FF:11805-124D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005733 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |accession_numbers=CAGE;DRX008869;DRR009741;DRZ001166;DRZ002551;DRZ012516;DRZ013901 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0000107 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000350,FF:0011144 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:59799772..59799789,+!p1@Hand2!2.32!564.05!Hand2;;chr5:67490284..67490302,-!p1@Phox2b!2.13!135.31!Phox2b;;chr10:86956396..86956411,-!p1@Ascl1!2.11!194.93!Ascl1;;chr2:74583776..74583815,+!p3@Hoxd3!1.91!80.08!Hoxd3;;chr11:96164821..96164865,+!p1@Hoxb5!1.83!66.63!Hoxb5;;chr15:78994907..78994926,-!p1@Sox10!1.80!152.27!Sox10;;chr12:39510206..39510249,+!p3@Etv1!1.80!62.54!Etv1;;chr7:108966820..108966835,+!p1@Phox2a!1.80!62.25!Phox2a;;chr4:99322820..99322845,+!p1@Foxd3!1.79!76.57!Foxd3;;chr5:67490474..67490494,-!p2@Phox2b!1.62!40.33!Phox2b;;chr2:146047829..146047847,+!p1@Insm1!1.61!69.26!Insm1;;chr2:71384802..71384815,-!p1@Dlx2!1.58!45.30!Dlx2;;chr2:71367871..71367898,+!p1@Dlx1!1.57!35.95!Dlx1;;chr12:39510090..39510114,+!p6@Etv1!1.45!26.89!Etv1;;chr5:120120667..120120685,+!p3@Tbx3!1.41!47.05!Tbx3;;chr15:102865131..102865151,+!p2@Hoxc4!1.41!28.06!Hoxc4;;chr6:52154414..52154462,-!p1@Hoxa5!1.40!32.73!Hoxa5;;chr6:52154386..52154407,-!p2@Hoxa5!1.40!30.39!Hoxa5;;chr5:67490391..67490404,-!p3@Phox2b!1.40!23.96!Phox2b;;chr14:17407549..17407575,-!p3@Rarb!1.37!33.90!Rarb;;chr14:17407878..17407926,-!p1@Rarb!1.34!46.76!Rarb;;chr5:120121169..120121171,+!p4@Tbx3!1.34!36.82!Tbx3;;chr15:102865088..102865107,+!p1@Hoxc4!1.33!27.18!Hoxc4;;chr12:39510290..39510309,+!p5@Etv1!1.33!20.17!Etv1;;chr7:38557887..38557910,-!p5@Zfp536!1.32!19.87!Zfp536;;chr5:138199361..138199441,+!p2@Tsc22d4!1.30!35.66!Tsc22d4;;chr2:74565306..74565327,+!p2@Hoxd4!1.24!16.37!Hoxd4;;chr3:34548909..34548927,+!p1@Sox2!1.21!25.43!Sox2;;chr2:71367142..71367167,+!p2@Dlx1!1.21!15.20!Dlx1;;chr11:85646303..85646329,+!p1@Tbx2!1.20!97.03!Tbx2;;chr13:44936126..44936164,+!p6@Jarid2!1.17!16.07!Jarid2;;chr2:71384458..71384526,-!p2@Dlx2!1.17!13.74!Dlx2;;chr10:119913278..119913298,-!p2@Hmga2!1.15!29.23!Hmga2;;chr11:85646263..85646278,+!p2@Tbx2!1.14!32.73!Tbx2;;chr5:67490346..67490357,-!p4@Phox2b!1.11!11.98!Phox2b;;chr3:34548946..34548972,+!p2@Sox2!1.08!12.27!Sox2;;chr12:30213247..30213333,+!p1@Myt1l!1.08!11.11!Myt1l;;chr3:95032091..95032183,-!p1@Mllt11!1.07!92.65!Mllt11;;chr12:39507680..39507715,+!p2@Etv1!1.07!21.33!Etv1;;chr18:69752912..69752928,+!p9@Tcf4!1.06!15.78!Tcf4;;chr17:25707623..25707639,-!p1@Sox8!1.05!43.84!Sox8;;chr5:67490333..67490342,-!p5@Phox2b!1.05!10.23!Phox2b;;chr5:67490412..67490421,-!p6@Phox2b!1.05!10.23!Phox2b;;chr12:12948633..12948651,-!p1@Mycn!1.04!97.61!Mycn;;chr11:85646341..85646352,+!p3@Tbx2!1.04!19.87!Tbx2;;chr1:179374784..179374800,+!p2@Zfp238!1.04!11.69!Zfp238;;chr15:102865048..102865073,+!p3@Hoxc4!1.03!12.27!Hoxc4;;chr1:6724908..6724955,+!p2@St18!1.03!9.64!St18;;chr12:28027561..28027591,-!p1@Sox11!1.02!63.71!Sox11;;chr9:71743854..71743909,-!p1@Tcf12!1.01!74.23!Tcf12;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!1.01!24.84!Zfhx3;;chr13:40829137..40829205,-!p1@Tfap2a!1.01!10.52!Tfap2a;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!1.00!15.49!Hoxb2;;chr11:96180045..96180059,+!p1@Hoxb4!1.00!12.86!Hoxb4;;chr4:150503457..150503498,-!p3@Camta1!1.00!10.23!Camta1;;chr18:69752638..69752665,+!p19@Tcf4!1.00!9.94!Tcf4;;chr2:74583741..74583750,+!p10@Hoxd3!1.00!9.06!Hoxd3;;chr11:85646469..85646488,+!p5@Tbx2!0.99!13.15!Tbx2;;chr18:84255841..84255883,-!p1@Tshz1!0.96!59.33!Tshz1;;chr13:40826150..40826167,-!p3@Tfap2a!0.96!9.06!Tfap2a;;chr12:39510042..39510069,+!p8@Etv1!0.95!7.89!Etv1;;chrX:58146612..58146615,-!p1@Sox3!0.95!7.89!Sox3;;chr2:71384401..71384424,-!p3@Dlx2!0.95!7.89!Dlx2;;chr2:71384425..71384456,-!p4@Dlx2!0.93!7.60!Dlx2;;chr5:67490447..67490458,-!p7@Phox2b!0.93!7.60!Phox2b;;chr3:5218629..5218684,+!p1@Zfhx4!0.92!24.55!Zfhx4;;chr11:96164905..96164919,+!p2@Hoxb5!0.90!7.01!Hoxb5;;chr11:96160426..96160443,+!p2@Hoxb6!0.89!6.72!Hoxb6;;chr14:34791937..34791977,-!p1@Zfp488!0.89!6.72!Zfp488;;chr9:106356211..106356242,+!p1@Pcbp4!0.88!135.90!Pcbp4;;chr14:17407857..17407875,-!p4@Rarb!0.87!6.43!Rarb;;chr6:53523358..53523388,+!p1@Creb5!0.85!77.16!Creb5;;chr10:119913546..119913583,-!p3@Hmga2!0.84!12.86!Hmga2;;chr7:38554763..38554780,-!p1@Zfp536!0.83!10.81!Zfp536;;chr16:91270004..91270023,+!p1@Olig1!0.83!6.72!Olig1;;chr5:120121446..120121461,+!p2@Tbx3!0.82!19.58!Tbx3;;chr2:127347067..127347093,-!p1@Kcnip3!0.82!9.64!Kcnip3;;chr5:120121262..120121282,+!p6@Tbx3!0.82!6.43!Tbx