	MA0149.1	0.0909
MA0150.1	MA0150.1	0.122
MA0152.1	MA0152.1	0.0154
MA0153.1	MA0153.1	0.552
MA0154.1	MA0154.1	0.00541
MA0155.1	MA0155.1	0.793
MA0156.1	MA0156.1	3.14632e-21
MA0157.1	MA0157.1	0.066
MA0159.1	MA0159.1	0.209
MA0160.1	MA0160.1	0.305
MA0162.1	MA0162.1	0.725
MA0163.1	MA0163.1	1.27238e-14
MA0164.1	MA0164.1	0.794
MA0258.1	MA0258.1	0.0207
MA0259.1	MA0259.1	0.444

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13202

Novel motif	Logo	P-value
1	1	0.117
10	10	0.0102
100	100	0.838
101	101	0.141
102	102	0.64
103	103	0.131
104	104	0.582
105	105	0.114
106	106	0.382
107	107	0.552
108	108	0.674
109	109	0.0662
11	11	0.0401
110	110	0.348
111	111	0.259
112	112	0.163
113	113	0.532
114	114	0.165
115	115	0.0757
116	116	0.982
117	117	0.0112
118	118	0.472
119	119	0.494
12	12	0.648
120	120	0.511
121	121	0.859
122	122	0.366
123	123	0.00547
124	124	0.0771
125	125	0.886
126	126	0.47
127	127	0.344
128	128	0.538
129	129	0.115
13	13	0.458
130	130	0.951
131	131	0.517
132	132	0.743
133	133	0.244
134	134	0.594
135	135	0.613
136	136	0.772
137	137	0.0878
138	138	0.201
139	139	0.279
14	14	0.59
140	140	0.0309
141	141	0.547
142	142	0.683
143	143	8.27297e-4
144	144	0.622
145	145	0.222
146	146	0.383
147	147	0.091
148	148	0.0356
149	149	0.96
15	15	0.108
150	150	0.646
151	151	0.512
152	152	0.319
153	153	0.788
154	154	0.778
155	155	0.0196
156	156	0.565
157	157	0.196
158	158	0.0732
159	159	0.73
16	16	0.545
160	160	0.249
161	161	0.145
162	162	0.126
163	163	0.907
164	164	0.147
165	165	0.13
166	166	0.659
167	167	0.138
168	168	0.223
169	169	0.368
17	17	0.79
18	18	0.569
19	19	0.767
2	2	0.791
20	20	0.963
21	21	0.271
22	22	0.877
23	23	0.732
24	24	0.712
25	25	0.0673
26	26	0.149
27	27	0.0832
28	28	0.577
29	29	0.0178
3	3	0.0343
30	30	0.299
31	31	0.897
32	32	0.552
33	33	0.334
34	34	0.903
35	35	0.104
36	36	0.0174
37	37	0.212
38	38	0.597
39	39	0.274
4	4	0.607
40	40	0.32
41	41	0.402
42	42	0.0618
43	43	0.314
44	44	0.311
45	45	0.66
46	46	0.0483
47	47	0.0106
48	48	0.056
49	49	0.118
5	5	0.417
50	50	0.866
51	51	0.479
52	52	0.397
53	53	0.29
54	54	0.699
55	55	0.537
56	56	0.408
57	57	0.264
58	58	0.0827
59	59	0.264
6	6	0.795
60	60	0.38
61	61	0.14
62	62	0.0263
63	63	0.512
64	64	0.112
65	65	0.733
66	66	0.943
67	67	0.743
68	68	0.75
69	69	0.815
7	7	0.161
70	70	0.0559
71	71	0.0198
72	72	0.0963
73	73	0.69
74	74	0.689
75	75	0.0156
76	76	0.543
77	77	0.648
78	78	0.026
79	79	0.239
8	8	0.383
80	80	0.0261
81	81	0.436
82	82	0.0597
83	83	0.505
84	84	0.278
85	85	0.829
86	86	0.267
87	87	0.897
88	88	0.898
89	89	0.73
9	9	0.68
90	90	0.0148
91	91	0.398
92	92	0.289
93	93	0.267
94	94	0.0538
95	95	0.0621
96	96	0.0771
97	97	0.341
98	98	0.316
99	99	0.27

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13202

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000078,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002050,UBERON:0002193,UBERON:0002342,UBERON:0002346,UBERON:0002368,UBERON:0002370,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0002532,UBERON:0003075,UBERON:0003104,UBERON:0003295,UBERON:0003351,UBERON:0003408,UBERON:0003929,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0004185,UBERON:0004807,UBERON:0004921,UBERON:0005057,UBERON:0005058,UBERON:0005291,UBERON:0005423,UBERON:0005428,UBERON:0005434,UBERON:0005562,UBERON:0005911,UBERON:0006562,UBERON:0006598,UBERON:0007026,UBERON:0007284,UBERON:0007690,UBERON:0009113,UBERON:0009142,UBERON:0009145
+|DRA_sample_Accession=CAGE@SAMD00005479
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000805,CL:0000806,CL:0000807,CL:0000808,CL:0000809,CL:0000810,CL:0000813,CL:0000827,CL:0000837,CL:0000838,CL:0000893,CL:0000894,CL:0000895,CL:0000896,CL:0000897,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002425,CL:0002427,CL:0002428,CL:0002429,CL:0002431,CL:0002432,CL:0002433,CL:0002436,CL:0002489
+|accession_numbers=CAGE;DRX008187;DRR009059;DRZ000484;DRZ001869;DRZ011834;DRZ013219
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Previously: CD4-positiveCD25-CD45RA+ memory conventional T cells expanded, donor1. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
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DB2;;chr7:99097863..99097936,-!p1@ZNF394!0.36!20.29!ZNF394;;chr11:67007477..67007493,+!p2@KDM2A!0.36!17.10!KDM2A;;chr2:113033164..113033219,+!p1@ZC3H6!0.36!17.10!ZC3H6;;chr19:37064145..37064216,-!p1@ZNF529!0.36!17.10!ZNF529;;chrX:70503529..70503549,+!p2@NONO!0.36!10.43!NONO;;chr19:19843900..19843928,-!p1@ZNF14!0.36!9.85!ZNF14;;chr6:27440837..27440912,-!p1@ZNF184!0.36!8.98!ZNF184;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.36!8.11!ZNF816;;chr1:40997285..40997352,+!p1@ZNF684!0.36!6.67!ZNF684;;chr19:19496577..19496619,+!p5@GATAD2A!0.36!6.38!GATAD2A;;chr9:2017063..2017144,+!p4@SMARCA2!0.36!5.80!SMARCA2;;chr14:64971288..64971316,-!p2@ZBTB25!0.36!5.80!ZBTB25;;chr13:20357110..20357121,-!p2@PSPC1!0.36!4.93!PSPC1;;chr1:78444714..78444725,-!p3@FUBP1!0.36!4.93!FUBP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.36!4.06!CARHSP1;;chr19:20150029..20150078,-!p3@ZNF682!0.36!2.90!ZNF682;;chr11:130184644..130184662,-!p5@ZBTB44!0.36!2.61!ZBTB44;;chr11:67007535..67007546,+!p7@KDM2A!0.36!2.32!KDM2A;;chr14:69262947..69262986,-!p3@ZFP36L1!0.36!1.74!ZFP36L1;;chr6:135502501..135502546,+!p1@MYB!0.36!1.74!MYB;;chr8:71316403..71316427,-!p6@NCOA2!0.36!1.74!NCOA2;;chr19:4067174..4067200,-!p9@ZBTB7A!0.36!1.74!ZBTB7A;;chr17:47866034..47866060,+!p1@KAT7!0.35!103.75!KAT7;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.35!90.13!TBX19;;chr20:47894569..47894799,-!p1@ZNFX1!0.35!53.90!ZNFX1;;chr7:152133059..152133102,-!p1@MLL3!0.35!31.88!MLL3;;chr10:38299546..38299686,+!p1@ZNF33A!0.35!28.98!ZNF33A;;chr11:9482551..9482580,+!p1@ZNF143!0.35!25.79!ZNF143;;chr1:22778337..22778356,+!p1@ZBTB40!0.35!24.34!ZBTB40;;chr19:53193731..53193767,-!p1@ZNF83!0.35!17.68!ZNF83;;chr9:99540335..99540388,-!p1@ZNF510!0.35!14.49!ZNF510;;chrX:131623044..131623089,-!p1@MBNL3!0.35!7.82!MBNL3;;chr3:114866084..114866118,-!p2@ZBTB20!0.35!6.67!ZBTB20;;chr19:37096194..37096235,+!p1@ZNF382!0.35!5.80!ZNF382;;chr7:64254834..64254854,+!p2@ZNF138!0.35!2.90!ZNF138;;chr16:68119440..68119480,+!p4@NFATC3!0.35!2.61!NFATC3;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.35!2.32!ZNF816;;chr7:92076714..92076729,+!p2@GATAD1!0.35!1.74!GATAD1;;chr19:12721725..12721758,+!p1@ZNF791!0.34!34.20!ZNF791;;chr12:95467267..95467350,-!p1@NR2C1!0.34!23.18!NR2C1;;chr12:498415..498492,-!p1@KDM5A!0.34!21.45!KDM5A;;chr16:29819403..29819442,+!p5@MAZ!0.34!15.94!MAZ;;chr19:45004556..45004581,-!p1@ZNF180!0.34!11.30!ZNF180;;chr3:23986824..23986848,+!p2@NR1D2!0.34!10.43!NR1D2;;chr16:29817433..29817468,+!p8@MAZ!0.34!5.51!MAZ;;chr19:40502938..40502987,+!p1@ZNF546!0.34!4.35!ZNF546;;chr7:21467642..21467671,+!p2@SP4!0.34!3.77!SP4;;chr19:36980455..36980469,-!p2@ZNF566!0.34!3.48!ZNF566;;chr16:3285119..3285133,-!p2@ZNF200!0.34!3.19!ZNF200;;chr11:615570..615721,-!p2@IRF7!0.34!3.19!IRF7;;chr3:101546827..101546847,+!p2@NFKBIZ!0.34!2.03!NFKBIZ;;chr19:49140595..49140607,-!p3@DBP!0.34!2.03!DBP;;chr10:21962268..21962272,+!p6@MLLT10!0.34!1.74!MLLT10;;chr7:6746529..6746591,-!p1@ZNF12!0.33!26.08!ZNF12;;chr19:52531600..52531685,-!p1@ZNF614!0.33!17.39!ZNF614;;chr10:21823128..21823216,+!p1@MLLT10!0.33!17.10!MLLT10;;chr4:38665769..38665801,+!p2@KLF3!0.33!16.81!KLF3;;chr20:25677465..25677497,-!p1@ZNF337!0.33!11.30!ZNF337;;chr9:95640300..95640345,-!p1@ZNF484!0.33!10.14!ZNF484;;chr2:178128199..178128245,-!p3@NFE2L2!0.33!9.85!NFE2L2;;chr10:97889784..97889827,+!p1@ZNF518A!0.33!8.69!ZNF518A;;chr11:65687362..65687436,+!p3@DRAP1!0.33!8.11!DRAP1;;chr19:47615477..47615491,-!p3@ZC3H4!