FF:14323-155E3: Difference between revisions

Latest revision as of 19:06, 4 June 2020

Name:	Fibroblast - skin normal, donor1 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	CNhs12403
Sample type:	fractionations and perturbations
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	25 year old
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005302

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12403		CAGE		DRX008037		DRR008909

Accession ID Hg19

Library id		BAM		CTSS
CNhs12403		DRZ000334		DRZ001719

Accession ID Hg38

Library id		BAM		CTSS
CNhs12403		DRZ011684		DRZ013069

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0176
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.872
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.156
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.949
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.521
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.16
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0908
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.448
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0996
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.18
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.453
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0996
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.14
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.77
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0415
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0791
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0784
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0996
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.13
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.127
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.18
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.486
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.359
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.02
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.308
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.77
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.001
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12403

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.105
MA0003.1	MA0003.1	0.991
MA0004.1	MA0004.1	0.0217
MA0006.1	MA0006.1	0.465
MA0007.1	MA0007.1	0.537
MA0009.1	MA0009.1	0.22
MA0014.1	MA0014.1	0.182
MA0017.1	MA0017.1	0.0497
MA0018.2	MA0018.2	0.195
MA0019.1	MA0019.1	0.783
MA0024.1	MA0024.1	0.00152
MA0025.1	MA0025.1	0.0974
MA0027.1	MA0027.1	0.815
MA0028.1	MA0028.1	0.413
MA0029.1	MA0029.1	0.722
MA0030.1	MA0030.1	0.159
MA0031.1	MA0031.1	0.17
MA0035.2	MA0035.2	5.23208e-4
MA0038.1	MA0038.1	0.43
MA0039.2	MA0039.2	0.321
MA0040.1	MA0040.1	0.198
MA0041.1	MA0041.1	0.731
MA0042.1	MA0042.1	0.667
MA0043.1	MA0043.1	0.117
MA0046.1	MA0046.1	0.316
MA0047.2	MA0047.2	0.968
MA0048.1	MA0048.1	0.00634
MA0050.1	MA0050.1	0.577
MA0051.1	MA0051.1	0.145
MA0052.1	MA0052.1	0.108
MA0055.1	MA0055.1	0.303
MA0057.1	MA0057.1	0.676
MA0058.1	MA0058.1	0.00281
MA0059.1	MA0059.1	0.0444
MA0060.1	MA0060.1	2.07666e-4
MA0061.1	MA0061.1	0.0118
MA0062.2	MA0062.2	0.506
MA0065.2	MA0065.2	0.00174
MA0066.1	MA0066.1	0.451
MA0067.1	MA0067.1	0.645
MA0068.1	MA0068.1	0.248
MA0069.1	MA0069.1	0.0413
MA0070.1	MA0070.1	0.65
MA0071.1	MA0071.1	0.154
MA0072.1	MA0072.1	0.438
MA0073.1	MA0073.1	0.72
MA0074.1	MA0074.1	0.612
MA0076.1	MA0076.1	0.0984
MA0077.1	MA0077.1	0.0759
MA0078.1	MA0078.1	0.655
MA0079.2	MA0079.2	0.318
MA0080.2	MA0080.2	1.52063e-7
MA0081.1	MA0081.1	0.0289
MA0083.1	MA0083.1	3.29492e-5
MA0084.1	MA0084.1	0.289
MA0087.1	MA0087.1	0.691
MA0088.1	MA0088.1	0.829
MA0090.1	MA0090.1	2.18488e-5
MA0091.1	MA0091.1	0.824
MA0092.1	MA0092.1	0.869
MA0093.1	MA0093.1	0.0243
MA0099.2	MA0099.2	0.319
MA0100.1	MA0100.1	0.597
MA0101.1	MA0101.1	0.00171
MA0102.2	MA0102.2	0.519
MA0103.1	MA0103.1	7.27761e-6
MA0104.2	MA0104.2	9.43344e-5
MA0105.1	MA0105.1	0.0647
MA0106.1	MA0106.1	0.132
MA0107.1	MA0107.1	0.00158
MA0108.2	MA0108.2	0.0885
MA0111.1	MA0111.1	0.0953
MA0112.2	MA0112.2	0.563
MA0113.1	MA0113.1	0.819
MA0114.1	MA0114.1	0.0171
MA0115.1	MA0115.1	0.189
MA0116.1	MA0116.1	0.874
MA0117.1	MA0117.1	0.365
MA0119.1	MA0119.1	0.901
MA0122.1	MA0122.1	0.474
MA0124.1	MA0124.1	0.0517
MA0125.1	MA0125.1	0.153
MA0131.1	MA0131.1	0.993
MA0135.1	MA0135.1	0.875
MA0136.1	MA0136.1	1.05811e-5
MA0137.2	MA0137.2	0.785
MA0138.2	MA0138.2	0.753
MA0139.1	MA0139.1	0.492
MA0140.1	MA0140.1	0.00497
MA0141.1	MA0141.1	0.0297
MA0142.1	MA0142.1	0.0208
MA0143.1	MA0143.1	0.658
MA0144.1	MA0144.1	0.881
MA0145.1	MA0145.1	0.413
MA0146.1	MA0146.1	0.926
MA0147.1	MA0147.1	0.00395
MA0148.1	MA0148.1	0.347
MA0149.1	MA0149.1	0.0953
MA0150.1	MA0150.1	0.18
MA0152.1	MA0152.1	0.0743
MA0153.1	MA0153.1	0.805
MA0154.1	MA0154.1	0.936
MA0155.1	MA0155.1	0.947
MA0156.1	MA0156.1	0.0431
MA0157.1	MA0157.1	0.206
MA0159.1	MA0159.1	0.436
MA0160.1	MA0160.1	0.00573
MA0162.1	MA0162.1	0.096
MA0163.1	MA0163.1	0.533
MA0164.1	MA0164.1	0.496
MA0258.1	MA0258.1	0.503
MA0259.1	MA0259.1	0.336

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12403

Novel motif	Logo	P-value
1	1	0.082
10	10	0.446
100	100	0.376
101	101	0.778
102	102	0.0295
103	103	0.167
104	104	0.385
105	105	0.731
106	106	0.0379
107	107	0.753
108	108	0.868
109	109	0.0982
11	11	0.191
110	110	0.854
111	111	0.0895
112	112	0.667
113	113	0.0153
114	114	0.685
115	115	0.861
116	116	0.88
117	117	0.511
118	118	0.687
119	119	0.546
12	12	0.869
120	120	0.498
121	121	0.803
122	122	0.0479
123	123	0.00901
124	124	0.0943
125	125	0.706
126	126	0.179
127	127	0.763
128	128	0.131
129	129	0.328
13	13	0.412
130	130	0.664
131	131	0.687
132	132	0.627
133	133	0.616
134	134	0.828
135	135	0.538
136	136	0.177
137	137	0.45
138	138	0.391
139	139	0.351
14	14	0.46
140	140	0.923
141	141	0.538
142	142	0.931
143	143	0.316
144	144	0.992
145	145	0.92
146	146	0.187
147	147	0.0783
148	148	0.0606
149	149	0.118
15	15	0.0233
150	150	0.617
151	151	0.237
152	152	0.535
153	153	0.615
154	154	0.523
155	155	0.00826
156	156	0.505
157	157	0.99
158	158	0.248
159	159	0.232
16	16	0.91
160	160	0.364
161	161	0.353
162	162	0.562
163	163	0.81
164	164	0.459
165	165	0.514
166	166	0.0292
167	167	0.226
168	168	0.893
169	169	0.281
17	17	0.799
18	18	0.624
19	19	0.182
2	2	0.7
20	20	0.559
21	21	0.158
22	22	0.895
23	23	0.587
24	24	0.171
25	25	0.109
26	26	0.818
27	27	0.398
28	28	0.672
29	29	0.863
3	3	0.673
30	30	0.502
31	31	0.671
32	32	3.08185e-7
33	33	0.402
34	34	0.782
35	35	0.637
36	36	0.0347
37	37	0.64
38	38	0.362
39	39	0.486
4	4	0.231
40	40	0.0246
41	41	0.453
42	42	0.268
43	43	0.443
44	44	0.157
45	45	0.463
46	46	0.493
47	47	0.134
48	48	0.413
49	49	0.0529
5	5	0.807
50	50	0.525
51	51	0.448
52	52	0.762
53	53	0.358
54	54	0.557
55	55	0.409
56	56	0.297
57	57	0.448
58	58	0.137
59	59	0.925
6	6	0.612
60	60	0.199
61	61	0.171
62	62	0.144
63	63	0.665
64	64	0.121
65	65	0.651
66	66	0.225
67	67	0.902
68	68	0.562
69	69	0.351
7	7	0.0955
70	70	0.359
71	71	0.398
72	72	0.36
73	73	0.315
74	74	0.38
75	75	0.353
76	76	0.896
77	77	0.53
78	78	0.0292
79	79	0.00724
8	8	0.0954
80	80	0.836
81	81	0.412
82	82	0.798
83	83	0.0436
84	84	0.124
85	85	0.433
86	86	0.606
87	87	0.393
88	88	0.645
89	89	0.845
9	9	0.838
90	90	0.159
91	91	0.996
92	92	0.711
93	93	0.642
94	94	0.716
95	95	0.343
96	96	0.944
97	97	0.521
98	98	0.0593
99	99	0.156

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12403

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000668 human Fibroblast - skin normal, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000406 (nuclear fraction sample)
0000668 (human Fibroblast - skin normal, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0003102
+|DRA_sample_Accession=CAGE@SAMD00005302
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002620
+|accession_numbers=CAGE;DRX008037;DRR008909;DRZ000334;DRZ001719;DRZ011684;DRZ013069
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000406,FF:0000668