3;;chr6:83020355..83020371,-!p1@Tlx2!0.82!5.55!Tlx2;;chr11:96180069..96180089,+!p3@Hoxb4!0.82!5.55!Hoxb4;;chr10:76424613..76424689,-!p1@Pcbp3!0.81!125.09!Pcbp3;;chr10:119914001..119914078,-!p4@Hmga2!0.81!7.60!Hmga2;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.80!7.31!Hoxb2;;chr11:96213183..96213188,+!p@chr11:96213183..96213188,+!0.80!5.26!Hoxb2;;chr12:39510260..39510271,+!p10@Etv1!0.80!5.26!Etv1;;chr18:3281034..3281104,-!p1@Crem!0.79!39.45!Crem;;chr19:7342725..7342784,+!p1@Rcor2!0.79!23.09!Rcor2;;chr14:17407970..17408015,-!p2@Rarb!0.79!14.91!Rarb;;chr5:120121020..120121049,+!p1@Tbx3!0.78!33.61!Tbx3;;chr18:84255649..84255661,-!p4@Tshz1!0.78!14.32!Tshz1;;chr11:96143666..96143725,+!p1@Hoxb8!0.78!5.85!Hoxb8;;chr19:5447886..5447905,+!p1@Fosl1!0.78!4.97!Fosl1;;chr2:81893535..81893548,+!p1@Zfp804a!0.78!4.97!Zfp804a;;chr7:116154364..116154444,+!p1@Tub!0.77!8.77!Tub;;chr12:86814833..86814846,+!p1@Fos!0.76!123.33!Fos;;chr11:96153767..96153822,+!p1@Hoxb6!0.76!7.60!Hoxb6;;chr10:80870405..80870428,-!p4@Nfic!0.75!13.44!Nfic;;chr9:106356243..106356264,+!p2@Pcbp4!0.74!21.33!Pcbp4;;chr1:57029281..57029326,-!p1@Satb2!0.74!7.31!Satb2;;chr3:32264565..32264613,-!p1@Zmat3!0.73!53.78!Zmat3;;chr2:44968775..44968795,-!p4@Zeb2!0.73!22.80!Zeb2;;chr13:44936077..44936096,+!p9@Jarid2!0.73!4.38!Jarid2;;chr3:90097275..90097302,+!p2@Gatad2b!0.72!10.52!Gatad2b;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.72!5.55!Hoxb2;;chr10:119913310..119913366,-!p1@Hmga2!0.71!35.95!Hmga2;;chr10:67375368..67375433,-!p1@Zfp365!0.71!7.89!Zfp365;;chr7:38558574..38558611,-!p2@Zfp536!0.71!5.26!Zfp536;;chr2:74565247..74565258,+!p3@Hoxd4!0.71!4.09!Hoxd4;;chr1:179374820..179374831,+!p3@Zfp238!0.71!4.09!Zfp238;;chr2:181501745..181501778,+!p1@Myt1!0.71!4.09!Myt1;;chr9:106356278..106356292,+!p3@Pcbp4!0.70!7.31!Pcbp4;;chr11:96145450..96145517,+!p2@Hoxb7!0.70!6.43!Hoxb7;;chr12:39507404..39507441,+!p4@Etv1!0.70!5.85!Etv1;;chr7:38558544..38558566,-!p4@Zfp536!0.70!4.68!Zfp536;;chr1:38684260..38684312,-!p2@Aff3!0.69!31.27!Aff3;;chr3:32264530..32264544,-!p2@Zmat3!0.69!6.43!Zmat3;;chr18:69752608..69752625,+!p17@Tcf4!0.69!4.68!Tcf4;;chr9:96653072..96653154,-!p1@Zbtb38!0.68!11.11!Zbtb38;;chr7:130644017..130644092,-!p1@Zkscan2!0.68!7.89!Zkscan2;;chr11:96164868..96164875,+!p5@Hoxb5!0.68!3.80!Hoxb5;;chr1:193007123..193007139,-!p1@Atf3!0.67!23.67!Atf3;;chr5:120120981..120120992,+!p5@Tbx3!0.66!4.97!Tbx3;;chr11:3189683..3189744,+!p2@Patz1!0.65!7.89!Patz1;;chr11:96160360..96160397,+!p3@Hoxb6!0.65!3.51!Hoxb6;;chr10:119913266..119913277,-!p6@Hmga2!0.65!3.51!Hmga2;;chr18:69752864..69752875,+!p25@Tcf4!0.65!3.51!Tcf4;;chr14:17407671..17407684,-!p7@Rarb!0.65!3.51!Rarb;;chr4:99322855..99322867,+!p2@Foxd3!0.65!3.51!Foxd3;;chr4:22415443..22415506,-!p1@Pou3f2!0.65!3.51!Pou3f2;;chr2:44968721..44968734,-!p6@Zeb2!0.64!14.61!Zeb2;;chr4:54960870..54960926,+!p1@Zfp462!0.64!14.03!Zfp462;;chr9:72380594..72380635,+!p3@Rfx7!0.64!6.43!Rfx7;;chr13:78339476..78339515,-!p1@Nr2f1!0.64!5.55!Nr2f1;;chr19:7342786..7342803,+!p2@Rcor2!0.64!4.68!Rcor2;;chr18:83079981..83080037,+!p6@Zfp516!0.63!6.14!Zfp516;;chr2:74542918..74542971,+!p1@Hoxd8!0.63!5.26!Hoxd8;;chr4:122911086..122911112,+!p1@Heyl!0.62!43.84!Heyl;;chr2:163028808..163028869,+!p1@Tox2!0.62!13.15!Tox2;;chr14:52634234..52634281,-!p3@Zfp219!0.62!9.94!Zfp219;;chr15:102844431..102844445,+!p1@Hoxc5!0.62!3.21!Hoxc5;;chr11:96143962..96144035,+!p2@Hoxb8!0.62!3.21!Hoxb8;;chr5:120120834..120120845,+!p8@Tbx3!0.62!3.21!Tbx3;;chr7:38554684..38554696,-!p10@Zfp536!0.62!3.21!Zfp536;;chr7:25292331..25292421,+!p1@Zfp428!0.61!26.01!Zfp428;;chr10:67375223..67375240,-!p4@Zfp365!0.61!3.51!Zfp365;;chr2:44968737..44968758,-!p2@Zeb2!0.60!20.46!Zeb2;;chr14:52935788..52935817,-!p2@Sall2!0.60!7.31!Sall2;;chr16:15887371..15887385,+!p1@Cebpd!0.59!120.99!Cebpd;;chr15:103170516..103170531,-!p2@Zfp385a!0.59!7.89!Zfp385a;;chr18:79306577..79306592,-!p3@Setbp1!0.59!6.43!Setbp1;;chr11:85646427..85646451,+!p4@Tbx2!0.59!5.55!Tbx2;;chr2:74549968..74549996,+!p1@Hoxd3!0.59!3.80!Hoxd3;;chr5:120121091..120121100,+!p7@Tbx3!0.59!3.51!Tbx3;;chr7:138697803..138697813,+!p1@Hmx2!0.59!2.92!Hmx2;;chr13:44936106..44936121,+!p13@Jarid2!0.59!2.92!Jarid2;;chr13:40825785..40825798,-!p9@Tfap2a!0.59!2.92!Tfap2a;;chr13:40825465..40825469,-!p2@Tfap2a!0.59!2.92!Tfap2a;;chr2:71367605..71367621,+!p9@Dlx1!0.59!2.92!Dlx1;;chr4:99323046..99323073,+!p3@Foxd3!0.59!2.92!Foxd3;;chr12:39506873..39506913,+!p1@Etv1!0.58!35.66!Etv1;;chr15:102034510..102034549,+!p4@Zfp740!0.58!7.89!Zfp740;;chr3:51144477..51144506,-!p6@Elf2!0.58!4.68!Elf2;;chr6:52141694..52141715,-!p1@Hoxa4!0.58!3.80!Hoxa4;;chr19:55816546..55816556