0.33!7.82!ZC3H4;;chr19:57752022..57752108,+!p1@ZNF805!0.33!7.82!ZNF805;;chr9:73028332..73028385,-!p3@KLF9!0.33!6.09!KLF9;;chr19:44598534..44598559,+!p2@ZNF224!0.33!5.22!ZNF224;;chr19:12721790..12721810,+!p2@ZNF791!0.33!4.64!ZNF791;;chrX:129244885..129244926,-!p3@ELF4!0.33!4.06!ELF4;;chr19:53970970..53971021,+!p1@ZNF813!0.33!3.77!ZNF813;;chr20:52210368..52210384,-!p1@ZNF217!0.33!2.90!ZNF217;;chr7:128577972..128578047,+!p1@IRF5!0.33!2.32!IRF5;;chr17:46621311..46621332,-!p8@HOXB2!0.33!1.74!HOXB2;;chr14:99737996..99738007,-!p5@BCL11B!0.33!1.16!BCL11B;;chr16:29819579..29819591,+!p32@MAZ!0.33!1.16!MAZ;;chr19:16435735..16435773,+!p4@KLF2!0.33!1.16!KLF2;;chr19:19729458..19729469,-!p2@PBX4!0.33!1.16!PBX4;;chr19:36204309..36204335,+!p1@ZBTB32!0.33!1.16!ZBTB32;;chr19:37096126..37096137,-!p4@ZNF529!0.33!1.16!ZNF529;;chr6:152011695..152011709,+!p6@ESR1!0.33!1.16!ESR1;;chr9:117138946..117138968,-!p4@AKNA!0.33!1.16!AKNA;;chr19:54058073..54058088,+!p1@ZNF331!0.33!1.16!ZNF331;;chr1:14057463..14057496,+!p4@PRDM2!0.33!1.16!PRDM2;;chr1:211432862..211432871,+!p10@RCOR3!0.33!1.16!RCOR3;;chr1:23857674..23857685,-!p3@E2F2!0.33!1.16!E2F2;;chr1:25291678..25291685,-!p8@RUNX3!0.33!1.16!RUNX3;;chr10:31607335..31607354,+!p5@ZEB1!0.33!1.16!ZEB1;;chr10:8097295..8097320,+!p6@GATA3!0.33!1.16!GATA3;;chr10:8097321..8097348,+!p4@GATA3!0.33!1.16!GATA3;;chr11:128392258..128392264,-!p7@ETS1!0.33!1.16!ETS1;;chr11:62369084..62369093,-!p9@MTA2!0.33!1.16!MTA2;;chr12:6782377..6782382,-!p15@ZNF384!0.33!1.16!ZNF384;;chr13:74708208..74708220,-!p12@KLF12!0.33!1.16!KLF12;;chr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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011452,FF:11791-124B9
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11791-124B9
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13202
+|library_id_phase_based=2:CNhs13202
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11791
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11791
 |name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1
 |namespace=
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13202,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=2.8764
 |sample_age=25
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 69: / Line 91: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.93890189800765e-240!GO:0043227;membrane-bound organelle;2.12798351435349e-208!GO:0043231;intracellular membrane-bound organelle;5.02074150016879e-208!GO:0043226;organelle;4.63295931871127e-197!GO:0043229;intracellular organelle;2.35220751681837e-196!GO:0005737;cytoplasm;1.02800220682059e-144!GO:0044422;organelle part;3.58563424161835e-137!GO:0044446;intracellular organelle part;1.5961373753984e-135!GO:0005634;nucleus;2.5731974152167e-111!GO:0032991;macromolecular complex;4.21779746838975e-106!GO:0044237;cellular metabolic process;1.18567275109374e-104!GO:0043170;macromolecule metabolic process;3.90186564173013e-101!GO:0044238;primary metabolic process;1.57122107017942e-100!GO:0044444;cytoplasmic part;5.47280767753914e-100!GO:0030529;ribonucleoprotein complex;3.16853050736968e-87!GO:0044428;nuclear part;9.13421946684774e-84!GO:0003723;RNA binding;2.04730288222199e-79!GO:0043233;organelle lumen;2.40684868517791e-70!GO:0031974;membrane-enclosed lumen;2.40684868517791e-70!GO:0043283;biopolymer metabolic process;8.62732315852878e-69!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.44824912137626e-59!GO:0005739;mitochondrion;1.38387309925487e-56!GO:0010467;gene expression;5.28316610567801e-56!GO:0005515;protein binding;5.62162466003449e-56!GO:0006396;RNA processing;9.63511295792666e-55!GO:0043234;protein complex;1.79430508711207e-54!GO:0006412;translation;3.31822835327957e-52!GO:0019538;protein metabolic process;8.76182732998923e-50!GO:0031981;nuclear lumen;3.17004404115978e-49!GO:0005840;ribosome;8.16612150171507e-49!GO:0033036;macromolecule localization;9.75543054035111e-48!GO:0044267;cellular protein metabolic process;6.16701036632314e-47!GO:0016071;mRNA metabolic process;1.1512196176498e-46!GO:0044260;cellular macromolecule metabolic process;3.78809028965547e-46!GO:0015031;protein transport;1.95879847022235e-45!GO:0006259;DNA metabolic process;9.3246066156063e-44!GO:0008104;protein localization;1.07689333334267e-43!GO:0045184;establishment of protein localization;2.97598446802238e-43!GO:0003735;structural constituent of ribosome;9.82501887116422e-43!GO:0003676;nucleic acid binding;2.34497150659192e-42!GO:0008380;RNA splicing;1.35849056492502e-40!GO:0006397;mRNA processing;1.73346371559149e-40!GO:0031090;organelle membrane;1.79857111604131e-40!GO:0044429;mitochondrial part;2.42974953445385e-40!GO:0009059;macromolecule biosynthetic process;1.24078092763207e-39!GO:0031967;organelle envelope;4.66858044990519e-39!GO:0031975;envelope;1.0255690293759e-38!GO:0033279;ribosomal subunit;3.70460163443268e-37!GO:0005829;cytosol;3.79106061756745e-36!GO:0016043;cellular component organization and biogenesis;1.7277074045133e-35!GO:0046907;intracellular transport;3.81950096966239e-34!GO:0009058;biosynthetic process;5.30499324885696e-33!GO:0044249;cellular biosynthetic process;5.76760068374186e-33!GO:0006886;intracellular protein transport;2.10094633473491e-32!GO:0005654;nucleoplasm;2.75163102145564e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.77430602270508e-32!GO:0065003;macromolecular complex assembly;4.22105831740911e-32!GO:0007049;cell cycle;2.04240507860205e-30!GO:0000166;nucleotide binding;3.97870685997604e-30!GO:0005681;spliceosome;4.0176878000247e-30!GO:0006996;organelle organization and biogenesis;1.60777892648157e-29!GO:0043228;non-membrane-bound organelle;5.68912565897313e-29!GO:0043232;intracellular non-membrane-bound organelle;5.68912565897313e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.32870608335317e-29!GO:0016070;RNA metabolic process;1.03215492029879e-28!GO:0022607;cellular component assembly;8.91767430901405e-28!GO:0006974;response to DNA damage stimulus;1.55016383512708e-26!GO:0044445;cytosolic part;1.93569455907642e-26!GO:0005740;mitochondrial envelope;1.45103863507232e-25!GO:0005694;chromosome;3.17077481535563e-25!GO:0022402;cell cycle process;8.78172260094215e-25!GO:0019866;organelle inner membrane;1.53508535888203e-24!GO:0051641;cellular localization;1.95427713824339e-24!GO:0031966;mitochondrial membrane;3.02155833767443e-24!GO:0051649;establishment of cellular localization;4.33773547833004e-24!GO:0044451;nucleoplasm part;4.3617921303231e-24!GO:0006512;ubiquitin cycle;1.30440517529331e-23!GO:0044427;chromosomal part;5.50325536760403e-23!GO:0032553;ribonucleotide binding;1.44521198137083e-22!GO:0032555;purine ribonucleotide binding;1.44521198137083e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.07315286498164e-22!GO:0006915;apoptosis;3.07315286498164e-22!GO:0012501;programmed cell death;3.19233372919057e-22!GO:0006281;DNA repair;3.20483791905798e-22!GO:0005743;mitochondrial inner membrane;3.37915226099075e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.44353357046979e-22!GO:0016462;pyrophosphatase activity;3.57844482456352e-22!GO:0017076;purine nucleotide binding;7.93033336819634e-22!GO:0017111;nucleoside-triphosphatase activity;1.28255272739442e-21!GO:0008219;cell death;2.26944993729392e-21!GO:0016265;death;2.26944993729392e-21!GO:0051276;chromosome organization and biogenesis;5.73612375198305e-21!GO:0005524;ATP binding;1.0517247291503e-20!GO:0006119;oxidative phosphorylation;1.41110029364697e-20!GO:0016874;ligase activity;1.57888651504861e-20!GO:0022618;protein-RNA complex assembly;1.60629982924269e-20!GO:0032559;adenyl