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.46!286.75!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.06!113.10!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.92!82.96!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.89!76.00!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.74!145.05!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.44!26.79!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.83!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.39!418.92!FOSB;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.10!TCF12;;chr20:50179368..50179392,-!p2@NFATC2!1.36!28.34!NFATC2;;chr6:10415276..10415341,-!p2@TFAP2A!1.35!26.02!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.87!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!1.32!430.52!AEBP1;;chr5:321810..321877,+!p1@AHRR!1.25!52.56!AHRR;;chr7:27224795..27224840,-!p2@HOXA11!1.25!16.75!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.48!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.93!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.46!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.81!NFATC4;;chr8:60031619..60031676,-!p1@TOX!1.21!32.98!TOX;;chr5:72744594..72744609,-!p1@FOXD1!1.19!65.18!FOXD1;;chr7:44143978..44143989,+!p2@AEBP1!1.19!26.28!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.17!13.91!HOXC8;;chr15:37392616..37392638,-!p2@MEIS2!1.16!42.00!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr6:19837592..19837621,+!p1@ID4!1.14!78.58!ID4;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.37!HOXA11;;chr3:147111198..147111225,+!p4@ZIC1!1.12!12.11!ZIC1;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.62!MEIS2;;chr14:75745523..75745537,+!p1@FOS!1.09!1339.47!FOS;;chr3:157823517..157823562,-!p1@SHOX2!1.09!12.11!SHOX2;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.66!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.85!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.82!RUNX1T1;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.82!HOXD3;;chr21:36260773..36260804,-!p7@RUNX1!1.04!13.40!RUNX1;;chr4:174451370..174451387,-!p1@HAND2!1.04!10.05!HAND2;;chr6:85474299..85474324,-!p1@TBX18!1.02!17.00!TBX18;;chr10:114710244..114710257,+!p3@TCF7L2!1.01!25.25!TCF7L2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.62!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!1.01!9.28!ZIC1;;chr9:132427972..132428056,+!p1@PRRX2!1.00!11.85!PRRX2;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.02!ZFY;;chr2:239756671..239756732,+!p1@TWIST2!0.99!28.86!TWIST2;;chr8:67525443..67525459,-!p2@MYBL1!0.99!13.14!MYBL1;;chrX:106960180..106960197,-!p2@TSC22D3!0.98!33.24!TSC22D3;;chr8:60031682..60031710,-!p2@TOX!0.98!14.17!TOX;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.42!MEIS2;;chr7:44143997..44144008,+!p3@AEBP1!0.97!10.82!AEBP1;;chr1:119530493..119530572,-!p1@TBX15!0.97!8.24!TBX15;;chr2:66662281..66662308,+!p1@MEIS1!0.96!28.60!MEIS1;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.99!EMX2;;chr12:53614115..53614154,-!p1@RARG!0.94!42.77!RARG;;chr1:197886665..197886732,+!p3@LHX9!0.94!7.73!LHX9;;chr8:93115445..93115462,-!p7@RUNX1T1!0.94!7.73!RUNX1T1;;chr10:63809013..63809041,+!p3@ARID5B!0.93!43.80!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.31!ARID5B;;chr15:37392703..37392717,-!p8@MEIS2!0.92!10.56!MEIS2;;chr7:1577111..1577132,+!p4@MAFK!0.92!8.24!MAFK;;chr19:16435625..16435682,+!p1@KLF2!0.91!239.35!KLF2;;chr4:81118647..81118666,+!p1@PRDM8!0.91!9.53!PRDM8;;chr10:28032421..28032494,-!p2@MKX!0.91!7.21!MKX;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.21!NPAS1;;chr1:197886421..197886432,+!p2@LHX9!0.91!7.21!LHX9;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.83!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.90!17.52!ZNF281;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!9.02!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!0.90!6.96!DLX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.88!80.13!PLAGL1;;chr7:1577076..1577095,+!p5@MAFK!0.87!6.44!MAFK;;chr3:147127142..147127168,+!p1@ZIC1!0.87!6.44!ZIC1;;chr10:28035133..28035148,-!p3@MKX!0.87!6.44!MKX;;chr12:54393880..54393962,+!p1@HOXC9!0.87!6.44!HOXC9;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.89!HIF1A;;chr15:37390850..37390909,-!p3@MEIS2!0.86!12.88!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.85!7.47!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.54!ZNF521;;chr4:95128841..95128865,+!p4@SMARCAD1!0.84!12.62!SMARCAD1;;chr5:158527104..158527135,-!p4@EBF1!0.84!5.93!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.93!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.93!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.82!77.03!NR4A1;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.50!SATB2;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.67!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.67!HOXA9;;chr10:63661437..63661465,+!p2@ARID5B!0.81!112.33!ARID5B;;chr7:99156011..99156036,+!p7@ZNF655!0.81!6.44!ZNF655;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.41!HOXD8;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.41!PRRX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!14.94!GLI3;;chr6:10412600..10412637,-!p1@TFAP2A!0.80!9.28!TFAP2A;;chr12:80085061..80085119,-!p6@PAWR!0.80!8.76!PAWR;;chr1:170633262..170633285,+!p3@PRRX1!0.79!5.93!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.79!5.15!DLX1;;chr5:158527139..158527161,-!p5@EBF1!0.79!5.15!EBF1;;chr10:63809077..63809089,+!p5@ARID5B!0.78!11.59!ARID5B;;chr5:137801160..137801176,+!p1@EGR1!0.77!532.29!EGR1;;chr11:44331576..44331650,-!p1@ALX4!0.77!4.90!ALX4;;chr19:13135582..13135600,+!p3@NFIX!0.77!4.90!NFIX;;chr19:13134772..13134822,+!p2@NFIX!0.76!7.21!NFIX;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.76!5.15!GLIS1;;chr12:124873357..124873401,-!p1@NCOR2!0.75!59.51!NCOR2;;chr1:59249688..59249703,-!p3@JUN!0.75!30.92!JUN;;chr7:150945754..150945789,-!p2@SMARCD3!0.75!15.46!SMARCD3;;chr12:54410948..54410992,+!p3@HOXC5!0.75!4.64!HOXC5;;chr16:31076332..31076388,-!p3@ZNF668!0.75!4.64!ZNF668;;chr4:174450089..174450153,-!p2@HAND2!0.75!4.64!HAND2;;chr3:114343768..114343822,-!p1@ZBTB20!0.74!21.90!ZBTB20;;chrX:106960221..106960236,-!p3@TSC22D3!0.74!13.40!TSC22D3;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.67!TBX18;;chr2:121493492..121493537,+!p2@GLI2!0.73!7.73!GLI2;;chr15:37390482..37390572,-!p7@MEIS2!0.73!6.18!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!0.73!5.41!MEIS2;;chr3:157824001..157824078,-!p2@SHOX2!0.73!4.38!SHOX2;;chr7:27213893..27213954,-!p1@HOXA10!0.73!4.38!HOXA10;;chr1:23885981..23886002,-!p1@ID3!0.72!835.27!ID3;;chr3:37217736..37217753,-!p2@LRRFIP2!0.72!19.58!LRRFIP2;;chr18:53068911..53068935,-!p4@TCF4!0.72!4.90!TCF4;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.22!HIF1A;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.34!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!0.71!7.47!TWIST2;;chr5:72744445..72744466,-!p2@FOXD1!0.71!7.21!FOXD1;;chr16:67881588..67881612,-!p2@CENPT!0.71!5.93!CENPT;;chr19:45972701..45972774,+!p2@FOSB!0.71!5.93!FOSB;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.67!EBF1;;chr11:12696071..12696086,+!p3@TEAD1!0.71!5.67!TEAD1;;chr15:83953397..83953425,-!p1@BNC1!0.71!4.90!BNC1;;chr5:3595977..3595999,+!p1@IRX1!0.71!4.12!IRX1;;chr10:28035112..28035130,-!p5@MKX!0.71!4.12!MKX;;chr12:53625846..53625861,-!p6@RARG!0.71!4.12!RARG;;chr2:172967242..172967265,-!p2@DLX2!0.71!4.12!DLX2;;chr3:25470156..25470227,+!p2@RARB!0.71!4.12!RARB;;chr4:111558135..111558198,-!p2@PITX2!0.71!4.12!PITX2;;chr2:157198916..157198978,-!p2@NR4A2!0.70!15.72!NR4A2;;chr3:71630980..71631110,-!p3@FOXP1!0.70!15.46!FOXP1;;chr7:86782094..86782108,+!p5@DMTF1!0.70!6.96!DMTF1;;chrX:128657457..128657475,-!p1@SMARCA1!0.69!51.79!SMARCA1;;chr2:208394817..208394834,+!p3@CREB1!0.69!17.78!CREB1;;chr2:121493425..121493474,+!p1@GLI2!0.69!9.28!GLI2;;chr15:96874927..96874938,+!p8@NR2F2!0.69!9.02!NR2F2;;chr15:80843484..80843499,+!p5@ARNT2!0.69!3.86!ARNT2;;chr3:147127177..147127194,+!p2@ZIC1!0.69!3.86!ZIC1;;chr5:2751785..2751808,-!p2@IRX2!0.69!3.86!IRX2;;chr6:100912785..100912822,-!p1@SIM1!0.69!3.86!SIM1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.69!3.86!