,+!p3@Tcf7l2!0.57!12.27!Tcf7l2;;chr16:43363190..43363242,+!p2@Zbtb20!0.57!9.94!Zbtb20;;chr10:30562571..30562597,-!p1@Hey2!0.57!7.31!Hey2;;chrX:34442872..34442899,-!p1@Nkrf!0.57!3.80!Nkrf;;chr2:17976799..17976829,+!p5@Mllt10!0.57!3.51!Mllt10;;chr10:114821393..114821431,-!p5@Thap2!0.56!8.48!Thap2;;chrX:7341077..7341091,+!p5@Tfe3!0.56!4.97!Tfe3;;chr16:43503493..43503570,+!p9@Zbtb20!0.56!4.97!Zbtb20;;chr6:47998938..47998955,-!p2@Zfp777!0.56!3.80!Zfp777;;chr7:122968213..122968266,-!p4@Sox6!0.56!3.21!Sox6;;chr7:38557752..38557793,-!p3@Zfp536!0.56!3.21!Zfp536;;chrX:108009761..108009788,+!p1@Pou3f4!0.56!2.63!Pou3f4;;chr7:38559019..38559026,-!p21@Zfp536!0.56!2.63!Zfp536;;chr2:181501988..181502026,+!p3@Myt1!0.56!2.63!Myt1;;chr15:76353005..76353021,-!p2@Scrt1!0.56!2.63!Scrt1;;chr1:92949999..92950097,+!p1@Lrrfip1!0.55!85.05!Lrrfip1;;chr11:87881569..87881633,+!p2@Vezf1!0.55!25.13!Vezf1;;chr7:25292141..25292158,+!p2@Zfp428!0.55!10.81!Zfp428;;chr16:43503720..43503739,+!p18@Zbtb20!0.55!2.92!Zbtb20;;chr13:29045559..29045574,-!p1@Sox4!0.54!260.40!Sox4;;chr12:84828663..84828679,-!p1@Dpf3!0.54!23.67!Dpf3;;chr14:98568761..98568814,-!p2@Dach1!0.54!21.04!Dach1;;c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| |expression_enrichment_score=chr8:59799772..59799789,+!p1@Hand2!2.32!564.05!Hand2;;chr5:67490284..67490302,-!p1@Phox2b!2.13!135.31!Phox2b;;chr10:86956396..86956411,-!p1@Ascl1!2.11!194.93!Ascl1;;chr2:74583776..74583815,+!p3@Hoxd3!1.91!80.08!Hoxd3;;chr11:96164821..96164865,+!p1@Hoxb5!1.83!66.63!Hoxb5;;chr15:78994907..78994926,-!p1@Sox10!1.80!152.27!Sox10;;chr12:39510206..39510249,+!p3@Etv1!1.80!62.54!Etv1;;chr7:108966820..108966835,+!p1@Phox2a!1.80!62.25!Phox2a;;chr4:99322820..99322845,+!p1@Foxd3!1.79!76.57!Foxd3;;chr5:67490474..67490494,-!p2@Phox2b!1.62!40.33!Phox2b;;chr2:146047829..146047847,+!p1@Insm1!1.61!69.26!Insm1;;chr2:71384802..71384815,-!p1@Dlx2!1.58!45.30!Dlx2;;chr2:71367871..71367898,+!p1@Dlx1!1.57!35.95!Dlx1;;chr12:39510090..39510114,+!p6@Etv1!1.45!26.89!Etv1;;chr5:120120667..120120685,+!p3@Tbx3!1.41!47.05!Tbx3;;chr15:102865131..102865151,+!p2@Hoxc4!1.41!28.06!Hoxc4;;chr6:52154414..52154462,-!p1@Hoxa5!1.40!32.73!Hoxa5;;chr6:52154386..52154407,-!p2@Hoxa5!1.40!30.39!Hoxa5;;chr5:67490391..67490404,-!p3@Phox2b!1.40!23.96!Phox2b;;chr14:17407549..17407575,-!p3@Rarb!1.37!33.90!Rarb;;chr14:17407878..17407926,-!p1@Rarb!1.34!46.76!Rarb;;chr5:120121169..120121171,+!p4@Tbx3!1.34!36.82!Tbx3;;chr15:102865088..102865107,+!p1@Hoxc4!1.33!27.18!Hoxc4;;chr12:39510290..39510309,+!p5@Etv1!1.33!20.17!Etv1;;chr7:38557887..38557910,-!p5@Zfp536!1.32!19.87!Zfp536;;chr5:138199361..138199441,+!p2@Tsc22d4!1.30!35.66!Tsc22d4;;chr2:74565306..74565327,+!p2@Hoxd4!1.24!16.37!Hoxd4;;chr3:34548909..34548927,+!p1@Sox2!1.21!25.43!Sox2;;chr2:71367142..71367167,+!p2@Dlx1!1.21!15.20!Dlx1;;chr11:85646303..85646329,+!p1@Tbx2!1.20!97.03!Tbx2;;chr13:44936126..44936164,+!p6@Jarid2!1.17!16.07!Jarid2;;chr2:71384458..71384526,-!p2@Dlx2!1.17!13.74!Dlx2;;chr10:119913278..119913298,-!p2@Hmga2!1.15!29.23!Hmga2;;chr11:85646263..85646278,+!p2@Tbx2!1.14!32.73!Tbx2;;chr5:67490346..67490357,-!p4@Phox2b!1.11!11.98!Phox2b;;chr3:34548946..34548972,+!p2@Sox2!1.08!12.27!Sox2;;chr12:30213247..30213333,+!p1@Myt1l!1.08!11.11!Myt1l;;chr3:95032091..95032183,-!p1@Mllt11!1.07!92.65!Mllt11;;chr12:39507680..39507715,+!p2@Etv1!1.07!21.33!Etv1;;chr18:69752912..69752928,+!p9@Tcf4!1.06!15.78!Tcf4;;chr17:25707623..25707639,-!p1@Sox8!1.05!43.84!Sox8;;chr5:67490333..67490342,-!p5@Phox2b!1.05!10.23!Phox2b;;chr5:67490412..67490421,-!p6@Phox2b!1.05!10.23!Phox2b;;chr12:12948633..12948651,-!p1@Mycn!1.04!97.61!Mycn;;chr11:85646341..85646352,+!p3@Tbx2!1.04!19.87!Tbx2;;chr1:179374784..179374800,+!p2@Zfp238!1.04!11.69!Zfp238;;chr15:102865048..102865073,+!p3@Hoxc4!1.03!12.27!Hoxc4;;chr1:6724908..6724955,+!p2@St18!1.03!9.64!St18;;chr12:28027561..28027591,-!p1@Sox11!1.02!63.71!Sox11;;chr9:71743854..71743909,-!p1@Tcf12!1.01!74.23!Tcf12;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!1.01!24.84!Zfhx3;;chr13:40829137..40829205,-!p1@Tfap2a!1.01!10.52!Tfap2a;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!1.00!15.49!Hoxb2;;chr11:96180045..96180059,+!p1@Hoxb4!1.00!12.86!Hoxb4;;chr4:150503457..150503498,-!p3@Camta1!1.00!10.23!Camta1;;chr18:69752638..69752665,+!p19@Tcf4!1.00!9.94!Tcf4;;chr2:74583741..74583750,+!p10@Hoxd3!1.00!9.06!Hoxd3;;chr11:85646469..85646488,+!p5@Tbx2!0.99!13.15!Tbx2;;chr18:84255841..84255883,-!p1@Tshz1!0.96!59.33!Tshz1;;chr13:40826150..40826167,-!p3@Tfap2a!0.96!9.06!Tfap2a;;chr12:39510042..39510069,+!p8@Etv1!0.95!7.89!Etv1;;chrX:58146612..58146615,-!p1@Sox3!0.95!7.89!Sox3;;chr2:71384401..71384424,-!p3@Dlx2!0.95!7.89!Dlx2;;chr2:71384425..71384456,-!p4@Dlx2!0.93!7.60!Dlx2;;chr5:67490447..67490458,-!p7@Phox2b!0.93!7.60!Phox2b;;chr3:5218629..5218684,+!p1@Zfhx4!0.92!24.55!Zfhx4;;chr11:96164905..96164919,+!p2@Hoxb5!0.90!7.01!Hoxb5;;chr11:96160426..96160443,+!p2@Hoxb6!0.89!6.72!Hoxb6;;chr14:34791937..34791977,-!p1@Zfp488!0.89!6.72!Zfp488;;chr9:106356211..106356242,+!p1@Pcbp4!0.88!135.90!Pcbp4;;chr14:17407857..17407875,-!p4@Rarb!0.87!6.43!Rarb;;chr6:53523358..53523388,+!p1@Creb5!0.85!77.16!Creb5;;chr10:119913546..119913583,-!p3@Hmga2!0.84!12.86!Hmga2;;chr7:38554763..38554780,-!p1@Zfp536!0.83!10.81!Zfp536;;chr16:91270004..91270023,+!p1@Olig1!0.83!6.72!Olig1;;chr5:120121446..120121461,+!p2@Tbx3!0.82!19.58!Tbx3;;chr2:127347067..127347093,-!p1@Kcnip3!0.82!9.64!Kcnip3;;chr5:120121262..120121282,+!p6@Tbx3!0.82!6.43!Tbx3;;chr6:83020355..83020371,-!p1@Tlx2!0.82!5.55!Tlx2;;chr11:96180069..96180089,+!p3@Hoxb4!0.82!5.55!Hoxb4;;chr10:76424613..76424689,-!p1@Pcbp3!0.81!125.09!Pcbp3;;chr10:119914001..119914078,-!p4@Hmga2!0.81!7.60!Hmga2;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.80!7.31!Hoxb2;;chr11:96213183..96213188,+!p@chr11:96213183..96213188,+!0.80!5.26!Hoxb2;;chr12:39510260..39510271,+!p10@Etv1!0.80!5.26!Etv1;;chr18:3281034..3281104,-!p1@Crem!0.79!39.45!Crem;;chr19:7342725..7342784,+!p1@Rcor2!0.79!23.09!Rcor2;;chr14:17407970..17408015,-!p2@Rarb!0.79!14.91!Rarb;;chr5:120121020..120121049,+!p1@Tbx3!0.78!33.61!Tbx3;;chr18:84255649..84255661,-!p4@Tshz1!0.78!14.32!Tshz1;;chr11:96143666..96143725,+!p1@Hoxb8!0.78!5.85!Hoxb8;;chr19:5447886..5447905,+!p1@Fosl1!0.78!4.97!Fosl1;;chr2:81893535..81893548,+!p1@Zfp804a!0.78!4.97!Zfp804a;;chr7:116154364..116154444,+!p1@Tub!0.77!8.77!Tub;;chr12:86814833..86814846,+!p1@Fos!0.76!123.33!Fos;;chr11:96153767..96153822,+!p1@Hoxb6!0.76!7.60!Hoxb6;;chr10:80870405..80870428,-!p4@Nfic!0.75!13.44!Nfic;;chr9:106356243..106356264,+!p2@Pcbp4!0.74!21.33!Pcbp4;;chr1:57029281..57029326,-!p1@Satb2!0.74!7.31!Satb2;;chr3:32264565..32264613,-!p1@Zmat3!0.73!53.78!Zmat3;;chr2:44968775..44968795,-!p4@Zeb2!0.73!22.80!Zeb2;;chr13:44936077..44936096,+!p9@Jarid2!0.73!4.38!Jarid2;;chr3:90097275..90097302,+!p2@Gatad2b!0.72!10.52!Gatad2b;;chr11:96213264..96213282,+!p@chr11:96213264..96213282,+!0.72!5.55!Hoxb2;;chr10:119913310..119913366,-!p1@Hmga2!0.71!35.95!Hmga2;;chr10:67375368..67375433,-!p1@Zfp365!0.71!7.89!Zfp365;;chr7:38558574..38558611,-!p2@Zfp536!0.71!5.26!Zfp536;;chr2:74565247..74565258,+!p3@Hoxd4!0.71!4.09!Hoxd4;;chr1:179374820..179374831,+!p3@Zfp238!0.71!4.09!Zfp238;;chr2:181501745..181501778,+!p1@Myt1!0.71!4.09!Myt1;;chr9:106356278..106356292,+!p3@Pcbp4!0.70!7.31!Pcbp4;;chr11:96145450..96145517,+!p2@Hoxb7!0.70!6.43!Hoxb7;;chr12:39507404..39507441,+!p4@Etv1!0.70!5.85!Etv1;;chr7:38558544..38558566,-!p4@Zfp536!0.70!4.68!Zfp536;;chr1:38684260..38684312,-!p2@Aff3!0.69!31.27!Aff3;;chr3:32264530..32264544,-!p2@Zmat3!0.69!6.43!Zmat3;;chr18:69752608..69752625,+!p17@Tcf4!0.69!4.68!Tcf4;;chr9:96653072..96653154,-!p1@Zbtb38!0.68!11.11!Zbtb38;;chr7:130644017..130644092,-!p1@Zkscan2!0.68!7.89!Zkscan2;;chr11:96164868..96164875,+!p5@Hoxb5!0.68!3.80!Hoxb5;;chr1:193007123..193007139,-!p1@Atf3!0.67!23.67!Atf3;;chr5:120120981..120120992,+!p5@Tbx3!0.66!4.97!Tbx3;;chr11:3189683..3189744,+!p2@Patz1!0.65!7.89!Patz1;;chr11:96160360..96160397,+!p3@Hoxb6!0.65!3.51!Hoxb6;;chr10:119913266..119913277,-!p6@Hmga2!0.65!3.51!Hmga2;;chr18:69752864..69752875,+!p25@Tcf4!0.65!3.51!Tcf4;;chr14:17407671..17407684,-!p7@Rarb!0.65!3.51!Rarb;;chr4:99322855..99322867,+!p2@Foxd3!0.65!3.51!Foxd3;;chr4:22415443..22415506,-!p1@Pou3f2!0.65!3.51!Pou3f2;;chr2:44968721..44968734,-!p6@Zeb2!0.64!14.61!Zeb2;;chr4:54960870..54960926,+!p1@Zfp462!0.64!14.03!Zfp462;;chr9:72380594..72380635,+!p3@Rfx7!0.64!6.43!Rfx7;;chr13:78339476..78339515,-!p1@Nr2f1!0.64!5.55!Nr2f1;;chr19:7342786..7342803,+!p2@Rcor2!0.64!4.68!Rcor2;;chr18:83079981..83080037,+!p6@Zfp516!0.63!6.14!Zfp516;;chr2:74542918..74542971,+!p1@Hoxd8!0.63!5.26!Hoxd8;;chr4:122911086..122911112,+!p1@Heyl!0.62!43.84!Heyl;;chr2:163028808..163028869,+!p1@Tox2!0.62!13.15!Tox2;;chr14:52634234..52634281,-!p3@Zfp219!0.62!9.94!Zfp219;;chr15:102844431..102844445,+!p1@Hoxc5!0.62!3.21!Hoxc5;;chr11:96143962..96144035,+!p2@Hoxb8!0.62!3.21!Hoxb8;;chr5:120120834..120120845,+!p8@Tbx3!0.62!3.21!Tbx3;;chr7:38554684..38554696,-!p10@Zfp536!0.62!3.21!Zfp536;;chr7:25292331..25292421,+!p1@Zfp428!0.61!26.01!Zfp428;;chr10:67375223..67375240,-!p4@Zfp365!0.61!3.51!Zfp365;;chr2:44968737..44968758,-!p2@Zeb2!0.60!20.46!Zeb2;;chr14:52935788..52935817,-!p2@Sall2!0.60!7.31!Sall2;;chr16:15887371..15887