ribonucleotide binding;4.08647044191062e-20!GO:0000278;mitotic cell cycle;9.95330023558665e-20!GO:0015935;small ribosomal subunit;3.28156911162623e-19!GO:0030554;adenyl nucleotide binding;3.80687734536302e-19!GO:0044265;cellular macromolecule catabolic process;6.29349056101913e-19!GO:0015934;large ribosomal subunit;7.57914898596842e-19!GO:0043412;biopolymer modification;1.15961359992617e-18!GO:0031980;mitochondrial lumen;4.1244581411346e-18!GO:0005759;mitochondrial matrix;4.1244581411346e-18!GO:0044455;mitochondrial membrane part;5.15465944438581e-18!GO:0005730;nucleolus;6.56481697276706e-18!GO:0016887;ATPase activity;1.09178766340641e-17!GO:0042623;ATPase activity, coupled;1.84872859797586e-17!GO:0016604;nuclear body;2.61284690708e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;5.05494779081504e-17!GO:0008135;translation factor activity, nucleic acid binding;7.98757922389931e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.12700834698599e-16!GO:0043285;biopolymer catabolic process;1.35617303778464e-16!GO:0019941;modification-dependent protein catabolic process;1.37802806220974e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.37802806220974e-16!GO:0006323;DNA packaging;2.42893143578242e-16!GO:0006605;protein targeting;2.48805207147294e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.8037547053519e-16!GO:0042981;regulation of apoptosis;2.99586915680429e-16!GO:0006464;protein modification process;3.10656755582329e-16!GO:0044257;cellular protein catabolic process;3.11212482398276e-16!GO:0012505;endomembrane system;3.28090051926317e-16!GO:0051726;regulation of cell cycle;3.83816511084809e-16!GO:0009719;response to endogenous stimulus;4.3553074013751e-16!GO:0006913;nucleocytoplasmic transport;4.7079940648585e-16!GO:0043067;regulation of programmed cell death;5.17563417509658e-16!GO:0000087;M phase of mitotic cell cycle;5.63768142701947e-16!GO:0000074;regulation of progression through cell cycle;5.84565284006276e-16!GO:0022403;cell cycle phase;5.96602607041013e-16!GO:0051169;nuclear transport;9.52401743296441e-16!GO:0007067;mitosis;1.17666135005159e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.52634408496025e-15!GO:0008134;transcription factor binding;1.69738534366032e-15!GO:0009057;macromolecule catabolic process;2.63149951643774e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.47898260281217e-15!GO:0006457;protein folding;3.68499315431735e-15!GO:0043687;post-translational protein modification;5.2757746009968e-15!GO:0005746;mitochondrial respiratory chain;9.63630210609735e-15!GO:0000785;chromatin;1.86815383563646e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.88543944566488e-14!GO:0005635;nuclear envelope;2.16508003834018e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.67347417418917e-14!GO:0050794;regulation of cellular process;3.77684993812054e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.10489146762574e-14!GO:0000375;RNA splicing, via transesterification reactions;4.10489146762574e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.10489146762574e-14!GO:0006333;chromatin assembly or disassembly;4.75886021147704e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.5455046712374e-14!GO:0003954;NADH dehydrogenase activity;7.5455046712374e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.5455046712374e-14!GO:0016607;nuclear speck;1.16893109085552e-13!GO:0004386;helicase activity;1.21616811539753e-13!GO:0000279;M phase;1.80139929517627e-13!GO:0044248;cellular catabolic process;2.0648594637477e-13!GO:0031965;nuclear membrane;2.06978266672555e-13!GO:0051301;cell division;2.12744595502143e-13!GO:0006413;translational initiation;2.26143966341282e-13!GO:0003743;translation initiation factor activity;2.45269104704333e-13!GO:0048770;pigment granule;2.84709176111252e-13!GO:0042470;melanosome;2.84709176111252e-13!GO:0065004;protein-DNA complex assembly;6.81784576581472e-13!GO:0006260;DNA replication;7.00919358794938e-13!GO:0030163;protein catabolic process;1.30772659898007e-12!GO:0042254;ribosome biogenesis and assembly;1.36623365141383e-12!GO:0005761;mitochondrial ribosome;1.7130702085853e-12!GO:0000313;organellar ribosome;1.7130702085853e-12!GO:0044453;nuclear membrane part;3.85672381787051e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.311908417308e-12!GO:0042773;ATP synthesis coupled electron transport;4.311908417308e-12!GO:0008026;ATP-dependent helicase activity;6.10919549954408e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.13413494820857e-12!GO:0045271;respiratory chain complex I;7.13413494820857e-12!GO:0005747;mitochondrial respiratory chain complex I;7.13413494820857e-12!GO:0006446;regulation of translational initiation;1.37590882429841e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.06657861258636e-11!GO:0048193;Golgi vesicle transport;5.27046997377562e-11!GO:0017038;protein import;9.85834362554741e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.95037917818687e-11!GO:0006334;nucleosome assembly;1.01081099563693e-10!GO:0008639;small protein conjugating enzyme activity;1.01226371857062e-10!GO:0051186;cofactor metabolic process;1.27769649143994e-10!GO:0019787;small conjugating protein ligase activity;1.29856376391417e-10!GO:0051082;unfolded protein binding;1.46317367928263e-10!GO:0004842;ubiquitin-protein ligase activity;1.92928338993927e-10!GO:0016568;chromatin modification;2.00792894762198e-10!GO:0043566;structure-specific DNA binding;2.20975484886104e-10!GO:0005643;nuclear pore;2.50472639465224e-10!GO:0050657;nucleic acid transport;2.82550180621674e-10!GO:0051236;establishment of RNA localization;2.82550180621674e-10!GO:0050658;RNA transport;2.82550180621674e-10!GO:0006403;RNA localization;2.93770470960323e-10!GO:0031497;chromatin assembly;3.17856058048711e-10!GO:0006793;phosphorus metabolic process;3.57223351740053e-10!GO:0006796;phosphate metabolic process;3.57223351740053e-10!GO:0009259;ribonucleotide metabolic process;4.18642024486288e-10!GO:0016787;hydrolase activity;7.30728511365565e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.07306397238237e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.24546981989388e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.4137177575522e-10!GO:0044432;endoplasmic reticulum part;1.28395796848688e-09!GO:0009260;ribonucleotide biosynthetic process;1.42218541807781e-09!GO:0006164;purine nucleotide biosynthetic process;1.42986120825042e-09!GO:0003697;single-stranded DNA binding;1.47584574625377e-09!GO:0006163;purine nucleotide metabolic process;1.72468318874182e-09!GO:0019829;cation-transporting ATPase activity;1.9828948003919e-09!GO:0019222;regulation of metabolic process;3.2383390197678e-09!GO:0008565;protein transporter activity;3.61607453169827e-09!GO:0003712;transcription cofactor activity;3.69035498883441e-09!GO:0005794;Golgi apparatus;4.37142578705138e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.59878201120556e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.13311337885613e-09!GO:0006399;tRNA metabolic process;5.31494139053853e-09!GO:0005783;endoplasmic reticulum;5.60139219906935e-09!GO:0009150;purine ribonucleotide metabolic process;5.75678985217493e-09!GO:0050789;regulation of biological process;6.03313950439992e-09!GO:0065002;intracellular protein transport across a membrane;6.16092905908508e-09!GO:0016310;phosphorylation;6.5872807548016e-09!GO:0016881;acid-amino acid ligase activity;7.21076314110031e-09!GO:0046930;pore complex;9.47303837766818e-09!GO:0006732;coenzyme metabolic