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.69!3.86!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.86!PRRX1;;chr11:46316699..46316719,+!p10@CREB3L1!0.69!3.86!CREB3L1;;chr12:54378923..54378966,+!p1@HOXC10!0.69!3.86!HOXC10;;chr11:706938..707008,-!p3@DEAF1!0.68!4.90!DEAF1;;chr9:2015335..2015370,+!p1@SMARCA2!0.67!52.04!SMARCA2;;chr17:79881332..79881348,-!p3@MAFG!0.67!5.67!MAFG;;chr17:40897043..40897087,-!p1@EZH1!0.66!36.84!EZH1;;chr2:66662249..66662267,+!p2@MEIS1!0.66!15.46!MEIS1;;chr4:121843844..121843904,-!p1@PRDM5!0.66!9.28!PRDM5;;chr19:31840130..31840160,-!p2@TSHZ3!0.66!5.93!TSHZ3;;chr16:54964740..54964789,+!p1@IRX5!0.66!5.41!IRX5;;chr2:177001268..177001287,+!p3@HOXD3!0.66!3.61!HOXD3;;chr3:147111505..147111529,+!p6@ZIC1!0.66!3.61!ZIC1;;chr8:93115508..93115552,-!p6@RUNX1T1!0.66!3.61!RUNX1T1;;chr10:28035155..28035166,-!p8@MKX!0.66!3.61!MKX;;chr19:9609272..9609297,-!p1@ZNF560!0.66!3.61!ZNF560;;chr1:170632439..170632465,+!p11@PRRX1!0.66!3.61!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.66!3.61!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.65!179.83!STAT2;;chr5:137804484..137804498,+!p2@EGR1!0.65!15.97!EGR1;;chr1:158979792..158979814,+!p2@IFI16!0.64!37.36!IFI16;;chr19:45908292..45908374,-!p1@PPP1R13L!0.64!35.04!PPP1R13L;;chr1:119530636..119530653,-!p2@TBX15!0.64!3.35!TBX15;;chr2:119604456..119604501,-!p2@EN1!0.64!3.35!EN1;;chr2:177001237..177001252,+!p5@HOXD3!0.64!3.35!HOXD3;;chr16:86612320..86612394,+!p1@FOXL1!0.64!3.35!FOXL1;;chr17:46132044..46132080,+!p4@NFE2L1!0.64!3.35!NFE2L1;;chr7:15726296..15726315,-!p1@MEOX2!0.64!3.35!MEOX2;;chr7:27205106..27205134,-!p2@HOXA9!0.64!3.35!HOXA9;;chr8:93115584..93115642,-!p5@RUNX1T1!0.64!3.35!RUNX1T1;;chr10:28034395..28034404,-!p9@MKX!0.64!3.35!MKX;;chr12:54380404..54380433,+!p3@HOXC10!0.64!3.35!HOXC10;;chr2:191878874..191878938,-!p1@STAT1!0.63!209.98!STAT1;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.40!RUNX1;;chrX:134478706..134478736,+!p1@ZNF449!0.63!12.37!ZNF449;;chr10:63809134..63809145,+!p6@ARID5B!0.63!8.50!ARID5B;;chr5:139487608..139487663,+!p3@PURA!0.63!7.73!PURA;;chr9:110252035..110252057,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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.ctss.bed.gz
 |id=FF:14323-155E3
-|is_a=EFO:0002091;;FF:0000210;;FF:0000668
+|is_a=EFO:0002091;;FF:0000668
+|is_obsolete=
+|library_id=CNhs12403
+|library_id_phase_based=2:CNhs12403
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14323
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14323
 |name=Fibroblast - skin normal, donor1 (nuclear fraction)
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12403,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=155
 |rna_catalog_number=custom
@@ Line 54: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=155E3
+|rna_tube_id=1.55E+05
 |rna_weight_ug=23.3496
 |sample_age=25 year old
+|sample_category=fractionations and perturbations
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 91: @@
 |sample_ethnicity=C
 |sample_experimental_condition=nuclear RNA
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.8309466224502e-224!GO:0043226;organelle;1.10631567062784e-175!GO:0043229;intracellular organelle;2.39000784129442e-175!GO:0043231;intracellular membrane-bound organelle;3.21390869288649e-170!GO:0043227;membrane-bound organelle;5.45429534730468e-170!GO:0005737;cytoplasm;2.73398608117942e-161!GO:0044422;organelle part;4.57278957460593e-111!GO:0044446;intracellular organelle part;1.25018494415518e-109!GO:0044444;cytoplasmic part;1.39085616746649e-106!GO:0044238;primary metabolic process;4.44907423696574e-88!GO:0043170;macromolecule metabolic process;2.14975204618745e-86!GO:0044237;cellular metabolic process;7.38809521120261e-85!GO:0005515;protein binding;7.71533212790018e-82!GO:0005634;nucleus;3.8698513950095e-77!GO:0032991;macromolecular complex;2.08307881304023e-73!GO:0044428;nuclear part;1.04875718706098e-65!GO:0043233;organelle lumen;1.99392782377062e-65!GO:0031974;membrane-enclosed lumen;1.99392782377062e-65!GO:0003723;RNA binding;1.34247512237921e-60!GO:0030529;ribonucleoprotein complex;1.4935870086021e-57!GO:0043283;biopolymer metabolic process;1.5245866543971e-50!GO:0016043;cellular component organization and biogenesis;1.46041887690467e-47!GO:0019538;protein metabolic process;1.44428324887639e-46!GO:0010467;gene expression;1.41084514235534e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.69712455475517e-44!GO:0033036;macromolecule localization;5.25698852567367e-44!GO:0006396;RNA processing;1.96160141288258e-43!GO:0015031;protein transport;2.32656985544263e-43!GO:0005739;mitochondrion;5.60880562095518e-43!GO:0031981;nuclear lumen;5.75351990727168e-43!GO:0008104;protein localization;3.12990112230876e-40!GO:0044260;cellular macromolecule metabolic process;3.5638247764626e-40!GO:0045184;establishment of protein localization;1.96061084543961e-39!GO:0044267;cellular protein metabolic process;2.06651715913678e-39!GO:0043234;protein complex;1.36138572796242e-38!GO:0031090;organelle membrane;2.05805649739372e-37!GO:0046907;intracellular transport;1.50043521370375e-36!GO:0016071;mRNA metabolic process;3.2343774462065e-36!GO:0006412;translation;1.40272705480959e-34!GO:0005829;cytosol;5.98631872995132e-32!GO:0008380;RNA splicing;3.93154472109101e-31!GO:0006397;mRNA processing;4.77096460446802e-31!GO:0006886;intracellular protein transport;1.51261307674087e-30!GO:0005840;ribosome;1.56829307173624e-29!GO:0000166;nucleotide binding;3.0743625218926e-29!GO:0044429;mitochondrial part;3.38312400308571e-29!GO:0006996;organelle organization and biogenesis;3.38312400308571e-29!GO:0031967;organelle envelope;9.48149198611074e-29!GO:0031975;envelope;1.59398539633782e-28!GO:0003676;nucleic acid binding;5.70139832669678e-28!GO:0005654;nucleoplasm;8.52510697896533e-28!GO:0009058;biosynthetic process;3.48763380431836e-27!GO:0044249;cellular biosynthetic process;1.608293093682e-26!GO:0009059;macromolecule biosynthetic process;1.79815075593162e-26!GO:0065003;macromolecular complex assembly;4.31926359868394e-26!GO:0016070;RNA metabolic process;6.59042370354948e-26!GO:0003735;structural constituent of ribosome;1.74694605770367e-24!GO:0022607;cellular component assembly;1.93164277350255e-24!GO:0043228;non-membrane-bound organelle;2.83538174109059e-24!GO:0043232;intracellular non-membrane-bound organelle;2.83538174109059e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.93992539116396e-23!GO:0033279;ribosomal subunit;1.35488076811944e-22!GO:0044451;nucleoplasm part;1.98164599342732e-22!GO:0051649;establishment of cellular localization;2.04586788368235e-22!GO:0051641;cellular localization;2.98254782615684e-22!GO:0005681;spliceosome;1.69110170089901e-21!GO:0006259;DNA metabolic process;2.98762567814735e-21!GO:0017076;purine nucleotide binding;1.42433854421783e-20!GO:0016462;pyrophosphatase activity;1.59014937693706e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.12667630840658e-20!GO:0017111;nucleoside-triphosphatase activity;2.80693700944092e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.89163294974548e-20!GO:0032553;ribonucleotide binding;3.90897529501987e-20!GO:0032555;purine ribonucleotide binding;3.90897529501987e-20!GO:0048770;pigment granule;4.80152466557909e-19!GO:0042470;melanosome;4.80152466557909e-19!GO:0016874;ligase activity;6.19342599321544e-19!GO:0005524;ATP binding;9.37671072238766e-19!GO:0030554;adenyl nucleotide binding;9.53935056345354e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.30470268537105e-18!GO:0032559;adenyl ribonucleotide binding;1.6458238897187e-18!GO:0005740;mitochondrial envelope;7.56847433173637e-18!GO:0008134;transcription factor binding;1.09369642277321e-17!GO:0031966;mitochondrial membrane;3.04591332566245e-17!GO:0048193;Golgi