385,+!p1@Cebpd!0.59!120.99!Cebpd;;chr15:103170516..103170531,-!p2@Zfp385a!0.59!7.89!Zfp385a;;chr18:79306577..79306592,-!p3@Setbp1!0.59!6.43!Setbp1;;chr11:85646427..85646451,+!p4@Tbx2!0.59!5.55!Tbx2;;chr2:74549968..74549996,+!p1@Hoxd3!0.59!3.80!Hoxd3;;chr5:120121091..120121100,+!p7@Tbx3!0.59!3.51!Tbx3;;chr7:138697803..138697813,+!p1@Hmx2!0.59!2.92!Hmx2;;chr13:44936106..44936121,+!p13@Jarid2!0.59!2.92!Jarid2;;chr13:40825785..40825798,-!p9@Tfap2a!0.59!2.92!Tfap2a;;chr13:40825465..40825469,-!p2@Tfap2a!0.59!2.92!Tfap2a;;chr2:71367605..71367621,+!p9@Dlx1!0.59!2.92!Dlx1;;chr4:99323046..99323073,+!p3@Foxd3!0.59!2.92!Foxd3;;chr12:39506873..39506913,+!p1@Etv1!0.58!35.66!Etv1;;chr15:102034510..102034549,+!p4@Zfp740!0.58!7.89!Zfp740;;chr3:51144477..51144506,-!p6@Elf2!0.58!4.68!Elf2;;chr6:52141694..52141715,-!p1@Hoxa4!0.58!3.80!Hoxa4;;chr19:55816546..55816556,+!p3@Tcf7l2!0.57!12.27!Tcf7l2;;chr16:43363190..43363242,+!p2@Zbtb20!0.57!9.94!Zbtb20;;chr10:30562571..30562597,-!p1@Hey2!0.57!7.31!Hey2;;chrX:34442872..34442899,-!p1@Nkrf!0.57!3.80!Nkrf;;chr2:17976799..17976829,+!p5@Mllt10!0.57!3.51!Mllt10;;chr10:114821393..114821431,-!p5@Thap2!0.56!8.48!Thap2;;chrX:7341077..7341091,+!p5@Tfe3!0.56!4.97!Tfe3;;chr16:43503493..43503570,+!p9@Zbtb20!0.56!4.97!Zbtb20;;chr6:47998938..47998955,-!p2@Zfp777!0.56!3.80!Zfp777;;chr7:122968213..122968266,-!p4@Sox6!0.56!3.21!Sox6;;chr7:38557752..38557793,-!p3@Zfp536!0.56!3.21!Zfp536;;chrX:108009761..108009788,+!p1@Pou3f4!0.56!2.63!Pou3f4;;chr7:38559019..38559026,-!p21@Zfp536!0.56!2.63!Zfp536;;chr2:181501988..181502026,+!p3@Myt1!0.56!2.63!Myt1;;chr15:76353005..76353021,-!p2@Scrt1!0.56!2.63!Scrt1;;chr1:92949999..92950097,+!p1@Lrrfip1!0.55!85.05!Lrrfip1;;chr11:87881569..87881633,+!p2@Vezf1!0.55!25.13!Vezf1;;chr7:25292141..25292158,+!p2@Zfp428!0.55!10.81!Zfp428;;chr16:43503720..43503739,+!p18@Zbtb20!0.55!2.92!Zbtb20;;chr13:29045559..29045574,-!p1@Sox4!0.54!260.40!Sox4;;chr12:84828663..84828679,-!p1@Dpf3!0.54!23.67!Dpf3;;chr14:98568761..98568814,-!p2@Dach1!0.54!21.04!Dach1;;c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| ||
|ffid_belonging_in_development=CL:0000133,CL:0000031,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:11805-124D5 | |id=FF:11805-124D5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011144 | ||
|is_obsolete= | |||
|library_id=CNhs13082 | |||
|library_id_phase_based=2:CNhs13082 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11805 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11805 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/neurospheres%2520-%2520sympathetic%2520neuron%2520derived%252c%2520biol_rep2.CNhs13082.11805-124D5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/neurospheres%2520-%2520sympathetic%2520neuron%2520derived%252c%2520biol_rep2.CNhs13082.11805-124D5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/neurospheres%2520-%2520sympathetic%2520neuron%2520derived%252c%2520biol_rep2.CNhs13082.11805-124D5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/neurospheres%2520-%2520sympathetic%2520neuron%2520derived%252c%2520biol_rep2.CNhs13082.11805-124D5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/neurospheres%2520-%2520sympathetic%2520neuron%2520derived%252c%2520biol_rep2.CNhs13082.11805-124D5.mm9.nobarcode.rdna.fa.gz | |||
|name=neurospheres - sympathetic neuron derived, biol_rep2 | |name=neurospheres - sympathetic neuron derived, biol_rep2 | ||
|namespace= | |namespace= | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13082,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13082,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.317687963838818,0,0,0,0,0.0130018044037329,0.185239094796407,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.368049490314937,0,0,0,0,0,0,0,0,0,0,0,0,0.273410491217492,-0.0747226925113157,0,0,0,0,0,-0.0169432251171325,0.0918152144157885,0.0501063721991339,-0.390641928458338,-0.158520128470455,0.336264243659775,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0.111348509539896,0.391160897340021,0,0.135329517320834,-0.310650657339386,0.729632271656643,-0.0656811758161899,0,0.0333399087879451,0.0484922062433519,0,0,0,0.0560638956519211,0.0869832449651379,0.465583245304425,0.032516914699989,0,0,0,0,0,0,0.193094461506184,0.108662252323942,0.191992359874771,0,0,0,0.288770557392231,0 | |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 76: | ||
|rna_weight_ug=12 | |rna_weight_ug=12 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 76: | Line 96: | ||
|sample_tissue=ANATOMICAL SYSTEM | |sample_tissue=ANATOMICAL SYSTEM | ||
