FFCP PHASE1:Hg19::chr14:22925634..22925675,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12258 | |HGNC=12258 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000390475_5end | |association_with_transcript=-5bp_to_ENST00000390475_5end | ||
|cluster_id=chr14:22925634..22925675,+ | |||
|coexpression_cluster_id=C3411 | |coexpression_cluster_id=C3411 | ||
|description=CAGE_peak_1_at_TRDJ2_5end | |description=CAGE_peak_1_at_TRDJ2_5end | ||
|id=chr14:22925634..22925675,+ | |id=chr14:22925634..22925675,+ | ||
|ontology_enrichment_celltype=CL:0000791!6.83e-22!18;CL:0000789!6.83e-22!18;CL:0002420!6.83e-22!18;CL:0002419!6.83e-22!18;CL:0000790!6.83e-22!18;CL:0000084!2.88e-14!25;CL:0000827!2.88e-14!25;CL:0000625!2.69e-13!11;CL:0000037!3.51e-12!172;CL:0000566!3.51e-12!172;CL:0000988!1.06e-10!182;CL:0002032!2.08e-10!165;CL:0000837!2.08e-10!165;CL:0000838!1.13e-08!52;CL:0000624!1.29e-08!6;CL:0000542!2.14e-08!53;CL:0000051!2.14e-08!53;CL:0000738!2.44e-08!140 | |ontology_enrichment_celltype=CL:0000791!6.83e-22!18;CL:0000789!6.83e-22!18;CL:0002420!6.83e-22!18;CL:0002419!6.83e-22!18;CL:0000790!6.83e-22!18;CL:0000084!2.88e-14!25;CL:0000827!2.88e-14!25;CL:0000625!2.69e-13!11;CL:0000037!3.51e-12!172;CL:0000566!3.51e-12!172;CL:0000988!1.06e-10!182;CL:0002032!2.08e-10!165;CL:0000837!2.08e-10!165;CL:0000838!1.13e-08!52;CL:0000624!1.29e-08!6;CL:0000542!2.14e-08!53;CL:0000051!2.14e-08!53;CL:0000738!2.44e-08!140 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.17e-21;18!CL:0000789;3.17e-21;18!CL:0002419;3.17e-21;18!CL:0000625;4.95e-16;11!CL:0000084;1.72e-14;25!CL:0000623;3.29e-10;3!CL:0000898;2.45e-09;3!CL:0000226;3.62e-09;3!CL:0000767;3.62e-09;3!CL:0000842;3.62e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.69e-21,18;CL:0000789,2.69e-21,18;CL:0002420,2.69e-21,18;CL:0002419,2.69e-21,18;CL:0000790,2.69e-21,18;CL:0000625,3.84e-16,11;CL:0000084,1.54e-14,25;CL:0000827,1.54e-14,25;CL:0000623,2.58e-10,3;CL:0000825,2.58e-10,3;CL:0000037,4.39e-10,168;CL:0000838,1.98e-09,52;CL:0000898,2.72e-09,3;CL:0000226,2.97e-09,3;CL:0000767,2.97e-09,3;CL:0000842,2.97e-09,3;CL:0000542,3.48e-09,53;CL:0000051,3.48e-09,53;CL:0000988,3.50e-09,177;CL:0002032,1.24e-07,161;CL:0000837,1.24e-07,161;CL:0000893,1.89e-07,2;CL:0002489,1.89e-07,2;CL:0000809,1.89e-07,2;CL:0000808,1.89e-07,2;CL:0000894,1.89e-07,2;CL:0000806,1.89e-07,2;CL:0000807,1.89e-07,2;CL:0000805,1.89e-07,2;CL:0002425,1.89e-07,2;CL:0000738,5.50e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;3.17e-21;18!CL:0002425;1.69e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.56e-14!15;UBERON:0000179!1.56e-14!15;UBERON:0000463!1.56e-14!15;UBERON:0007023!9.14e-13!115;UBERON:0004177!1.05e-08!7;UBERON:0002370!5.74e-08!4;UBERON:0005058!5.74e-08!4;UBERON:0009113!5.74e-08!4;UBERON:0003295!5.74e-08!4;UBERON:0005562!5.74e-08!4 | |ontology_enrichment_uberon=UBERON:0000178!1.56e-14!15;UBERON:0000179!1.56e-14!15;UBERON:0000463!1.56e-14!15;UBERON:0007023!9.14e-13!115;UBERON:0004177!1.05e-08!7;UBERON:0002370!5.74e-08!4;UBERON:0005058!5.74e-08!4;UBERON:0009113!5.74e-08!4;UBERON:0003295!5.74e-08!4;UBERON:0005562!5.74e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.02e-26;15!UBERON:0000179;1.02e-26;15!UBERON:0000463;1.02e-26;15!UBERON:0002390;1.68e-18;32!UBERON:0002193;8.27e-10;42!UBERON:0004177;8.35e-10;5!UBERON:0005057;8.35e-10;5!UBERON:0002370;1.22e-07;2!UBERON:0005058;1.22e-07;2!UBERON:0009113;1.22e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.00e-26,15;UBERON:0000179,1.00e-26,15;UBERON:0000463,1.00e-26,15;UBERON:0004177,3.38e-15,7;UBERON:0005057,3.38e-15,7;UBERON:0002370,1.92e-13,4;UBERON:0005058,1.92e-13,4;UBERON:0009113,1.92e-13,4;UBERON:0003295,1.92e-13,4;UBERON:0005562,1.92e-13,4;UBERON:0003351,6.13e-09,6;UBERON:0002390,5.96e-08,98;UBERON:0003061,5.96e-08,98;UBERON:0002193