process;1.11681984237693e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.31286954571486e-08!GO:0006916;anti-apoptosis;1.40465354783799e-08!GO:0051028;mRNA transport;1.46698248899938e-08!GO:0043069;negative regulation of programmed cell death;1.50608242186266e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.53009225883838e-08!GO:0045786;negative regulation of progression through cell cycle;1.88667621026173e-08!GO:0016072;rRNA metabolic process;2.13738995328033e-08!GO:0043066;negative regulation of apoptosis;2.13825238736947e-08!GO:0005789;endoplasmic reticulum membrane;2.53100476350975e-08!GO:0006364;rRNA processing;2.62184949097386e-08!GO:0051170;nuclear import;3.29198935926565e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.35282619643295e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.50018749937757e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.02235482068355e-08!GO:0006917;induction of apoptosis;4.12803557011837e-08!GO:0016192;vesicle-mediated transport;5.08136950695936e-08!GO:0006606;protein import into nucleus;5.60576364629254e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.74546512545855e-08!GO:0007243;protein kinase cascade;6.03617676793264e-08!GO:0015986;ATP synthesis coupled proton transport;6.24339578348795e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.24339578348795e-08!GO:0012502;induction of programmed cell death;6.87444277177447e-08!GO:0048523;negative regulation of cellular process;6.99600087800409e-08!GO:0015078;hydrogen ion transmembrane transporter activity;9.28047778504991e-08!GO:0016740;transferase activity;1.12558669419148e-07!GO:0032446;protein modification by small protein conjugation;1.17789453344415e-07!GO:0051246;regulation of protein metabolic process;1.20100763974763e-07!GO:0016779;nucleotidyltransferase activity;1.31740222400398e-07!GO:0000786;nucleosome;1.47614017847403e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.52726520150579e-07!GO:0004298;threonine endopeptidase activity;1.71471574881004e-07!GO:0031323;regulation of cellular metabolic process;1.86054628576432e-07!GO:0043065;positive regulation of apoptosis;1.89093002329695e-07!GO:0009060;aerobic respiration;2.25719025159523e-07!GO:0019899;enzyme binding;2.54647562372923e-07!GO:0005768;endosome;2.5593575505257e-07!GO:0043068;positive regulation of programmed cell death;3.08153922891942e-07!GO:0009056;catabolic process;3.34844651218935e-07!GO:0065009;regulation of a molecular function;3.46086627428642e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.56804980195664e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.56804980195664e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.56804980195664e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.08334726465581e-07!GO:0006754;ATP biosynthetic process;4.16095590683087e-07!GO:0006753;nucleoside phosphate metabolic process;4.16095590683087e-07!GO:0016567;protein ubiquitination;4.26516856243906e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.48502603654564e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.48502603654564e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.92125161568696e-07!GO:0005813;centrosome;4.92812372628157e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.05195760211607e-07!GO:0006310;DNA recombination;5.34291629983113e-07!GO:0009055;electron carrier activity;5.45874930470083e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.61507073187058e-07!GO:0009141;nucleoside triphosphate metabolic process;5.81969902248279e-07!GO:0000775;chromosome, pericentric region;5.94666903472939e-07!GO:0043038;amino acid activation;5.94666903472939e-07!GO:0006418;tRNA aminoacylation for protein translation;5.94666903472939e-07!GO:0043039;tRNA aminoacylation;5.94666903472939e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.98155562406447e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.98155562406447e-07!GO:0015630;microtubule cytoskeleton;7.33526734141998e-07!GO:0006261;DNA-dependent DNA replication;8.13060788275872e-07!GO:0046034;ATP metabolic process;8.23116574035676e-07!GO:0005815;microtubule organizing center;8.23116574035676e-07!GO:0005819;spindle;8.52476586865644e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.59977770349117e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.59977770349117e-07!GO:0048519;negative regulation of biological process;1.26503820210431e-06!GO:0000245;spliceosome assembly;1.37239786884615e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.44970253696371e-06!GO:0015399;primary active transmembrane transporter activity;1.44970253696371e-06!GO:0030120;vesicle coat;1.49268745678587e-06!GO:0030662;coated vesicle membrane;1.49268745678587e-06!GO:0006350;transcription;1.52677356226468e-06!GO:0003713;transcription coactivator activity;1.52677356226468e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.82256733201521e-06!GO:0051188;cofactor biosynthetic process;1.86790928295808e-06!GO:0045333;cellular respiration;2.02952671761073e-06!GO:0000075;cell cycle checkpoint;2.12697517494663e-06!GO:0048475;coated membrane;2.46137475341087e-06!GO:0030117;membrane coat;2.46137475341087e-06!GO:0051168;nuclear export;2.51768519981227e-06!GO:0006366;transcription from RNA polymerase II promoter;2.53983680289523e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.56798306358347e-06!GO:0045259;proton-transporting ATP synthase complex;2.69316687734043e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.48895443067437e-06!GO:0006461;protein complex assembly;4.25057482728561e-06!GO:0000151;ubiquitin ligase complex;4.3056437866885e-06!GO:0016563;transcription activator activity;5.14919880255907e-06!GO:0003724;RNA helicase activity;5.29012137228921e-06!GO:0006613;cotranslational protein targeting to membrane;5.48910028830821e-06!GO:0008632;apoptotic program;6.62788004307427e-06!GO:0006099;tricarboxylic acid cycle;6.99808050848113e-06!GO:0046356;acetyl-CoA catabolic process;6.99808050848113e-06!GO:0006752;group transfer coenzyme metabolic process;7.13669775386118e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.49240555328552e-06!GO:0016363;nuclear matrix;8.74575403016202e-06!GO:0048522;positive regulation of cellular process;8.93377629361237e-06!GO:0005793;ER-Golgi intermediate compartment;9.53550422125529e-06!GO:0003690;double-stranded DNA binding;1.02368470831483e-05!GO:0006401;RNA catabolic process;1.03393848328321e-05!GO:0010468;regulation of gene expression;1.29482547757301e-05!GO:0008270;zinc ion binding;1.43032727395587e-05!GO:0007242;intracellular signaling cascade;1.47096923892163e-05!GO:0006084;acetyl-CoA metabolic process;1.49257152010974e-05!GO:0005657;replication fork;1.73897436177583e-05!GO:0003677;DNA binding;2.16378397479271e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.18599192288803e-05!GO:0031324;negative regulation of cellular metabolic process;2.33505547660681e-05!GO:0065007;biological regulation;2.57741705192798e-05!GO:0004674;protein serine/threonine kinase activity;2.72437992849242e-05!GO:0051329;interphase of mitotic cell cycle;2.78396303203794e-05!GO:0009117;nucleotide metabolic process;2.95878528627023e-05!GO:0051325;interphase;3.21886832017597e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.27359435373821e-05!GO:0007005;mitochondrion organization and biogenesis;3.42353506956033e-05!GO:0009108;coenzyme biosynthetic process;3.47188354823669e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.52811644274568e-05!GO:0007088;regulation of mitosis;3.62282425787431e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.12188581118446e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.9202840218954e-05!GO:0009109;coenzyme