vesicle transport;9.87148551766945e-17!GO:0006457;protein folding;1.45251312894501e-16!GO:0006119;oxidative phosphorylation;1.97147393808725e-16!GO:0019866;organelle inner membrane;1.99560528691159e-16!GO:0006512;ubiquitin cycle;5.34825489609699e-16!GO:0005783;endoplasmic reticulum;1.18971554280479e-15!GO:0043285;biopolymer catabolic process;1.70486587461737e-15!GO:0012505;endomembrane system;1.99964722992438e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.32861762481542e-15!GO:0005743;mitochondrial inner membrane;2.91317119196591e-15!GO:0007049;cell cycle;3.39961576605438e-15!GO:0019941;modification-dependent protein catabolic process;4.9532257929853e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.9532257929853e-15!GO:0006511;ubiquitin-dependent protein catabolic process;5.08132000729927e-15!GO:0044265;cellular macromolecule catabolic process;5.12380460259731e-15!GO:0044257;cellular protein catabolic process;5.32435149817573e-15!GO:0005794;Golgi apparatus;1.21168753823372e-14!GO:0005730;nucleolus;1.80851526323465e-14!GO:0044445;cytosolic part;1.80851526323465e-14!GO:0031980;mitochondrial lumen;2.0972519563601e-14!GO:0005759;mitochondrial matrix;2.0972519563601e-14!GO:0008135;translation factor activity, nucleic acid binding;2.60771485912314e-14!GO:0016192;vesicle-mediated transport;2.61305781426512e-14!GO:0030163;protein catabolic process;2.74889942925959e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.82845309117743e-14!GO:0006605;protein targeting;2.85620412934887e-14!GO:0050794;regulation of cellular process;3.59887078068419e-14!GO:0009057;macromolecule catabolic process;3.74702055670284e-14!GO:0022618;protein-RNA complex assembly;7.91849123528883e-14!GO:0004386;helicase activity;1.50538445505091e-13!GO:0006974;response to DNA damage stimulus;9.86181964565988e-13!GO:0003712;transcription cofactor activity;1.27646668071121e-12!GO:0051186;cofactor metabolic process;1.39122550901985e-12!GO:0016887;ATPase activity;1.67700072697159e-12!GO:0043412;biopolymer modification;1.68632152194808e-12!GO:0044455;mitochondrial membrane part;2.22507701412597e-12!GO:0005793;ER-Golgi intermediate compartment;2.51467636018887e-12!GO:0044432;endoplasmic reticulum part;4.36268653607765e-12!GO:0051082;unfolded protein binding;4.74436828720705e-12!GO:0042623;ATPase activity, coupled;5.64321221526227e-12!GO:0044248;cellular catabolic process;5.70061286416609e-12!GO:0031965;nuclear membrane;8.01126090071954e-12!GO:0008026;ATP-dependent helicase activity;8.86963698462068e-12!GO:0015935;small ribosomal subunit;1.04991250687293e-11!GO:0015934;large ribosomal subunit;1.08621877405527e-11!GO:0016604;nuclear body;1.78312284512634e-11!GO:0005635;nuclear envelope;1.78312284512634e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.91089900958002e-11!GO:0000375;RNA splicing, via transesterification reactions;1.91089900958002e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.91089900958002e-11!GO:0022402;cell cycle process;2.13740101338031e-11!GO:0006913;nucleocytoplasmic transport;4.83937937030827e-11!GO:0006464;protein modification process;5.50423877319526e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.50756508534206e-11!GO:0051169;nuclear transport;8.84217344311321e-11!GO:0005746;mitochondrial respiratory chain;8.90591170049071e-11!GO:0048523;negative regulation of cellular process;9.86631868450661e-11!GO:0003743;translation initiation factor activity;1.07747682191022e-10!GO:0044453;nuclear membrane part;2.13673393080206e-10!GO:0006461;protein complex assembly;2.50225517264365e-10!GO:0006281;DNA repair;2.59727483641421e-10!GO:0043687;post-translational protein modification;2.74988154070656e-10!GO:0016607;nuclear speck;4.11479951856979e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.6511167852017e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.6511167852017e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.6511167852017e-10!GO:0050789;regulation of biological process;4.98726202287407e-10!GO:0006732;coenzyme metabolic process;5.70551859087579e-10!GO:0008565;protein transporter activity;6.71482769729611e-10!GO:0050136;NADH dehydrogenase (quinone) activity;7.79286130727539e-10!GO:0003954;NADH dehydrogenase activity;7.79286130727539e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.79286130727539e-10!GO:0043038;amino acid activation;9.01457510810565e-10!GO:0006418;tRNA aminoacylation for protein translation;9.01457510810565e-10!GO:0043039;tRNA aminoacylation;9.01457510810565e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.01457510810565e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.03057342025774e-09!GO:0042254;ribosome biogenesis and assembly;1.31018634604487e-09!GO:0006366;transcription from RNA polymerase II promoter;1.32668105569286e-09!GO:0008639;small protein conjugating enzyme activity;1.33012455009091e-09!GO:0006399;tRNA metabolic process;1.41409851851194e-09!GO:0004842;ubiquitin-protein ligase activity;1.67805792694393e-09!GO:0000278;mitotic cell cycle;1.83586421568259e-09!GO:0030120;vesicle coat;2.61019714476017e-09!GO:0030662;coated vesicle membrane;2.61019714476017e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.24869583804559e-09!GO:0006446;regulation of translational initiation;3.41332431302553e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.31034249217437e-09!GO:0009719;response to endogenous stimulus;5.22373653040588e-09!GO:0006413;translational initiation;5.65259217417466e-09!GO:0019222;regulation of metabolic process;5.80826148947961e-09!GO:0051276;chromosome organization and biogenesis;6.19402493471672e-09!GO:0019787;small conjugating protein ligase activity;6.27339573435178e-09!GO:0048519;negative regulation of biological process;9.36620553366177e-09!GO:0048475;coated membrane;9.71958963633984e-09!GO:0030117;membrane coat;9.71958963633984e-09!GO:0005643;nuclear pore;1.00611635283224e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.17748936284961e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.17748936284961e-08!GO:0042773;ATP synthesis coupled electron transport;1.17748936284961e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.44478041797741e-08!GO:0045271;respiratory chain complex I;1.44478041797741e-08!GO:0005747;mitochondrial respiratory chain complex I;1.44478041797741e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.69400072452956e-08!GO:0009259;ribonucleotide metabolic process;1.93606212093759e-08!GO:0012501;programmed cell death;3.33187272365127e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.48144832165499e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.10259418288397e-08!GO:0006323;DNA packaging;4.58367938067208e-08!GO:0009055;electron carrier activity;4.84166349054968e-08!GO:0045333;cellular respiration;4.99141132437893e-08!GO:0006163;purine nucleotide metabolic process;5.16831787532403e-08!GO:0009060;aerobic respiration;5.21482841195293e-08!GO:0006403;RNA localization;5.23515515528156e-08!GO:0009150;purine ribonucleotide metabolic process;5.52532707530635e-08!GO:0051726;regulation of cell cycle;5.70084732814269e-08!GO:0009056;catabolic process;5.94351376922021e-08!GO:0050657;nucleic acid transport;5.94932727934848e-08!GO:0051236;establishment of RNA localization;5.94932727934848e-08!GO:0050658;RNA transport;5.94932727934848e-08!GO:0006915;apoptosis;6.79320861355125e-08!GO:0000074;regulation of progression through cell cycle;6.79742586283612e-08!GO:0016881;acid-amino acid ligase activity;7.63125467082799e-08!GO:0017038;protein import;8.51640730446979e-08!GO:0016568;chromatin modification;9.56558853976768e-08!GO:0008219;cell death;9.7645105664588e-08!GO:0016265;death;9.7645105664588e-08!GO:0016564;transcription repressor activity;1.01343170186512e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.05066105865298e-07!GO:0043566;structure-specific DNA binding;1.24795564635953e-07!GO:0006164;purine nucleotide biosynthetic process;1.35653425956968e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.38852308582165e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.39565645932223e-07!GO:0005789;endoplasmic reticulum membrane;1.58307931834416e-07!GO:0009260;ribonucleotide biosynthetic process;1.68110313178806e-07!GO:0005768;endosome;1.84726827806856e-07!GO:0031324;negative regulation of cellular metabolic process;1.92270428268701e-07!GO:0046930;pore complex;2.11197980709721e-07!GO:0016787;hydrolase activity;2.41512878552604e-07!GO:0005788;endoplasmic reticulum lumen;2.78916733432048e-07!GO:0003714;transcription corepressor activity;3.38362255895649e-07!GO:0005798;Golgi-associated vesicle;3.61296955055796e-07!GO:0015986;ATP synthesis coupled proton transport;3.75342934770735e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.75342934770735e-07!GO:0006099;tricarboxylic acid cycle;3.75710489505615e-07!GO:0046356;acetyl-CoA catabolic process;3.75710489505615e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.80163734521273e-07!GO:0015630;microtubule cytoskeleton;3.88394387776994e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.38156676932685e-07!GO:0051187;cofactor catabolic process;4.92732026601952e-07!GO:0006260;DNA replication;5.68166504393083e-07!GO:0009109;coenzyme catabolic process;5.71799970861411e-07!GO:0005667;transcription factor complex;6.35319813558104e-07!GO:0065002;intracellular protein transport across a membrane;6.69405509041543e-07!GO:0005761;mitochondrial ribosome;7.04061077898091e-07!GO:0000313;organellar ribosome;7.04061077898091e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.34555152440641e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.34555152440641e-07!GO:0009141;nucleoside triphosphate metabolic process;7.55952667089831e-07!GO:0003724;RNA helicase activity;1.10201590503002e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.20657064918574e-06!GO:0046034;ATP metabolic process;1.2401952009812e-06!GO:0031323;regulation of cellular metabolic process;1.40842866160913e-06!GO:0051028;mRNA transport;1.49825220092776e-06!GO:0006084;acetyl-CoA metabolic process;1.62618817620012e-06!GO:0009892;negative regulation of metabolic process;1.68555644422296e-06!GO:0000087;M phase of mitotic cell cycle;1.72446153416169e-06!GO:0051188;cofactor biosynthetic process;1.72446153416169e-06!GO:0000151;ubiquitin ligase complex;1.7819400147988e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.8404646261319e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8404646261319e-06!GO:0003697;single-stranded DNA binding;1.8404646261319e-06!GO:0065007;biological regulation;1.99346862066922e-06!GO:0007067;mitosis;2.17898476539043e-06!GO:0051246;regulation of protein metabolic process;2.26584540305091e-06!GO:0051170;nuclear import;2.3970893070865e-06!GO:0019829;cation-transporting ATPase activity;2.82373782711555e-06!GO:0003924;GTPase activity;3.21291807953041e-06!GO:0006606;protein import into nucleus;3.23878199472945e-06!GO:0019899;enzyme binding;3.4486647233269e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.59691495642405e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.59691495642405e-06!GO:0006350;transcription;3.70874476635914e-06!GO:0005694;chromosome;3.8485302361703e-06!GO:0007010;cytoskeleton organization and biogenesis;3.9299259521608e-06!GO:0022403;cell cycle phase;4.39468583123547e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.630079777996e-06!GO:0003713;transcription coactivator activity;4.65012906396379e-06!GO:0006754;ATP biosynthetic process;5.12737739194546e-06!GO:0006753;nucleoside phosphate metabolic process;5.12737739194546e-06!GO:0005813;centrosome;5.21468392173662e-06!GO:0051789;response to protein stimulus;5.57527371688668e-06!GO:0006986;response to unfolded protein;5.57527371688668e-06!GO:0031988;membrane-bound vesicle;6.0075928285287e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.22680807390639e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.24260945070498e-06!GO:0030029;actin filament-based process;6.43006004643903e-06!GO:0031252;leading edge;6.9810939938819e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.17194689130469e-06!GO:0044440;endosomal part;7.1969870158017e-06!GO:0010008;endosome membrane;7.1969870158017e-06!GO:0044431;Golgi apparatus part;7.25289701088238e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.72024204959939e-06!GO:0016563;transcription activator activity;8.00908587392074e-06!GO:0045786;negative regulation of progression through cell cycle;8.4014255651624e-06!GO:0016481;negative regulation of transcription;8.43939031082572e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.51460160725673e-06!GO:0006364;rRNA processing;8.69518590111256e-06!GO:0032446;protein modification by small protein conjugation;9.56103414457275e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.06908048536915e-05!GO:0005815;microtubule organizing center;1.15397617964346e-05!GO:0009117;nucleotide metabolic process;1.34152595891934e-05!GO:0006793;phosphorus metabolic process;1.3624978624659e-05!GO:0006796;phosphate metabolic process;1.3624978624659e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.38079968789946e-05!GO:0051301;cell division;1.54616722683082e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.54616722683082e-05!GO:0016310;phosphorylation;1.57709448258869e-05!GO:0016072;rRNA metabolic process;1.58710363768405e-05!GO:0016567;protein ubiquitination;1.74666248684728e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.76148264423883e-05!GO:0008092;cytoskeletal protein binding;1.81152968643488e-05!GO:0010468;regulation of gene expression;1.82347243059694e-05!GO:0006752;group transfer coenzyme metabolic process;1.9433496903267e-05!GO:0043069;negative regulation of programmed cell death;2.18459199588757e-05!GO:0043067;regulation of programmed cell death;2.27350038140051e-05!GO:0031982;vesicle;2.30378498570565e-05!GO:0031410;cytoplasmic vesicle;2.61997821130867e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.79688124179384e-05!GO:0043623;cellular protein complex assembly;2.87163464301698e-05!GO:0042981;regulation of apoptosis;3.11352060776511e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.19717688731324e-05!GO:0004298;threonine endopeptidase activity;3.27410522148022e-05!GO:0015078;hydrogen ion transmembrane transporter activity;3.27773741054616e-05!GO:0006613;cotranslational protein targeting to membrane;3.31181297582194e-05!GO:0009108;coenzyme biosynthetic process;3.48718418889184e-05!GO:0008361;regulation of cell size;3.76681152525207e-05!GO:0016740;transferase activity;4.15260882102287e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.20407001730272e-05!GO:0006916;anti-apoptosis;4.61459993482627e-05!GO:0016049;cell growth;4.73360954761843e-05!GO:0043066;negative regulation of apoptosis;4.85703751098996e-05!GO:0016491;oxidoreductase activity;5.07704595365011e-05!GO:0016363;nuclear matrix;5.45513591597051e-05!GO:0045259;proton-transporting ATP synthase complex;5.53661630517986e-05!GO:0005773;vacuole;5.56765352751396e-05!GO:0005770;late endosome;5.75983065770574e-05!GO:0030532;small nuclear ribonucleoprotein complex;5.94192420724336e-05!GO:0016853;isomerase activity;6.01134570648349e-05!GO:0008186;RNA-dependent ATPase activity;7.17343842221714e-05!GO:0003690;double-stranded DNA binding;7.63481188119233e-05!GO:0000245;spliceosome assembly;7.67875095448475e-05!GO:0030133;transport vesicle;7.88440776201077e-05!GO:0030663;COPI coated vesicle membrane;8.09408047759331e-05!GO:0030126;COPI vesicle coat;8.09408047759331e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.05002344163996e-05!GO:0030867;rough endoplasmic reticulum membrane;0.000101354498543443!GO:0048471;perinuclear region of cytoplasm;0.000106763283146359!GO:0006891;intra-Golgi vesicle-mediated transport;0.00011857719533942!GO:0032774;RNA biosynthetic process;0.000122899452947021!GO:0033116;ER-Golgi intermediate compartment membrane;0.000130551817083396!GO:0006351;transcription, DNA-dependent;0.00014443541248765!