|top_motifs=GZF1:2.2833743789;TP53:1.93067757662;ONECUT1,2:1.88192375228;NKX3-1:1.82801678471;EN1,2:1.75018606826;SREBF1,2:1.68219677578;FOXQ1:1.66184994208;SOX2:1.62262668666;NKX2-1,4:1.45133228324;ZNF384:1.26598415163;POU3F1..4:1.25759353368;PRRX1,2:1.22029727463;HBP1_HMGB_SSRP1_UBTF:1.18954273345;JUN:1.17899112519;AHR_ARNT_ARNT2:1.09506085651;RXR{A,B,G}:1.09371254655;PAX5:1.07010497976;NANOG:1.05578524346;PBX1:1.04834015655;DBP:1.04492644556;FOXM1:1.04129320137;TEF:1.00858486973;NFE2L1:1.00206103629;MZF1:0.997983630619;MTE{core}:0.989270895217;SOX17:0.986017298726;ZBTB16:0.983931737366;ZFP161:0.966348599838;ZNF143:0.874257557914;UFEwm:0.870939486452;SOX5:0.863513909542;PDX1:0.860909853776;TFDP1:0.857983268578;HMX1:0.857365834192;TFAP2B:0.837768183996;NHLH1,2:0.833907124461;FOXP3:0.776577659566;NRF1:0.757172374738;FOX{I1,J2}:0.750949522718;LHX3,4:0.745549579835;PITX1..3:0.727701306488;FOXP1:0.720432472205;MED-1{core}:0.705179202399;ZIC1..3:0.690205933221;VSX1,2:0.676774651963;TFAP2{A,C}:0.671493613911;EGR1..3:0.662932053977;PAX4:0.654225364315;GTF2I:0.631190283408;NKX3-2:0.62994384401;LEF1_TCF7_TCF7L1,2:0.582049263532;CRX:0.578363698207;HMGA1,2:0.570129575872;TLX2:0.561892834355;FOXD3:0.5544043652;HIC1:0.530177219324;RORA:0.529757215528;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.529200188274;EP300:0.515996778829;PATZ1:0.506640323616;ADNP_IRX_SIX_ZHX:0.505796228491;ATF2:0.504810313561;EVI1:0.502478940373;IKZF1:0.484118132753;PAX8:0.48312178687;REST:0.476646447982;OCT4_SOX2{dimer}:0.467184137425;SP1:0.46469637079;ZNF423:0.425678279722;NFY{A,B,C}:0.394811314587;GTF2A1,2:0.394571021302;HOXA9_MEIS1:0.38986346874;BPTF:0.388550739445;POU6F1:0.378161884304;HAND1,2:0.371632090131;MAZ:0.368598228992;POU1F1:0.363130716438;ALX1:0.358203819064;SMAD1..7,9:0.349261961275;GFI1:0.343786893215;NFE2:0.335223324079;MYFfamily:0.330537279479;GATA4:0.320173281505;TEAD1:0.320074876645;SOX{8,9,10}:0.318880426259;RREB1:0.318125397124;E2F1..5:0.317584889335;RBPJ:0.314951867167;TFAP4:0.277303499889;STAT1,3:0.273429855971;ATF4:0.258649721724;POU5F1:0.205339027812;XCPE1{core}:0.200943411324;AIRE:0.199516225893;ELK1,4_GABP{A,B1}:0.198757402211;ZBTB6:0.192063865481;BREu{core}:0.178808200062;TAL1_TCF{3,4,12}:0.148817750891;PAX6:0.139255072857;ZNF148:0.137770081349;RFX2..5_RFXANK_RFXAP:0.131183789507;POU2F1..3:0.128183916077;CDC5L:0.124904746007;CREB1:0.121316752534;RFX1:0.119455242686;FOSL2:0.0979355962775;TFCP2:0.0975995360046;HSF1,2:0.0938460886871;FOS_FOS{B,L1}_JUN{B,D}:0.0821462938762;GFI1B:0.0775168124756;FOX{D1,D2}:0.0302301853385;TOPORS:0.0237633217024;KLF4:0.0122993473001;EBF1:-0.0216332290777;IRF7:-0.0274033190699;MTF1:-0.0613195830509;LMO2:-0.0625804798569;FOXO1,3,4:-0.0815957211705;MYB:-0.0830876738283;ATF5_CREB3:-0.104708498696;FOXL1:-0.112093191505;NR1H4:-0.117285645511;ATF6:-0.123522515103;YY1:-0.125463737476;CEBPA,B_DDIT3:-0.133970952938;NFIL3:-0.164578231006;TLX1..3_NFIC{dimer}:-0.168785485702;NFATC1..3:-0.173510643192;IKZF2:-0.199034562217;SRF:-0.20874465814;BACH2:-0.228619190536;ESRRA:-0.233700854466;PRDM1:-0.247589087353;DMAP1_NCOR{1,2}_SMARC:-0.276151832267;NKX6-1,2:-0.279789877916;bHLH_family:-0.289438197109;ZNF238:-0.317476709001;FOXN1:-0.321387482058;ESR1:-0.32239850777;STAT2,4,6:-0.348493869603;HOX{A4,D4}:-0.372943886716;CUX2:-0.389610145659;MYBL2:-0.396679419245;SPIB:-0.401239307464;T:-0.420832884384;HIF1A:-0.422787947283;HNF4A_NR2F1,2:-0.469324953962;RUNX1..3:-0.471781171663;GCM1,2:-0.477060552668;GLI1..3:-0.506861045079;NR6A1:-0.513208761004;RXRA_VDR{dimer}:-0.549219472366;TGIF1:-0.553588511308;HES1:-0.553804360489;MAFB:-0.563332638181;HNF1A:-0.565238337559;SPI1:-0.571789398046;IRF1,2:-0.639853532814;NANOG{mouse}:-0.657441346788;ELF1,2,4:-0.681696845468;NKX2-3_NKX2-5:-0.687770309573;NFKB1_REL_RELA:-0.691947537506;MEF2{A,B,C,D}:-0.699849350365;NR5A1,2:-0.712466907934;FOX{F1,F2,J1}:-0.718344381459;ETS1,2:-0.724689748386;AR:-0.732018153142;CDX1,2,4:-0.743302335315;HLF:-0.75007268094;TBP:-0.782335479965;NR3C1:-0.792815973901;FOXA2:-0.799650078933;ALX4:-0.811338787162;PAX1,9:-0.825627596181;HOX{A5,B5}:-0.827542312441;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.830547485586;NFE2L2:-0.86632341965;MYOD1:-0.876338462269;NFIX:-0.888421409223;PAX2:-0.899425430986;SNAI1..3:-1.01792048137;NKX2-2,8:-1.03607081967;ARID5B:-1.06960620331;STAT5{A,B}:-1.07757083433;GATA6:-1.10052475874;SPZ1:-1.19477201772;ZEB1:-1.38901504591;PPARG:-1.54810092254;TBX4,5:-1.98056404213 | |top_motifs=GZF1:2.2833743789;TP53:1.93067757662;ONECUT1,2:1.88192375228;NKX3-1:1.82801678471;EN1,2:1.75018606826;SREBF1,2:1.68219677578;FOXQ1:1.66184994208;SOX2:1.62262668666;NKX2-1,4:1.45133228324;ZNF384:1.26598415163;POU3F1..4:1.25759353368;PRRX1,2:1.22029727463;HBP1_HMGB_SSRP1_UBTF:1.18954273345;JUN:1.17899112519;AHR_ARNT_ARNT2:1.09506085651;RXR{A,B,G}:1.09371254655;PAX5:1.07010497976;NANOG:1.05578524346;PBX1:1.04834015655;DBP:1.04492644556;FOXM1:1.04129320137;TEF:1.00858486973;NFE2L1:1.00206103629;MZF1:0.997983630619;MTE{core}:0.989270895217;SOX17:0.986017298726;ZBTB16:0.983931737366;ZFP161:0.966348599838;ZNF143:0.874257557914;UFEwm:0.870939486452;SOX5:0.863513909542;PDX1:0.860909853776;TFDP1:0.857983268578;HMX1:0.857365834192;TFAP2B:0.837768183996;NHLH1,2:0.833907124461;FOXP3:0.776577659566;NRF1:0.757172374738;FOX{I1,J2}:0.750949522718;LHX3,4:0.745549579835;PITX1..3:0.727701306488;FOXP1:0.720432472205;MED-1{core}:0.705179202399;ZIC1..3:0.690205933221;VSX1,2:0.676774651963;TFAP2{A,C}:0.671493613911;EGR1..3:0.662932053977;PAX4:0.654225364315;GTF2I:0.631190283408;NKX3-2:0.62994384401;LEF1_TCF7_TCF7L1,2:0.582049263532;CRX:0.578363698207;HMGA1,2:0.570129575872;TLX2:0.561892834355;FOXD3:0.5544043652;HIC1:0.530177219324;RORA:0.529757215528;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.529200188274;EP300:0.515996778829;PATZ1:0.506640323616;ADNP_IRX_SIX_ZHX:0.505796228491;ATF2:0.504810313561;EVI1:0.502478940373;IKZF1:0.484118132753;PAX8:0.48312178687;REST:0.476646447982;OCT4_SOX2{dimer}:0.467184137425;SP1:0.46469637079;ZNF423:0.425678279722;NFY{A,B,C}:0.394811314587;GTF2A1,2:0.394571021302;HOXA9_MEIS1:0.38986346874;BPTF:0.388550739445;POU6F1:0.378161884304;HAND1,2:0.371632090131;MAZ:0.368598228992;POU1F1:0.363130716438;ALX1:0.358203819064;SMAD1..7,9:0.349261961275;GFI1:0.343786893215;NFE2:0.335223324079;MYFfamily:0.330537279479;GATA4:0.320173281505;TEAD1:0.320074876645;SOX{8,9,10}:0.318880426259;RREB1:0.318125397124;E2F1..5:0.317584889335;RBPJ:0.314951867167;TFAP4:0.277303499889;STAT1,3:0.273429855971;ATF4:0.258649721724;POU5F1:0.205339027812;XCPE1{core}:0.200943411324;AIRE:0.199516225893;ELK1,4_GABP{A,B1}:0.198757402211;ZBTB6:0.192063865481;BREu{core}:0.178808200062;TAL1_TCF{3,4,12}:0.148817750891;PAX6:0.139255072857;ZNF148:0.137770081349;RFX2..5_RFXANK_RFXAP:0.131183789507;POU2F1..3:0.128183916077;CDC5L:0.124904746007;CREB1:0.121316752534;RFX1:0.119455242686;FOSL2:0.0979355962775;TFCP2:0.0975995360046;HSF1,2:0.0938460886871;FOS_FOS{B,L1}_JUN{B,D}:0.0821462938762;GFI1B:0.0775168124756;FOX{D1,D2}:0.0302301853385;TOPORS:0.0237633217024;KLF4:0.0122993473001;EBF1:-0.0216332290777;IRF7:-0.0274033190699;MTF1:-0.0613195830509;LMO2:-0.0625804798569;FOXO1,3,4:-0.0815957211705;MYB:-0.0830876738283;ATF5_CREB3:-0.104708498696;FOXL1:-0.112093191505;NR1H4:-0.117285645511;ATF6:-0.123522515103;YY1:-0.125463737476;CEBPA,B_DDIT3:-0.133970952938;NFIL3:-0.164578231006;TLX1..3_NFIC{dimer}:-0.168785485702;NFATC1..3:-0.173510643192;IKZF2:-0.199034562217;SRF:-0.20874465814;BACH2:-0.228619190536;ESRRA:-0.233700854466;PRDM1:-0.247589087353;DMAP1_NCOR{1,2}_SMARC:-0.276151832267;NKX6-1,2:-0.279789877916;bHLH_family:-0.289438197109;ZNF238:-0.317476709001;FOXN1:-0.321387482058;ESR1:-0.32239850777;STAT2,4,6:-0.348493869603;HOX{A4,D4}:-0.372943886716;CUX2:-0.389610145659;MYBL2:-0.396679419245;SPIB:-0.401239307464;T:-0.420832884384;HIF1A:-0.422787947283;HNF4A_NR2F1,2:-0.469324953962;RUNX1..3:-0.471781171663;GCM1,2:-0.477060552668;GLI1..3:-0.506861045079;NR6A1:-0.513208761004;RXRA_VDR{dimer}:-0.549219472366;TGIF1:-0.553588511308;HES1:-0.553804360489;MAFB:-0.563332638181;HNF1A:-0.565238337559;SPI1:-0.571789398046;IRF1,2:-0.639853532814;NANOG{mouse}:-0.657441346788;ELF1,2,4:-0.681696845468;NKX2-3_NKX2-5:-0.687770309573;NFKB1_REL_RELA:-0.691947537506;MEF2{A,B,C,D}:-0.699849350365;NR5A1,2:-0.712466907934;FOX{F1,F2,J1}:-0.718344381459;ETS1,2:-0.724689748386;AR:-0.732018153142;CDX1,2,4:-0.743302335315;HLF:-0.75007268094;TBP:-0.782335479965;NR3C1:-0.792815973901;FOXA2:-0.799650078933;ALX4:-0.811338787162;PAX1,9:-0.825627596181;HOX{A5,B5}:-0.827542312441;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.830547485586;NFE2L2:-0.86632341965;MYOD1:-0.876338462269;NFIX:-0.888421409223;PAX2:-0.899425430986;SNAI1..3:-1.01792048137;NKX2-2,8:-1.03607081967;ARID5B:-1.06960620331;STAT5{A,B}:-1.07757083433;GATA6:-1.10052475874;SPZ1:-1.19477201772;ZEB1:-1.38901504591;PPARG:-1.54810092254;TBX4,5:-1.98056404213 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11805-124D5;search_select_hide=table117:11805-124D5 | |||
}} | }} |
Latest revision as of 18:21, 4 June 2020
Name: | neurospheres - sympathetic neuron derived, biol_rep2 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs13082 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs13082