catabolic process;5.35820014956577e-05!GO:0006612;protein targeting to membrane;5.9451810528686e-05!GO:0006402;mRNA catabolic process;6.57414446819368e-05!GO:0008094;DNA-dependent ATPase activity;8.33763815118567e-05!GO:0008186;RNA-dependent ATPase activity;8.57851577528477e-05!GO:0005762;mitochondrial large ribosomal subunit;8.91424850866395e-05!GO:0000315;organellar large ribosomal subunit;8.91424850866395e-05!GO:0003899;DNA-directed RNA polymerase activity;9.65009387794188e-05!GO:0005773;vacuole;9.68664634264034e-05!GO:0043623;cellular protein complex assembly;0.000108630029129087!GO:0051427;hormone receptor binding;0.000113432710013059!GO:0006302;double-strand break repair;0.000113432710013059!GO:0008234;cysteine-type peptidase activity;0.000124897002909685!GO:0030384;phosphoinositide metabolic process;0.000126491855963652!GO:0051187;cofactor catabolic process;0.000134294000603472!GO:0044440;endosomal part;0.00013890423870958!GO:0010008;endosome membrane;0.00013890423870958!GO:0009892;negative regulation of metabolic process;0.000148735934533787!GO:0016564;transcription repressor activity;0.000174374555147792!GO:0005770;late endosome;0.000178786328006787!GO:0003684;damaged DNA binding;0.000181078923300502!GO:0050790;regulation of catalytic activity;0.000189683271420457!GO:0008654;phospholipid biosynthetic process;0.000189783170480555!GO:0005525;GTP binding;0.000194081220995765!GO:0032774;RNA biosynthetic process;0.000196445299556491!GO:0009615;response to virus;0.000209402904734921!GO:0005798;Golgi-associated vesicle;0.000209754361464811!GO:0003678;DNA helicase activity;0.00021202029467441!GO:0005885;Arp2/3 protein complex;0.000220081188404665!GO:0000776;kinetochore;0.00022120533282712!GO:0009967;positive regulation of signal transduction;0.00022204026043875!GO:0007093;mitotic cell cycle checkpoint;0.000222660290758456!GO:0043021;ribonucleoprotein binding;0.000225110111897596!GO:0035257;nuclear hormone receptor binding;0.000229154577865163!GO:0044431;Golgi apparatus part;0.000235951486996697!GO:0006818;hydrogen transport;0.00024295650300349!GO:0006351;transcription, DNA-dependent;0.000245503660409378!GO:0015992;proton transport;0.000248353236946857!GO:0000323;lytic vacuole;0.000254442384691379!GO:0005764;lysosome;0.000254442384691379!GO:0004004;ATP-dependent RNA helicase activity;0.000262642800053283!GO:0005667;transcription factor complex;0.00026687284394849!GO:0004518;nuclease activity;0.000304703933950979!GO:0007051;spindle organization and biogenesis;0.000307318360875358!GO:0006417;regulation of translation;0.00031872073134847!GO:0006891;intra-Golgi vesicle-mediated transport;0.000343750664359346!GO:0003729;mRNA binding;0.000351820482427884!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000359332829577404!GO:0003682;chromatin binding;0.000373702538800523!GO:0045449;regulation of transcription;0.000380216693010864!GO:0007050;cell cycle arrest;0.000402045458411711!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000403777992152372!GO:0006289;nucleotide-excision repair;0.000415318792889209!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00044584327397986!GO:0006650;glycerophospholipid metabolic process;0.000448944420339239!GO:0005769;early endosome;0.000486040988570249!GO:0006383;transcription from RNA polymerase III promoter;0.000488408570411079!GO:0046489;phosphoinositide biosynthetic process;0.000556375631633977!GO:0003924;GTPase activity;0.000564516695781136!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000582261529190415!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000640009473050012!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000699612069411558!GO:0051052;regulation of DNA metabolic process;0.000712770410408471!GO:0007059;chromosome segregation;0.000714966097562385!GO:0048518;positive regulation of biological process;0.000749656983751809!GO:0051252;regulation of RNA metabolic process;0.000766131623196884!GO:0019843;rRNA binding;0.000891174402073161!GO:0000314;organellar small ribosomal subunit;0.000905745030956585!GO:0005763;mitochondrial small ribosomal subunit;0.000905745030956585!GO:0031326;regulation of cellular biosynthetic process;0.00105540927907768!GO:0046914;transition metal ion binding;0.00109458632604673!GO:0004527;exonuclease activity;0.00119289627501585!GO:0032561;guanyl ribonucleotide binding;0.00119308008305659!GO:0019001;guanyl nucleotide binding;0.00119308008305659!GO:0016741;transferase activity, transferring one-carbon groups;0.00127497550372207!GO:0008168;methyltransferase activity;0.00127532037124658!GO:0046474;glycerophospholipid biosynthetic process;0.00133840144148306!GO:0006611;protein export from nucleus;0.00155523486034291!GO:0048500;signal recognition particle;0.00157417992421329!GO:0047485;protein N-terminus binding;0.00158863896318482!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00165748934226648!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00165748934226648!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00165748934226648!GO:0016853;isomerase activity;0.00170754507767964!GO:0000209;protein polyubiquitination;0.00176876967413201!GO:0060090;molecular adaptor activity;0.00178566128214793!GO:0007006;mitochondrial membrane organization and biogenesis;0.00182454209996162!GO:0000082;G1/S transition of mitotic cell cycle;0.0018638775306253!GO:0005637;nuclear inner membrane;0.00191927970484424!GO:0016481;negative regulation of transcription;0.00192399790049275!GO:0043681;protein import into mitochondrion;0.00196989834636204!GO:0006352;transcription initiation;0.00202087011506113!GO:0015631;tubulin binding;0.00206241552096433!GO:0009165;nucleotide biosynthetic process;0.00210942917920796!GO:0030658;transport vesicle membrane;0.00219234619947243!GO:0031072;heat shock protein binding;0.00219776344919592!GO:0003711;transcription elongation regulator activity;0.00228760233134502!GO:0000139;Golgi membrane;0.00239654288996861!GO:0006414;translational elongation;0.00241712299386241!GO:0008033;tRNA processing;0.00243217857462006!GO:0006405;RNA export from nucleus;0.00256429584332468!GO:0008312;7S RNA binding;0.00264626792310833!GO:0051092;activation of NF-kappaB transcription factor;0.00286365711749779!GO:0006607;NLS-bearing substrate import into nucleus;0.00289710877464631!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00291255459337352!GO:0045047;protein targeting to ER;0.00291255459337352!GO:0042802;identical protein binding;0.00301631565463759!GO:0008624;induction of apoptosis by extracellular signals;0.0030955974944023!GO:0046822;regulation of nucleocytoplasmic transport;0.00319725401599919!GO:0044452;nucleolar part;0.00348278839417821!GO:0005048;signal sequence binding;0.00357512912602393!GO:0048468;cell development;0.00363289831211446!GO:0005684;U2-dependent spliceosome;0.00366709680985742!GO:0032508;DNA duplex unwinding;0.00370034113964794!GO:0032392;DNA geometric change;0.00370034113964794!GO:0019867;outer membrane;0.00382898673603875!GO:0051087;chaperone binding;0.00384813233471908!GO:0042110;T cell activation;0.00384813233471908!GO:0008022;protein C-terminus binding;0.00384985790571357!GO:0022415;viral reproductive process;0.00397306485249853!GO:0016251;general RNA polymerase II transcription factor activity;0.00401649291216311!GO:0030118;clathrin coat;0.00406293442659103!GO:0051920;peroxiredoxin activity;0.00411243077027749!GO:0030660;Golgi-associated vesicle membrane;0.00421683360445182!GO:0022890;inorganic cation transmembrane transporter activity;0.0042397167411928!GO:0006355;regulation of transcription, DNA-dependent;0.00427875121666692!GO:0003714;transcription corepressor activity;0.00437052665193366!GO:0030521;androgen receptor signaling pathway;0.00439221559485953!GO:0007052;mitotic spindle organization and biogenesis;0.00439489609101121!GO:0032259;methylation;0.00439489609101121!GO:0031252;leading edge;0.0044253052377035!GO:0031968;organelle outer membrane;0.00442548102326292!GO:0030518;steroid hormone receptor signaling pathway;0.00443179772020193!GO:0031982;vesicle;0.00453789986964222!GO:0000287;magnesium ion binding;0.00456443705679052!