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147913233506202!GO:0044427;chromosomal part;0.00015487617059648!GO:0016197;endosome transport;0.000166930660840671!GO:0016859;cis-trans isomerase activity;0.000195858101605771!GO:0051168;nuclear export;0.000196736669321835!GO:0005905;coated pit;0.000201324842545008!GO:0000279;M phase;0.00021582370691994!GO:0004004;ATP-dependent RNA helicase activity;0.000228680106331129!GO:0030137;COPI-coated vesicle;0.000229676251265252!GO:0008047;enzyme activator activity;0.000255052958462575!GO:0005769;early endosome;0.000275698057174111!GO:0065004;protein-DNA complex assembly;0.000279295549341102!GO:0044262;cellular carbohydrate metabolic process;0.000291976317160044!GO:0001558;regulation of cell growth;0.000298504091404955!GO:0006333;chromatin assembly or disassembly;0.000307124345829951!GO:0003729;mRNA binding;0.000336487324854053!GO:0000139;Golgi membrane;0.000349795434767535!GO:0045449;regulation of transcription;0.000361325237101668!GO:0016779;nucleotidyltransferase activity;0.000367136849380759!GO:0006612;protein targeting to membrane;0.000369662707958924!GO:0051427;hormone receptor binding;0.000395855568295221!GO:0006091;generation of precursor metabolites and energy;0.00039953195567381!GO:0005791;rough endoplasmic reticulum;0.000411629297948644!GO:0007243;protein kinase cascade;0.000417550173841268!GO:0008270;zinc ion binding;0.000425012429513427!GO:0046914;transition metal ion binding;0.000441733598799394!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000445496815207827!GO:0000323;lytic vacuole;0.000463823755192159!GO:0005764;lysosome;0.000463823755192159!GO:0006414;translational elongation;0.000480831199787543!GO:0030134;ER to Golgi transport vesicle;0.000516234273508639!GO:0031968;organelle outer membrane;0.000518613877442232!GO:0005048;signal sequence binding;0.000528393386655998!GO:0004576;oligosaccharyl transferase activity;0.000540898984430905!GO:0030658;transport vesicle membrane;0.000549481624997009!GO:0008250;oligosaccharyl transferase complex;0.000561296201968765!GO:0004177;aminopeptidase activity;0.000571478759220696!GO:0005885;Arp2/3 protein complex;0.000623333236527282!GO:0019867;outer membrane;0.00062948931284422!GO:0007005;mitochondrion organization and biogenesis;0.000645636237468983!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000668984499279846!GO:0019843;rRNA binding;0.000743417555931889!GO:0035257;nuclear hormone receptor binding;0.000747525223195837!GO:0005819;spindle;0.000791664929147792!GO:0030127;COPII vesicle coat;0.000828058382631654!GO:0012507;ER to Golgi transport vesicle membrane;0.000828058382631654!GO:0005525;GTP binding;0.000828058382631654!GO:0045454;cell redox homeostasis;0.000836362889156928!GO:0000059;protein import into nucleus, docking;0.000888394606137382!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000890696036910013!GO:0000785;chromatin;0.000977935997563105!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00108232294381459!GO:0043021;ribonucleoprotein binding;0.00109488663125759!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00112725026370972!GO:0043284;biopolymer biosynthetic process;0.00113865656134113!GO:0050662;coenzyme binding;0.00114361678662783!GO:0051920;peroxiredoxin activity;0.00119646364346217!GO:0003678;DNA helicase activity;0.0013067288595101!GO:0004674;protein serine/threonine kinase activity;0.00134720068334103!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00159444330313311!GO:0048522;positive regulation of cellular process;0.00162654713162528!GO:0045892;negative regulation of transcription, DNA-dependent;0.00163652905980044!GO:0008022;protein C-terminus binding;0.00165733528177!GO:0030118;clathrin coat;0.00166357808485515!GO:0008654;phospholipid biosynthetic process;0.00167055702872751!GO:0006892;post-Golgi vesicle-mediated transport;0.00169599735081002!GO:0005096;GTPase activator activity;0.00176177445243449!GO:0044420;extracellular matrix part;0.00180804568421129!GO:0006402;mRNA catabolic process;0.00180939105069448!GO:0051329;interphase of mitotic cell cycle;0.00189879052403472!GO:0030660;Golgi-associated vesicle membrane;0.00190369737921132!GO:0006355;regulation of transcription, DNA-dependent;0.00191325326139356!GO:0003684;damaged DNA binding;0.00202147163876171!GO:0005581;collagen;0.00204394820061446!GO:0006289;nucleotide-excision repair;0.00208276619217908!GO:0007050;cell cycle arrest;0.00236830800614573!GO:0030132;clathrin coat of coated pit;0.00238903822880739!GO:0051252;regulation of RNA metabolic process;0.00252190329788023!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00257236676925146!GO:0015399;primary active transmembrane transporter activity;0.00257236676925146!GO:0005741;mitochondrial outer membrane;0.00284896836110622!GO:0003746;translation elongation factor activity;0.00289927618571409!GO:0032561;guanyl ribonucleotide binding;0.00289927618571409!GO:0019001;guanyl nucleotide binding;0.00289927618571409!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00291317047510389!GO:0030521;androgen receptor signaling pathway;0.00293791850740405!GO:0006261;DNA-dependent DNA replication;0.0029746910119053!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00318133212452231!GO:0051325;interphase;0.00318202866055424!GO:0045045;secretory pathway;0.00321738064206939!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00325663911583476!GO:0019752;carboxylic acid metabolic process;0.00343933545683615!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00352922028696462!GO:0031124;mRNA 3'-end processing;0.00377976460008492!GO:0005874;microtubule;0.00381164275292882!GO:0048500;signal recognition particle;0.00383031616739221!GO:0007030;Golgi organization and biogenesis;0.00389872893140657!GO:0019798;procollagen-proline dioxygenase activity;0.00397031583625089!GO:0006082;organic acid metabolic process;0.0040307143503687!GO:0018196;peptidyl-asparagine modification;0.00407856741001311!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00407856741001311!GO:0031625;ubiquitin protein ligase binding;0.00441246944694573!GO:0042802;identical protein binding;0.00441246944694573!GO:0031543;peptidyl-proline dioxygenase activity;0.00460768927771501!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0046846422432893!GO:0000049;tRNA binding;0.00468829557525692!GO:0051287;NAD binding;0.00468829557525692!GO:0015631;tubulin binding;0.00470341794108502!GO:0001726;ruffle;0.00471487033225977!GO:0009165;nucleotide biosynthetic process;0.00471487033225977!GO:0065009;regulation of a molecular function;0.00485473750896673!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00490240725538788!GO:0003682;chromatin binding;0.00495888207119757!GO:0003779;actin binding;0.00495888207119757!GO:0005762;mitochondrial large ribosomal subunit;0.0050398195642576!GO:0000315;organellar large ribosomal subunit;0.0050398195642576!GO:0008139;nuclear localization sequence binding;0.00533794154894717!GO:0005583;fibrillar collagen;0.00550995731400178!GO:0017166;vinculin binding;0.00569445966499554!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00594614833647287!GO:0007264;small GTPase mediated signal transduction;0.00606025416942621!GO:0030027;lamellipodium;0.00683604186810947!GO:0048037;cofactor binding;0.00683722432243733!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00685877930036407!GO:0007265;Ras protein signal transduction;0.00705243199816789!GO:0003677;DNA binding;0.0071379580159399!GO:0046483;heterocycle metabolic process;0.00730818435713837!GO:0003711;transcription elongation regulator activity;0.00739614768143505!GO:0035258;steroid hormone receptor binding;0.00739614768143505!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00869619263955297!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00869619263955297!