0 | 0 |
1 | 0.111 |
10 | 0 |
100 | 0.05 |
1000 | 0 |
1001 | -0.0356 |
1002 | -0.0941 |
1003 | -0.0467 |
1004 | 0 |
1005 | 0 |
1006 | 0 |
1007 | -0.0275 |
1008 | 0 |
1009 | 0.0833 |
101 | -0.00347 |
1010 | 0 |
1011 | 0 |
1012 | 0 |
1013 | 0.0653 |
1014 | -0.0851 |
1015 | 0.145 |
1016 | 0.397 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0.391 |
1021 | 0.111 |
1022 | -0.124 |
1023 | 0 |
1024 | -0.14 |
1025 | -0.0611 |
1026 | 0 |
1027 | 0.44 |
1028 | 0 |
1029 | -0.0363 |
103 | 0 |
1030 | 0 |
1031 | 0.514 |
1032 | 0.0262 |
1033 | 0.0743 |
1034 | 0 |
1035 | 0 |
1036 | -0.0419 |
1037 | 0 |
1038 | 0.0367 |
1039 | -0.162 |
104 | 0 |
1040 | 0.319 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13082
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13082
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.153 |
10 | 10 | 0.0757 |
100 | 100 | 0.954 |
101 | 101 | 0.869 |
102 | 102 | 0.941 |
103 | 103 | 0.202 |
104 | 104 | 0.657 |
105 | 105 | 0.0739 |
106 | 106 | 0.0382 |
107 | 107 | 0.0614 |
108 | 108 | 0.997 |
109 | 109 | 0.0375 |
11 | 11 | 0.132 |
110 | 110 | 0.13 |
111 | 111 | 0.0171 |
112 | 112 | 0.0246 |
113 | 113 | 0.503 |
114 | 114 | 0.0822 |
115 | 115 | 0.629 |
116 | 116 | 0.487 |
117 | 117 | 0.359 |
118 | 118 | 0.697 |
119 | 119 | 0.0371 |
12 | 12 | 0.663 |
120 | 120 | 0.607 |
121 | 121 | 0.119 |
122 | 122 | 0.354 |
123 | 123 | 0.469 |
124 | 124 | 0.398 |
125 | 125 | 0.733 |
126 | 126 | 0.205 |
127 | 127 | 0.219 |
128 | 128 | 0.0242 |
129 | 129 | 0.372 |
13 | 13 | 0.0134 |
130 | 130 | 0.975 |
131 | 131 | 0.72 |
132 | 132 | 0.315 |
133 | 133 | 0.517 |
134 | 134 | 0.953 |
135 | 135 | 0.726 |
136 | 136 | 0.69 |
137 | 137 | 0.319 |
138 | 138 | 0.938 |
139 | 139 | 0.165 |
14 | 14 | 0.444 |
140 | 140 | 0.152 |
141 | 141 | 0.275 |
142 | 142 | 0.663 |
143 | 143 | 0.93 |
144 | 144 | 0.912 |
145 | 145 | 0.333 |
146 | 146 | 0.374 |
147 | 147 | 0.653 |
148 | 148 | 0.424 |
149 | 149 | 0.118 |
15 | 15 | 0.0736 |
150 | 150 | 0.461 |
151 | 151 | 0.338 |
152 | 152 | 0.113 |
153 | 153 | 0.85 |
154 | 154 | 0.944 |
155 | 155 | 0.636 |
156 | 156 | 1.2857e-11 |
157 | 157 | 0.253 |
158 | 158 | 0.32 |
159 | 159 | 0.23 |
160 | 160 | 0.106 |
161 | 161 | 0.321 |
162 | 162 | 0.9 |
163 | 163 | 0.683 |
164 | 164 | 0.0939 |
165 | 165 | 0.173 |
166 | 166 | 0.857 |
167 | 167 | 0.395 |
168 | 168 | 0.706 |
169 | 169 | 0.00729 |
17 | 17 | 0.0854 |
18 | 18 | 0.864 |
19 | 19 | 0.194 |
2 | 2 | 0.554 |
20 | 20 | 0.775 |
21 | 21 | 0.363 |
22 | 22 | 0.288 |
23 | 23 | 0.289 |
24 | 24 | 0.0691 |
25 | 25 | 0.342 |
26 | 26 | 0.0213 |
27 | 27 | 0.228 |
28 | 28 | 0.417 |
29 | 29 | 0.389 |
3 | 3 | 0.123 |
30 | 30 | 0.641 |
31 | 31 | 0.797 |
32 | 32 | 0.199 |
33 | 33 | 0.268 |
34 | 34 | 0.406 |
35 | 35 | 0.885 |
36 | 36 | 0.643 |
37 | 37 | 0.0721 |
38 | 38 | 0.225 |
39 | 39 | 0.572 |
4 | 4 | 0.524 |
40 | 40 | 0.414 |
41 | 41 | 0.165 |
42 | 42 | 0.288 |
43 | 43 | 0.25 |
44 | 44 | 0.226 |
45 | 45 | 0.351 |
46 | 46 | 0.251 |
47 | 47 | 0.19 |
48 | 48 | 0.113 |
49 | 49 | 0.158 |
5 | 5 | 0.23 |
50 | 50 | 0.711 |
51 | 51 | 0.558 |
52 | 52 | 0.337 |
53 | 53 | 0.382 |
54 | 54 | 0.692 |
55 | 55 | 0.661 |
56 | 56 | 0.644 |
57 | 57 | 0.784 |
58 | 58 | 0.104 |
59 | 59 | 0.0313 |
6 | 6 | 0.58 |
60 | 60 | 0.0743 |
61 | 61 | 0.324 |
62 | 62 | 0.0373 |
63 | 63 | 0.115 |
64 | 64 | 0.399 |
65 | 65 | 0.108 |
66 | 66 | 0.676 |
67 | 67 | 0.598 |
68 | 68 | 0.67 |
69 | 69 | 0.976 |
7 | 7 | 0.0404 |
70 | 70 | 0.00599 |
71 | 71 | 0.111 |
72 | 72 | 0.203 |
73 | 73 | 0.224 |
74 | 74 | 0.97 |
75 | 75 | 0.15 |
76 | 76 | 0.83 |
77 | 77 | 0.185 |
78 | 78 | 0.0661 |
79 | 79 | 0.167 |
8 | 8 | 0.098 |
80 | 80 | 0.328 |
81 | 81 | 0.67 |
82 | 82 | 0.0158 |
83 | 83 | 0.0773 |
84 | 84 | 0.295 |
85 | 85 | 0.149 |
86 | 86 | 0.326 |
87 | 87 | 0.985 |
88 | 88 | 0.568 |
89 | 89 | 0.069 |
9 | 9 | 0.453 |
90 | 90 | 0.465 |
91 | 91 | 0.333 |
92 | 92 | 0.223 |
93 | 93 | 0.317 |
94 | 94 | 0.389 |
95 | 95 | 0.131 |
96 | 96 | 0.544 |
97 | 97 | 0.77 |
98 | 98 | 0.0988 |
99 | 99 | 0.299 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13082
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011144 mouse neurospheres - sympathetic neuron derived sample
part_of relathionship
UBERON:0000013 sympathetic nervous system
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0000107 (autonomic neuron)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000013 (sympathetic nervous system)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000350 (experimentally modified sample)
0011144 (mouse neurospheres - sympathetic neuron derived sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)