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00458284509194792!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00464745042708106!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00464745042708106!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00468467895470582!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00478138253198632!GO:0001772;immunological synapse;0.00482222191704992!GO:0005741;mitochondrial outer membrane;0.0048361768413829!GO:0000228;nuclear chromosome;0.00494887572951269!GO:0051223;regulation of protein transport;0.00512128619957847!GO:0043596;nuclear replication fork;0.00546733296127687!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00579128431003169!GO:0043488;regulation of mRNA stability;0.00591271643284654!GO:0043487;regulation of RNA stability;0.00591271643284654!GO:0019901;protein kinase binding;0.0059711892067955!GO:0009124;nucleoside monophosphate biosynthetic process;0.0062591243638624!GO:0009123;nucleoside monophosphate metabolic process;0.0062591243638624!GO:0000922;spindle pole;0.00639107768581253!GO:0031124;mRNA 3'-end processing;0.00639107768581253!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00641933608828165!GO:0004003;ATP-dependent DNA helicase activity;0.00656743198145181!GO:0051090;regulation of transcription factor activity;0.00658530990828106!GO:0006497;protein amino acid lipidation;0.00671726885822734!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0069855721254606!GO:0016859;cis-trans isomerase activity;0.00700470257358368!GO:0006284;base-excision repair;0.00703073788313748!GO:0045936;negative regulation of phosphate metabolic process;0.00704478959753451!GO:0009889;regulation of biosynthetic process;0.00704478959753451!GO:0005774;vacuolar membrane;0.0071293057815303!GO:0042101;T cell receptor complex;0.0071986958770458!GO:0007264;small GTPase mediated signal transduction;0.00728451497039188!GO:0046966;thyroid hormone receptor binding;0.00728716696173527!GO:0016605;PML body;0.00729121733768537!GO:0007265;Ras protein signal transduction;0.00748977359511792!GO:0006268;DNA unwinding during replication;0.00748977359511792!GO:0006506;GPI anchor biosynthetic process;0.00759351031567425!GO:0030663;COPI coated vesicle membrane;0.00760487794735669!GO:0030126;COPI vesicle coat;0.00760487794735669!GO:0006338;chromatin remodeling;0.00762367579682149!GO:0051789;response to protein stimulus;0.00766213950192823!GO:0006986;response to unfolded protein;0.00766213950192823!GO:0030137;COPI-coated vesicle;0.00791154591026403!GO:0019900;kinase binding;0.00795974607105689!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00805204057563553!GO:0000049;tRNA binding;0.00848561270175216!GO:0016272;prefoldin complex;0.00861198188550103!GO:0006505;GPI anchor metabolic process;0.00885913450552712!GO:0032200;telomere organization and biogenesis;0.00893478983148178!GO:0000723;telomere maintenance;0.00893478983148178!GO:0043414;biopolymer methylation;0.00893509760213531!GO:0048471;perinuclear region of cytoplasm;0.00893509760213531!GO:0003746;translation elongation factor activity;0.00920422114442301!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00923593341942691!GO:0004177;aminopeptidase activity;0.00931455058671077!GO:0051251;positive regulation of lymphocyte activation;0.00939039547906112!GO:0008139;nuclear localization sequence binding;0.00947164355418829!GO:0019783;small conjugating protein-specific protease activity;0.00948725980385605!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00949640672531398!GO:0019210;kinase inhibitor activity;0.00955582420839074!GO:0016788;hydrolase activity, acting on ester bonds;0.00961127202742082!GO:0006950;response to stress;0.0096560509341125!GO:0016584;nucleosome positioning;0.00970368367715113!GO:0016301;kinase activity;0.0100995502643312!GO:0045454;cell redox homeostasis;0.010175558512509!GO:0042770;DNA damage response, signal transduction;0.0102962140727594!GO:0031123;RNA 3'-end processing;0.0105121225331858!GO:0004532;exoribonuclease activity;0.0105661719499648!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0105661719499648!GO:0031902;late endosome membrane;0.0107294026191949!GO:0004843;ubiquitin-specific protease activity;0.0107480376006941!GO:0030522;intracellular receptor-mediated signaling pathway;0.0107495748195058!GO:0051336;regulation of hydrolase activity;0.0109571226709998!GO:0046467;membrane lipid biosynthetic process;0.0112056241004592!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0114009228008569!GO:0031625;ubiquitin protein ligase binding;0.0115895634356613!GO:0009161;ribonucleoside monophosphate metabolic process;0.0116418155647696!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0116418155647696!GO:0031410;cytoplasmic vesicle;0.0119934462284504!GO:0044438;microbody part;0.0121158390995406!GO:0044439;peroxisomal part;0.0121158390995406!GO:0016197;endosome transport;0.0122262738485136!GO:0030127;COPII vesicle coat;0.0126739690525897!GO:0012507;ER to Golgi transport vesicle membrane;0.0126739690525897!GO:0004860;protein kinase inhibitor activity;0.0127111530843672!GO:0048487;beta-tubulin binding;0.0127199046192947!GO:0005869;dynactin complex;0.0127669926542207!GO:0009112;nucleobase metabolic process;0.0128106076623717!GO:0031988;membrane-bound vesicle;0.0134297429545456!GO:0006091;generation of precursor metabolites and energy;0.0134835043228886!GO:0016790;thiolester hydrolase activity;0.0135594938856988!GO:0000339;RNA cap binding;0.0135835401005073!GO:0008408;3'-5' exonuclease activity;0.0137033089415108!GO:0009116;nucleoside metabolic process;0.0138007971115136!GO:0005765;lysosomal membrane;0.0138451334984597!GO:0044437;vacuolar part;0.0140321415167082!GO:0042393;histone binding;0.0140321415167082!GO:0006376;mRNA splice site selection;0.0145808670104054!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0145808670104054!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0146520416747211!GO:0005669;transcription factor TFIID complex;0.0146591532694857!GO:0005070;SH3/SH2 adaptor activity;0.0146677619178179!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0148524447329638!GO:0004221;ubiquitin thiolesterase activity;0.0148986750509435!GO:0042326;negative regulation of phosphorylation;0.0153660810019135!GO:0030695;GTPase regulator activity;0.0159674232850226!GO:0008637;apoptotic mitochondrial changes;0.0161341112045968!GO:0051235;maintenance of localization;0.0162793368545111!GO:0035258;steroid hormone receptor binding;0.0163880707241606!GO:0051539;4 iron, 4 sulfur cluster binding;0.0164115840307631!GO:0008017;microtubule binding;0.0164115840307631!GO:0043281;regulation of caspase activity;0.0166721253583121!GO:0005521;lamin binding;0.0168894817166663!GO:0031903;microbody membrane;0.0170070254999163!GO:0005778;peroxisomal membrane;0.0170070254999163!GO:0030134;ER to Golgi transport vesicle;0.0177023407041812!GO:0044454;nuclear chromosome part;0.0179390284804211!GO:0046649;lymphocyte activation;0.0181239783025658!