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00887651060107999!GO:0045047;protein targeting to ER;0.00887651060107999!GO:0005099;Ras GTPase activator activity;0.00901881815241668!GO:0006520;amino acid metabolic process;0.00901881815241668!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00901881815241668!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00901881815241668!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00901881815241668!GO:0031418;L-ascorbic acid binding;0.00951291325510212!GO:0045941;positive regulation of transcription;0.00975070929531458!GO:0045893;positive regulation of transcription, DNA-dependent;0.00981730768771233!GO:0005083;small GTPase regulator activity;0.00982622589456918!GO:0046489;phosphoinositide biosynthetic process;0.0102256621951853!GO:0006383;transcription from RNA polymerase III promoter;0.0104076646902466!GO:0051128;regulation of cellular component organization and biogenesis;0.0104874097369053!GO:0006354;RNA elongation;0.0109242577910007!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0109503638275864!GO:0050681;androgen receptor binding;0.0109539520550697!GO:0006401;RNA catabolic process;0.0110666784104727!GO:0040008;regulation of growth;0.0110728537975019!GO:0000118;histone deacetylase complex;0.0111114493476392!GO:0003756;protein disulfide isomerase activity;0.0111778228013602!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0111778228013602!GO:0044452;nucleolar part;0.011241938250451!GO:0031901;early endosome membrane;0.0117394919067024!GO:0005595;collagen type XII;0.0117639537541435!GO:0051052;regulation of DNA metabolic process;0.0119304196956814!GO:0006310;DNA recombination;0.0120003928456951!GO:0005869;dynactin complex;0.0120244989027576!GO:0004003;ATP-dependent DNA helicase activity;0.0120998868958955!GO:0031123;RNA 3'-end processing;0.0120998868958955!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0120998868958955!GO:0016044;membrane organization and biogenesis;0.0122497737034999!GO:0030518;steroid hormone receptor signaling pathway;0.0123574072413501!GO:0051539;4 iron, 4 sulfur cluster binding;0.012377218765007!GO:0006635;fatty acid beta-oxidation;0.0124473851053681!GO:0003702;RNA polymerase II transcription factor activity;0.0125022378421166!GO:0008312;7S RNA binding;0.0125320397005052!GO:0043492;ATPase activity, coupled to movement of substances;0.0125518548766324!GO:0030041;actin filament polymerization;0.0127927907712934!GO:0006405;RNA export from nucleus;0.0131829209060703!GO:0008180;signalosome;0.0134408480643385!GO:0045792;negative regulation of cell size;0.0137894158661835!GO:0008154;actin polymerization and/or depolymerization;0.0137985854764582!GO:0030032;lamellipodium biogenesis;0.0137985854764582!GO:0030119;AP-type membrane coat adaptor complex;0.0138913721999806!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0145459945150843!GO:0030131;clathrin adaptor complex;0.014675048697433!GO:0005832;chaperonin-containing T-complex;0.0148791373802766!GO:0030659;cytoplasmic vesicle membrane;0.0149376632920132!GO:0006352;transcription initiation;0.0149712934562177!GO:0006607;NLS-bearing substrate import into nucleus;0.0150379031258512!GO:0001527;microfibril;0.0156099809487658!GO:0030308;negative regulation of cell growth;0.0156958560200758!GO:0032200;telomere organization and biogenesis;0.01583031205112!GO:0000723;telomere maintenance;0.01583031205112!GO:0008094;DNA-dependent ATPase activity;0.0162747569704563!GO:0006302;double-strand break repair;0.0165137656852279!GO:0016251;general RNA polymerase II transcription factor activity;0.0167122630563047!GO:0003899;DNA-directed RNA polymerase activity;0.0167122630563047!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0168099312708865!GO:0007034;vacuolar transport;0.0171482671647318!GO:0031461;cullin-RING ubiquitin ligase complex;0.0171904457906535!GO:0008234;cysteine-type peptidase activity;0.0172165995385224!GO:0031902;late endosome membrane;0.017250007195174!GO:0048468;cell development;0.0172852884557495!GO:0016301;kinase activity;0.0178194339313411!GO:0006378;mRNA polyadenylation;0.0180033743146935!GO:0030125;clathrin vesicle coat;0.0181817930627111!GO:0030665;clathrin coated vesicle membrane;0.0181817930627111!GO:0005862;muscle thin filament tropomyosin;0.0184986448608231!GO:0005938;cell cortex;0.0185832721704269!GO:0015992;proton transport;0.0185832721704269!GO:0006818;hydrogen transport;0.0189401137464254!GO:0030695;GTPase regulator activity;0.0196947503952996!GO:0005591;collagen type VIII;0.0198421439198195!GO:0005598;short-chain collagen;0.0198421439198195!GO:0031072;heat shock protein binding;0.0199220466658926!GO:0043087;regulation of GTPase activity;0.0199220466658926!GO:0031529;ruffle organization and biogenesis;0.0201371723258652!GO:0007052;mitotic spindle organization and biogenesis;0.0205201332780336!GO:0005684;U2-dependent spliceosome;0.0205201332780336!GO:0007041;lysosomal transport;0.0206141096858609!GO:0007051;spindle organization and biogenesis;0.0206598394639817!GO:0043488;regulation of mRNA stability;0.0211908096457579!GO:0043487;regulation of RNA stability;0.0211908096457579!GO:0046474;glycerophospholipid biosynthetic process;0.0213758045153426!GO:0005856;cytoskeleton;0.0218694354907322!GO:0000339;RNA cap binding;0.0219487673529688!GO:0008033;tRNA processing;0.0220448708921871!GO:0000922;spindle pole;0.0220750304394995!GO:0006007;glucose catabolic process;0.0224035555565852!GO:0000075;cell cycle checkpoint;0.0225248646104575!GO:0006984;ER-nuclear signaling pathway;0.0227992725706906!GO:0044433;cytoplasmic vesicle part;0.0229842650378497!GO:0048487;beta-tubulin binding;0.0237826115582914!GO:0007160;cell-matrix adhesion;0.023926098196611!GO:0000781;chromosome, telomeric region;0.0243338007533926!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0246199116795097!GO:0009967;positive regulation of signal transduction;0.025159954825618!GO:0000096;sulfur amino acid metabolic process;0.0256543519333618!GO:0032940;secretion by cell;0.0260329851616589!GO:0031497;chromatin assembly;0.0261390996047017!GO:0030833;regulation of actin filament polymerization;0.0262920546643086!GO:0016408;C-acyltransferase activity;0.0263616152007975!GO:0043022;ribosome binding;0.0265891284312859!GO:0009112;nucleobase metabolic process;0.027388503218632!GO:0008652;amino acid biosynthetic process;0.0274357557193422!GO:0006334;nucleosome assembly;0.0277453235195699!GO:0043433;negative regulation of transcription factor activity;0.0279133557295033!GO:0035035;histone acetyltransferase binding;0.0281290148587428!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0281641749422603!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0281641749422603!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0281641749422603!GO:0033043;regulation of organelle organization and biogenesis;0.0281641749422603!GO:0012506;vesicle membrane;0.0289370540934801!GO:0031589;cell-substrate adhesion;0.0291448069026414!GO:0000209;protein polyubiquitination;0.029235664747624!GO:0045926;negative regulation of growth;0.029235664747624!GO:0007040;lysosome organization and biogenesis;0.0298700596570472!GO:0022408;negative regulation of cell-cell adhesion;0.0312640081020748!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0312640081020748!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0312640081020748!GO:0006740;NADPH regeneration;0.0313458694803718!GO:0006098;pentose-phosphate shunt;0.0313458694803718!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0328820545096333!GO:0033673;negative regulation of kinase activity;0.0338201028749662!GO:0006469;negative regulation of protein kinase activity;0.0338201028749662!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0347507842641981!