FFCP PHASE1:Hg19::chr17:75663074..75663098,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:75663074..75663098,+
|short_description=p@chr17:75663074..75663098,+
|description=CAGE_peak_at_chr17:75663074..75663098,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:75663074..75663098,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_at_chr17:75663074..75663098,+ | |||
|id=chr17:75663074..75663098,+ | |||
|ontology_enrichment_celltype=CL:0000791!4.62e-32!18;CL:0000789!4.62e-32!18;CL:0002420!4.62e-32!18;CL:0002419!4.62e-32!18;CL:0000790!4.62e-32!18;CL:0000838!8.48e-32!52;CL:0000542!5.48e-31!53;CL:0000051!5.48e-31!53;CL:0000084!1.15e-26!25;CL:0000827!1.15e-26!25;CL:0000625!7.15e-21!11;CL:0000037!1.40e-14!172;CL:0000566!1.40e-14!172;CL:0000738!7.73e-14!140;CL:0002087!1.31e-13!119;CL:0000988!5.35e-13!182;CL:0002032!7.50e-12!165;CL:0000837!7.50e-12!165;CL:0000624!3.68e-11!6;CL:0002031!6.42e-11!124 | |||
|ontology_enrichment_celltype_v019=CL:0000791;9.37e-49;18!CL:0000789;9.37e-49;18!CL:0002419;9.37e-49;18!CL:0000625;2.85e-39;11!CL:0000084;2.47e-38;25!CL:0000542;6.00e-18;53!CL:0000624;8.84e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.93e-49,18;CL:0000789,5.93e-49,18;CL:0002420,5.93e-49,18;CL:0002419,5.93e-49,18;CL:0000790,5.93e-49,18;CL:0000625,3.07e-39,11;CL:0000084,1.39e-38,25;CL:0000827,1.39e-38,25;CL:0000838,9.62e-31,52;CL:0000542,4.74e-30,53;CL:0000051,4.74e-30,53;CL:0002087,3.69e-14,115;CL:0000738,4.19e-12,136;CL:0002031,4.96e-11,120;CL:0000624,7.72e-10,6;CL:0000037,1.26e-08,168;CL:0000893,4.02e-08,2;CL:0002489,4.02e-08,2;CL:0000809,4.02e-08,2;CL:0000808,4.02e-08,2;CL:0000894,4.02e-08,2;CL:0000806,4.02e-08,2;CL:0000807,4.02e-08,2;CL:0000805,4.02e-08,2;CL:0002425,4.02e-08,2;CL:0000988,6.98e-08,177;CL:0002032,1.28e-07,161;CL:0000837,1.28e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;9.37e-49;18!CL:0000051;6.00e-18;53!CL:0002425;8.75e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.81e-15!15;UBERON:0000179!3.81e-15!15;UBERON:0000463!3.81e-15!15;UBERON:0004177!3.38e-09!7;UBERON:0002370!2.13e-08!4;UBERON:0005058!2.13e-08!4;UBERON:0009113!2.13e-08!4;UBERON:0003295!2.13e-08!4;UBERON:0005562!2.13e-08!4;UBERON:0007023!2.88e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.08e-17;15!UBERON:0000179;2.08e-17;15!UBERON:0000463;2.08e-17;15!UBERON:0002390;6.65e-10;32!UBERON:0002193;1.74e-08;42!UBERON:0002370;2.08e-08;2!UBERON:0005058;2.08e-08;2!UBERON:0009113;2.08e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.39e-17,15;UBERON:0000179,4.39e-17,15;UBERON:0000463,4.39e-17,15;UBERON:0002370,7.24e-15,4;UBERON:0005058,7.24e-15,4;UBERON:0009113,7.24e-15,4;UBERON:0003295,7.24e-15,4;UBERON:0005562,7.24e-15,4;UBERON:0003351,6.26e-10,6;UBERON:0001042,5.80e-09,10;UBERON:0009145,5.80e-09,10;UBERON:0004177,1.63e-08,7;UBERON:0005057,1.63e-08,7;UBERON:0006562,4.08e-08,11 | |||
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| ||
|short_description=p@chr17:75663074..75663098,+ | |||
}} | }} |
Latest revision as of 21:50, 25 July 2015
Short description: | p@chr17:75663074..75663098, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:75663074..75663098, + |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.93e-49 | 18 |
alpha-beta T cell | 5.93e-49 | 18 |
immature T cell | 5.93e-49 | 18 |
mature T cell | 5.93e-49 | 18 |
immature alpha-beta T cell | 5.93e-49 | 18 |
CD8-positive, alpha-beta T cell | 3.07e-39 | 11 |
T cell | 1.39e-38 | 25 |
pro-T cell | 1.39e-38 | 25 |
lymphoid lineage restricted progenitor cell | 9.62e-31 | 52 |
lymphocyte | 4.74e-30 | 53 |
common lymphoid progenitor | 4.74e-30 | 53 |
nongranular leukocyte | 3.69e-14 | 115 |
leukocyte | 4.19e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 4.96e-11 | 120 |
CD4-positive, alpha-beta T cell | 7.72e-10 | 6 |
hematopoietic stem cell | 1.26e-08 | 168 |
thymocyte | 4.02e-08 | 2 |
double negative thymocyte | 4.02e-08 | 2 |
double-positive, alpha-beta thymocyte | 4.02e-08 | 2 |
DN4 thymocyte | 4.02e-08 | 2 |
DN1 thymic pro-T cell | 4.02e-08 | 2 |
DN2 thymocyte | 4.02e-08 | 2 |
DN3 thymocyte | 4.02e-08 | 2 |
immature single positive thymocyte | 4.02e-08 | 2 |
early T lineage precursor | 4.02e-08 | 2 |
hematopoietic cell | 6.98e-08 | 177 |
hematopoietic oligopotent progenitor cell | 1.28e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.28e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 4.39e-17 | 15 |
haemolymphatic fluid | 4.39e-17 | 15 |
organism substance | 4.39e-17 | 15 |
thymus | 7.24e-15 | 4 |
hemolymphoid system gland | 7.24e-15 | 4 |
thymic region | 7.24e-15 | 4 |
pharyngeal gland | 7.24e-15 | 4 |
thymus primordium | 7.24e-15 | 4 |
pharyngeal epithelium | 6.26e-10 | 6 |
chordate pharynx | 5.80e-09 | 10 |
pharyngeal region of foregut | 5.80e-09 | 10 |
hemopoietic organ | 1.63e-08 | 7 |
immune organ | 1.63e-08 | 7 |
pharynx | 4.08e-08 | 11 |