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0182921157793811!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0185339572116353!GO:0015002;heme-copper terminal oxidase activity;0.0185339572116353!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0185339572116353!GO:0004129;cytochrome-c oxidase activity;0.0185339572116353!GO:0042158;lipoprotein biosynthetic process;0.0186462743289299!GO:0022406;membrane docking;0.0192472511587264!GO:0048278;vesicle docking;0.0192472511587264!GO:0015980;energy derivation by oxidation of organic compounds;0.0199507853189091!GO:0040029;regulation of gene expression, epigenetic;0.0201665466505458!GO:0043601;nuclear replisome;0.0204857495794595!GO:0030894;replisome;0.0204857495794595!GO:0032981;mitochondrial respiratory chain complex I assembly;0.020588180813065!GO:0010257;NADH dehydrogenase complex assembly;0.020588180813065!GO:0033108;mitochondrial respiratory chain complex assembly;0.020588180813065!GO:0006626;protein targeting to mitochondrion;0.0209329261627607!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0209762473870715!GO:0008047;enzyme activator activity;0.0210075837030536!GO:0006914;autophagy;0.0210075837030536!GO:0006919;caspase activation;0.0210075837030536!GO:0004197;cysteine-type endopeptidase activity;0.0210862560415442!GO:0016311;dephosphorylation;0.0212127356259191!GO:0043621;protein self-association;0.0212349562120015!GO:0030258;lipid modification;0.0212349562120015!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0212349562120015!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0212349562120015!GO:0051540;metal cluster binding;0.021454991995672!GO:0051536;iron-sulfur cluster binding;0.021454991995672!GO:0019079;viral genome replication;0.022026363759568!GO:0006144;purine base metabolic process;0.02220794094302!GO:0051059;NF-kappaB binding;0.0222655358123071!GO:0000738;DNA catabolic process, exonucleolytic;0.0226365438501801!GO:0006904;vesicle docking during exocytosis;0.0226432005897632!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0227842737518937!GO:0030880;RNA polymerase complex;0.0229823806017453!GO:0030119;AP-type membrane coat adaptor complex;0.0230340672157544!GO:0030125;clathrin vesicle coat;0.0232344002556321!GO:0030665;clathrin coated vesicle membrane;0.0232344002556321!GO:0006378;mRNA polyadenylation;0.0233357356428894!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0233357356428894!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0233357356428894!GO:0009126;purine nucleoside monophosphate metabolic process;0.0233357356428894!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0233357356428894!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0233618408818081!GO:0000059;protein import into nucleus, docking;0.0234089807236732!GO:0016408;C-acyltransferase activity;0.0234299668814592!GO:0045792;negative regulation of cell size;0.0235471443332937!GO:0000018;regulation of DNA recombination;0.0235471443332937!GO:0043022;ribosome binding;0.0237647086805977!GO:0000781;chromosome, telomeric region;0.0237647086805977!GO:0022411;cellular component disassembly;0.0240996177362571!GO:0051881;regulation of mitochondrial membrane potential;0.0241790738989893!GO:0008180;signalosome;0.0247080000938394!GO:0030131;clathrin adaptor complex;0.0250186898110802!GO:0030176;integral to endoplasmic reticulum membrane;0.0250186898110802!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0255498344168224!GO:0042608;T cell receptor binding;0.0266603271596176!GO:0016023;cytoplasmic membrane-bound vesicle;0.0266603271596176!GO:0050852;T cell receptor signaling pathway;0.026684727699563!GO:0007259;JAK-STAT cascade;0.026687314292509!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0268827482648702!GO:0030867;rough endoplasmic reticulum membrane;0.0269089435254294!GO:0046426;negative regulation of JAK-STAT cascade;0.026934464318674!GO:0000726;non-recombinational repair;0.0273281369650036!GO:0006007;glucose catabolic process;0.0274890395180543!GO:0044450;microtubule organizing center part;0.0274890395180543!GO:0000792;heterochromatin;0.0276813145968239!GO:0017134;fibroblast growth factor binding;0.0276813145968239!GO:0006839;mitochondrial transport;0.0276813145968239!GO:0005876;spindle microtubule;0.0279495037549391!GO:0008320;protein transmembrane transporter activity;0.0279842516788383!GO:0051098;regulation of binding;0.0280414628672997!GO:0008629;induction of apoptosis by intracellular signals;0.0280960542740226!GO:0004576;oligosaccharyl transferase activity;0.0281154504372063!GO:0004659;prenyltransferase activity;0.0284968272778836!GO:0046483;heterocycle metabolic process;0.029055097673075!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.029065202812914!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.029065202812914!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.029065202812914!GO:0030308;negative regulation of cell growth;0.0291251554984907!GO:0050870;positive regulation of T cell activation;0.0292786493907203!GO:0008097;5S rRNA binding;0.0297510291916713!GO:0003725;double-stranded RNA binding;0.0298106522885372!GO:0000178;exosome (RNase complex);0.0301118834538716!GO:0051338;regulation of transferase activity;0.0309902957953902!GO:0006595;polyamine metabolic process;0.0311101118733456!GO:0033116;ER-Golgi intermediate compartment membrane;0.0318906877130767!GO:0008250;oligosaccharyl transferase complex;0.0320745883761504!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0320781859563055!GO:0051452;cellular pH reduction;0.0322259107407992!GO:0051453;regulation of cellular pH;0.0322259107407992!GO:0045851;pH reduction;0.0322259107407992!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0324305828718705!GO:0050865;regulation of cell activation;0.0327452845832851!GO:0005832;chaperonin-containing T-complex;0.0329179754515831!GO:0051249;regulation of lymphocyte activation;0.0332700625416923!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0337828708286198!GO:0050681;androgen receptor binding;0.033839950614296!GO:0000096;sulfur amino acid metabolic process;0.0339124933561985!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0343143215179426!GO:0050811;GABA receptor binding;0.0343816897762393!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.034852500135804!GO:0005874;microtubule;0.035058800452645!GO:0006406;mRNA export from nucleus;0.0351880504705755!GO:0043549;regulation of kinase activity;0.0352891641118405!GO:0033673;negative regulation of kinase activity;0.0359658703228187!GO:0006469;negative regulation of protein kinase activity;0.0359658703228187!GO:0007034;vacuolar transport;0.0363585161486157!GO:0022884;macromolecule transmembrane transporter activity;0.0363585161486157!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0363585161486157!GO:0006984;ER-nuclear signaling pathway;0.0379865151599476!GO:0000152;nuclear ubiquitin ligase complex;0.0380201087131836!GO:0045045;secretory pathway;0.0380956504795514!GO:0002378;immunoglobulin biosynthetic process;0.0380956504795514!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0380956504795514!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0380956504795514!GO:0048524;positive regulation of viral reproduction;0.0381368461100053!GO:0005083;small GTPase regulator activity;0.0381701764387641!