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0347507842641981!GO:0051348;negative regulation of transferase activity;0.0348872544513389!GO:0051271;negative regulation of cell motility;0.0349531258562603!GO:0000314;organellar small ribosomal subunit;0.0349541460792414!GO:0005763;mitochondrial small ribosomal subunit;0.0349541460792414!GO:0043495;protein anchor;0.0350311253951437!GO:0007004;telomere maintenance via telomerase;0.0350460866871558!GO:0006497;protein amino acid lipidation;0.0350659404582452!GO:0005801;cis-Golgi network;0.0351847131011541!GO:0004527;exonuclease activity;0.0355053294403949!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0363484057437731!GO:0016569;covalent chromatin modification;0.0367667759185993!GO:0009225;nucleotide-sugar metabolic process;0.0369644761978744!GO:0000287;magnesium ion binding;0.0376160064907984!GO:0019318;hexose metabolic process;0.0377686026587254!GO:0006376;mRNA splice site selection;0.0378323820501117!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0378323820501117!GO:0005586;collagen type III;0.0378487037391913!GO:0004287;prolyl oligopeptidase activity;0.0379522364590711!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0379522364590711!GO:0008168;methyltransferase activity;0.0380662911154616!GO:0048518;positive regulation of biological process;0.0381141601434664!GO:0016741;transferase activity, transferring one-carbon groups;0.0382513778140891!GO:0001872;zymosan binding;0.0385980883022303!GO:0001878;response to yeast;0.0385980883022303!GO:0016579;protein deubiquitination;0.0388224121078758!GO:0005996;monosaccharide metabolic process;0.039106249982612!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0393391576656283!GO:0051087;chaperone binding;0.0393391576656283!GO:0005774;vacuolar membrane;0.0399994588810261!GO:0006611;protein export from nucleus;0.0400794449447097!GO:0042168;heme metabolic process;0.0400794449447097!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0404087324200803!GO:0030522;intracellular receptor-mediated signaling pathway;0.0407245692595672!GO:0001952;regulation of cell-matrix adhesion;0.0407245692595672!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0409044381558737!GO:0001666;response to hypoxia;0.0421015597911327!GO:0016570;histone modification;0.0427114408221797!GO:0005100;Rho GTPase activator activity;0.0428829376386284!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0430296203630202!GO:0051540;metal cluster binding;0.0437163683574116!GO:0051536;iron-sulfur cluster binding;0.0437163683574116!GO:0050790;regulation of catalytic activity;0.0438787352377525!GO:0006509;membrane protein ectodomain proteolysis;0.0445067538594589!GO:0033619;membrane protein proteolysis;0.0445067538594589!GO:0006778;porphyrin metabolic process;0.0446099518477979!GO:0033013;tetrapyrrole metabolic process;0.0446099518477979!GO:0000082;G1/S transition of mitotic cell cycle;0.0452950539890268!GO:0006338;chromatin remodeling;0.0474336275524319!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0476741523784867!GO:0006368;RNA elongation from RNA polymerase II promoter;0.048083646074912!GO:0007033;vacuole organization and biogenesis;0.0486956509456381!GO:0047485;protein N-terminus binding;0.0486956509456381!GO:0006379;mRNA cleavage;0.0487527772614905
 |sample_id=14323
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=skin
 |top_motifs=ALX4:2.26356298456;NKX3-1:2.21007183549;HIF1A:2.11385417952;NR3C1:2.08524813019;XBP1:1.78914129541;EN1,2:1.73421006159;SRF:1.73061653973;GZF1:1.68905069395;ESR1:1.65681213173;RXRA_VDR{dimer}:1.64686137249;NKX3-2:1.58118801103;TEAD1:1.57990303629;FOXL1:1.51538294664;HBP1_HMGB_SSRP1_UBTF:1.46596241031;ZNF238:1.44512642455;UFEwm:1.43164407323;GATA4:1.42354236806;PRDM1:1.39175439524;HMGA1,2:1.35244756761;HMX1:1.34921360841;MYBL2:1.34554130182;KLF4:1.32933089054;GTF2A1,2:1.30455208687;HSF1,2:1.29353908286;RXR{A,B,G}:1.27607028207;SOX17:1.24973650547;MZF1:1.21258628505;AHR_ARNT_ARNT2:1.13843627357;EBF1:1.07958316697;HOX{A5,B5}:1.06877827186;MAFB:1.03099689116;GFI1B:1.01322719212;ATF6:0.991610458142;MTE{core}:0.99150673975;AIRE:0.978265208792;EVI1:0.975437492384;TOPORS:0.972186287259;NANOG{mouse}:0.967892898817;TP53:0.951846857062;GLI1..3:0.9463881537;GTF2I:0.944420205745;EP300:0.941014812529;MAZ:0.939821449803;TEF:0.938382198837;TAL1_TCF{3,4,12}:0.882659664458;PAX8:0.83964738975;HAND1,2:0.83233313818;SPZ1:0.828057993928;ZNF384:0.825767254333;NFATC1..3:0.785512196209;NKX2-1,4:0.756289222682;TLX1..3_NFIC{dimer}:0.75371235562;RREB1:0.697030157884;ZIC1..3:0.695839078403;NFIX:0.681230938528;NFE2L1:0.669642395213;HLF:0.663396644519;GFI1:0.644444691674;IKZF1:0.637586477164;GCM1,2:0.62928609779;STAT1,3:0.603922249166;ARID5B:0.594456765502;TFAP2{A,C}:0.571795366922;RFX1:0.549483119634;PPARG:0.535356327007;ELK1,4_GABP{A,B1}:0.534981630403;POU3F1..4:0.495291082007;TLX2:0.476703548684;NR1H4:0.470292184256;TBX4,5:0.452006788342;PATZ1:0.432485374914;MEF2{A,B,C,D}:0.413869222303;NFE2L2:0.408645180091;TFAP4:0.40343214868;SMAD1..7,9:0.402906929446;SP1:0.402426697154;ZNF148:0.399076886648;HES1:0.388321057636;PDX1:0.370154615053;FOXD3:0.368464348524;POU1F1:0.365103193051;TFCP2:0.325145999394;ZBTB6:0.320982714858;ATF4:0.301414631143;BPTF:0.285094427151;BACH2:0.283809006818;PRRX1,2:0.279377514198;FOXN1:0.278769580562;NFE2:0.235776529708;CEBPA,B_DDIT3:0.232185356457;NKX2-2,8:0.225958102667;ZNF143:0.220012562364;YY1:0.217703918821;MED-1{core}:0.208738754424;NRF1:0.188703337504;CREB1:0.182655663607;TFDP1:0.171454169469;FOXO1,3,4:0.168842066348;TBP:0.163126852772;HOX{A4,D4}:0.15615012001;XCPE1{core}:0.152290068876;CDC5L:0.146406391441;FOS_FOS{B,L1}_JUN{B,D}:0.141875041895;NR6A1:0.114228276032;PAX2:0.0964528090268;IRF1,2:0.0903120999186;PAX3,7:0.0882677120454;FOX{I1,J2}:0.0853251796542;MYFfamily:0.0577598323931;FOXP1:0.0549887378471;POU5F1:0.0547695530526;TFAP2B:0.0455424084342;ATF5_CREB3:0.0373250625667;EGR1..3:-0.0145263370342;NHLH1,2:-0.0168866048851;FOSL2:-0.0229011528817;ELF1,2,4:-0.0234574105545;HOX{A6,A7,B6,B7}:-0.0252392169528;ZFP161:-0.0269000790492;RUNX1..3:-0.0342404406179;MYB:-0.0442559287272;SOX5:-0.0556583686567;NKX2-3_NKX2-5:-0.065357343456;HIC1:-0.0662745555861;DMAP1_NCOR{1,2}_SMARC:-0.0743824111874;ZBTB16:-0.105497654958;PAX5:-0.106985185573;FOX{D1,D2}:-0.165088909806;ATF2:-0.170161349937;STAT5{A,B}:-0.171193690459;CRX:-0.172400373087;STAT2,4,6:-0.185084828527;RBPJ:-0.1871488568;SOX2:-0.191781294862;DBP:-0.202749547152;ZNF423:-0.214565884632;LEF1_TCF7_TCF7L1,2:-0.219635181035;FOXA2:-0.23344586566;CDX1,2,4:-0.236374171523;ONECUT1,2:-0.252857285017;HNF1A:-0.270863996401;SREBF1,2:-0.278670628326;T:-0.295642612075;SPI1:-0.309999730798;ETS1,2:-0.329812104847;AR:-0.368305844938;E2F1..5:-0.377085652942;bHLH_family:-0.384149446202;PAX4:-0.400804561161;HNF4A_NR2F1,2:-0.401143165021;TGIF1:-0.406514759534;NFKB1_REL_RELA:-0.416600838245;POU6F1:-0.422799555282;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.445065806144;JUN:-0.445721835941;RFX2..5_RFXANK_RFXAP:-0.455922960362;NFY{A,B,C}:-0.507575466765;ADNP_IRX_SIX_ZHX:-0.526759168976;MTF1:-0.534523742978;PAX1,9:-0.538071899797;PITX1..3:-0.542405441767;IRF7:-0.550645730106;REST:-0.561352200627;CUX2:-0.580127235103;LHX3,4:-0.595841564151;FOXM1:-0.61005716202;POU2F1..3:-0.616329034125;SPIB:-0.652895096305;PAX6:-0.734142724944;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.744456339465;ALX1:-0.791244864968;ZEB1:-0.850216085956;OCT4_SOX2{dimer}:-0.857425204394;HOXA9_MEIS1:-0.880087620114;SOX{8,9,10}:-0.912275295553;RORA:-0.921498382519;FOXP3:-0.931245785525;SNAI1..3:-0.93210696813;NFIL3:-0.955248535599;FOX{F1,F2,J1}:-0.9814995627;MYOD1:-0.992061106423;GATA6:-1.04602356;NANOG:-1.12349336653;IKZF2:-1.13428658984;NKX6-1,2:-1.1471971591;FOXQ1:-1.16361821229;ESRRA:-1.20368108501;LMO2:-1.20807526543;BREu{core}:-1.27933713864;NR5A1,2:-1.2808048738;PBX1:-1.56827192497;VSX1,2:-2.28761262566
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14323-155E3;search_select_hide=table117:FF:14323-155E3
 }}

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FF:14323-155E3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:06, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0