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0381767534129431!GO:0000428;DNA-directed RNA polymerase complex;0.0381767534129431!GO:0005784;translocon complex;0.0381767534129431!GO:0031570;DNA integrity checkpoint;0.0385440348680674!GO:0032940;secretion by cell;0.0385790776442224!GO:0030833;regulation of actin filament polymerization;0.0386969108954205!GO:0016407;acetyltransferase activity;0.039545625771571!GO:0031577;spindle checkpoint;0.03990419824501!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0399438645717498!GO:0006266;DNA ligation;0.0399651035831695!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0402894237892993!GO:0000819;sister chromatid segregation;0.040755594262099!GO:0030132;clathrin coat of coated pit;0.0407704028873064!GO:0007004;telomere maintenance via telomerase;0.0411632107545371!GO:0005095;GTPase inhibitor activity;0.0411632107545371!GO:0006518;peptide metabolic process;0.0423190874543689!GO:0030332;cyclin binding;0.0425171369106581!GO:0007021;tubulin folding;0.0425275238630434!GO:0006275;regulation of DNA replication;0.0426315080469052!GO:0009966;regulation of signal transduction;0.0430897003586997!GO:0019976;interleukin-2 binding;0.0432570491737287!GO:0004911;interleukin-2 receptor activity;0.0432570491737287!GO:0003887;DNA-directed DNA polymerase activity;0.0439425092780387!GO:0008276;protein methyltransferase activity;0.044417736265134!GO:0007030;Golgi organization and biogenesis;0.0452664998654208!GO:0001784;phosphotyrosine binding;0.0452664998654208!GO:0000725;recombinational repair;0.0457186058854299!GO:0000724;double-strand break repair via homologous recombination;0.0457186058854299!GO:0051348;negative regulation of transferase activity;0.0458128769650021!GO:0016791;phosphoric monoester hydrolase activity;0.0460660887957286!GO:0019058;viral infectious cycle;0.0466596503317782!GO:0004540;ribonuclease activity;0.0468052532503188!GO:0043280;positive regulation of caspase activity;0.0468052532503188!GO:0000070;mitotic sister chromatid segregation;0.0469665166098365!GO:0016126;sterol biosynthetic process;0.0479067446981733!GO:0000175;3'-5'-exoribonuclease activity;0.0481028716781875!GO:0000123;histone acetyltransferase complex;0.0482052220220845!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0482052220220845!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0482052220220845!GO:0045892;negative regulation of transcription, DNA-dependent;0.0482052220220845!GO:0008625;induction of apoptosis via death domain receptors;0.0498221280043852!GO:0051219;phosphoprotein binding;0.0499595997623018!GO:0016860;intramolecular oxidoreductase activity;0.0499595997623018!GO:0045185;maintenance of protein localization;0.0499595997623018
 |sample_id=11791
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=ELF1,2,4:2.16904163239;CDX1,2,4:2.03813442807;PAX4:2.03280284161;RUNX1..3:1.98072468986;TLX2:1.97476478885;PAX3,7:1.79170561604;POU1F1:1.68705780402;DMAP1_NCOR{1,2}_SMARC:1.56880716403;STAT1,3:1.53916052255;ETS1,2:1.5271135445;ZBTB16:1.4562979619;RORA:1.39002817202;PDX1:1.28887687692;FOXO1,3,4:1.17302552005;SPI1:1.17266528694;GATA6:1.07715329877;SPIB:1.05709602366;TGIF1:1.05573888884;NKX2-2,8:1.04316023669;IRF1,2:1.01963218088;ELK1,4_GABP{A,B1}:1.01897566618;E2F1..5:0.991575779191;CRX:0.939281026207;PBX1:0.921672266287;IKZF2:0.915960331827;YY1:0.906173063204;LEF1_TCF7_TCF7L1,2:0.894173131223;FOX{D1,D2}:0.819702264937;BREu{core}:0.798546429408;FOX{F1,F2,J1}:0.793481248745;NKX6-1,2:0.702104748628;SPZ1:0.684442369215;NKX2-1,4:0.621034289981;POU2F1..3:0.586847709137;BPTF:0.569543894886;IRF7:0.555194431579;MYB:0.507861227812;NFY{A,B,C}:0.504509859554;HMX1:0.479938235126;FOXA2:0.445092531561;NANOG{mouse}:0.433949745725;ALX1:0.430128075127;PITX1..3:0.406055250938;SNAI1..3:0.37403083911;NKX3-1:0.350924248273;NR5A1,2:0.349829838259;CUX2:0.307638618792;ZEB1:0.256170573481;T:0.232695114058;NFKB1_REL_RELA:0.220322355792;FOXP1:0.218974500497;FOXN1:0.216309826826;OCT4_SOX2{dimer}:0.214274103493;ATF5_CREB3:0.210626221998;HOX{A6,A7,B6,B7}:0.199098875864;AHR_ARNT_ARNT2:0.18126519948;FOX{I1,J2}:0.135303001749;LMO2:0.131472549787;NRF1:0.119489874003;SOX5:0.110758254906;MYOD1:0.100500635227;PAX2:0.0467248452602;NR3C1:0.0318301034629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0297442460989;PAX8:0.0266852566807;STAT5{A,B}:0.0107671374844;STAT2,4,6:0.00275698832647;SREBF1,2:0.00260447845361;GFI1:-0.0113094194289;RFX2..5_RFXANK_RFXAP:-0.0122891873258;VSX1,2:-0.0127943683896;NFIL3:-0.0288129817696;POU3F1..4:-0.0472694458425;ZNF143:-0.0521883087814;EP300:-0.0545793005613;HNF4A_NR2F1,2:-0.0662752338615;SMAD1..7,9:-0.0683812749299;HES1:-0.0712785629817;RREB1:-0.0745526781452;NFATC1..3:-0.103868390203;HBP1_HMGB_SSRP1_UBTF:-0.103924727803;PPARG:-0.119957299273;CREB1:-0.132932637365;GLI1..3:-0.154024349303;PAX6:-0.158128985068;EVI1:-0.163835119618;TOPORS:-0.170117827891;ATF2:-0.176601178057;JUN:-0.187522756217;FOXM1:-0.194500536788;AIRE:-0.206740050931;ATF6:-0.207964718049;TAL1_TCF{3,4,12}:-0.210123987987;AR:-0.225946589039;HNF1A:-0.238453075916;FOXQ1:-0.243961727518;HAND1,2:-0.250144345623;ARID5B:-0.258573873917;GCM1,2:-0.284753141376;PRRX1,2:-0.284998945492;NKX2-3_NKX2-5:-0.294821546722;RXRA_VDR{dimer}:-0.299524564718;HMGA1,2:-0.305581702467;DBP:-0.344910636576;MYFfamily:-0.371703018629;NFE2L1:-0.404998674287;ZNF148:-0.432230201269;SOX{8,9,10}:-0.432665488622;POU5F1:-0.444240391525;SOX2:-0.448349830356;ALX4:-0.459412716517;ATF4:-0.463642835823;NR1H4:-0.465247526444;NFIX:-0.480680016666;ZNF238:-0.486104426912;FOXP3:-0.486837961474;FOXD3:-0.506513511671;HOXA9_MEIS1:-0.507637364997;ZNF423:-0.543298300069;TP53:-0.571797654468;CEBPA,B_DDIT3:-0.586849214118;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.588916230749;FOSL2:-0.592881875387;NANOG:-0.594355189418;ZNF384:-0.601008074453;ESR1:-0.627514516537;TFAP4:-0.634449654061;PAX5:-0.634634851205;LHX3,4:-0.640463950817;TFDP1:-0.649788994458;BACH2:-0.650081115669;FOS_FOS{B,L1}_JUN{B,D}:-0.65797309943;RFX1:-0.660608336399;ZBTB6:-0.706583407371;REST:-0.707549515317;NHLH1,2:-0.710613945329;HLF:-0.751254731374;SRF:-0.754323031892;SOX17:-0.754388247116;NFE2:-0.776316621188;TFCP2:-0.781890882116;UFEwm:-0.803864241959;MED-1{core}:-0.808412939181;MZF1:-0.809326352118;MEF2{A,B,C,D}:-0.820331753955;RBPJ:-0.858204865535;ADNP_IRX_SIX_ZHX:-0.866157295719;KLF4:-0.926042527418;PRDM1:-0.938164263098;MYBL2:-0.942634028641;EBF1:-0.954766504398;NFE2L2:-0.959102968075;HOX{A5,B5}:-0.967676734532;bHLH_family:-0.98017352076;HIF1A:-1.03771849776;POU6F1:-1.08202292734;ZFP161:-1.10738240725;TBX4,5:-1.16403483455;GTF2I:-1.2105167058;MTE{core}:-1.21491699018;EGR1..3:-1.22871298808;GFI1B:-1.23497652365;ONECUT1,2:-1.24082316265;GATA4:-1.28050162622;MAZ:-1.30026319942;MAFB:-1.30356459142;ESRRA:-1.31482603352;GZF1:-1.33098443802;RXR{A,B,G}:-1.3356879846;MTF1:-1.35394800625;NR6A1:-1.36117446074;CDC5L:-1.37051554997;PAX1,9:-1.41657939511;XBP1:-1.43728726446;HSF1,2:-1.43887631689;ZIC1..3:-1.4541506938;PATZ1:-1.46039961442;XCPE1{core}:-1.50397040336;TEAD1:-1.51315844781;NKX3-2:-1.51503105438;HIC1:-1.53500331095;GTF2A1,2:-1.55568319483;HOX{A4,D4}:-1.56944032271;EN1,2:-1.5753328712;TFAP2B:-1.6507401777;TBP:-1.69048956668;TEF:-1.81110019943;TFAP2{A,C}:-1.83250953282;TLX1..3_NFIC{dimer}:-1.85775200375;IKZF1:-1.94368184902;FOXL1:-2.10241527742;SP1:-2.11600198285
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11791-124B9;search_select_hide=table117:FF:11791-124B9
 }}

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FF:11791-124B9: Difference between revisions

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Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0