,8.77e-07,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,2.36018566109342,2.68680578668049,1.70297735647684,0,0,0,0,0,0,2.21598163412751,0.601633342410425,0.651032612147555,0.895661896959697,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0.196709770113833,0.786021525498329,0.205601498999509,4.51403537554831,1.62961133316795,2.8406868344084,0,5.79334375802903,2.3568472597987,2.87994062958707,2.97884250141517,3.71464827204458,3.38154303655683,4.60426132890293,4.97430032014527,3.76744011455568,0.889719378972363,2.67540828089713,1.04535523804977,4.87230173599535,3.06576394881537,2.40539211837841,3.54227568827304,3.18565414324097,7.1619179924206,5.70271226669025,1.6563263098555,1.79181255616186,2.49861453104692,1.4206635122641,3.28451198768419,0.201606743224732,0,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,2.07328115540772,0.432359860250884,1.38866676769018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,63.55227664433,11.8218456121156,2.80315847317372,5.90377966886842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,2.5885704098234,2.77491650288955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657779629937804,1.3071772551245,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,7.61171413848254,5.35246044999663,2.27858874869665,4.2881719582402,2.87953591160336,2.59389324477087,3.24018862342869,5.55187623405989,0,0,0,0,0.144269212976445,0,0,0.199579371432817,27.0022571886637,0.635020748171649,0,0.842391534340376,0,0,0,1.18504244461122,0,0,0,0,0,0,0,0,1.39203086947621,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,43.9140848906226,0.19924798825107,1.65770349318689,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,1.41282230755522,1.82832850090172,0,0,0,0.189753732724185,1.90723894776454,0,0,0,0,0.995261931078505,0.353830258013357,1.22206028986725,0,0,0,0,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06720276974141,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0.163565394255844,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,0.313972371402056,0,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.971421986118279,0,0.198950775161368,0,0.33883824611688,0,0,0.463044948647668,5.46398901259893,0,0,0,0,0,0,0,1.2217909337381,1.09578409555081,0,0,0,0,0,0.458729283404541,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714193294391221,22.0248182540781,5.8970978581065,0,0,0,0.217716747896961,0,0.404112318087525,0.0717222053926763,0,0,0,0,0,0,0.855690109280065,0,0,2.01273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,2.36018566109342,2.68680578668049,1.70297735647684,0,0,0,0,0,0,2.21598163412751,0.601633342410425,0.651032612147555,0.895661896959697,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0.196709770113833,0.786021525498329,0.205601498999509,4.51403537554831,1.62961133316795,2.8406868344084,0,5.79334375802903,2.3568472597987,2.87994062958707,2.97884250141517,3.71464827204458,3.38154303655683,4.60426132890293,4.97430032014527,3.76744011455568,0.889719378972363,2.67540828089713,1.04535523804977,4.87230173599535,3.06576394881537,2.40539211837841,3.54227568827304,3.18565414324097,7.1619179924206,5.70271226669025,1.6563263098555,1.79181255616186,2.49861453104692,1.4206635122641,3.28451198768419,0.201606743224732,0,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0.238490624305342,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,2.07328115540772,0.432359860250884,1.38866676769018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,63.55227664433,11.8218456121156,2.80315847317372,5.90377966886842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44737618286021,2.5885704098234,2.77491650288955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657779629937804,1.3071772551245,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,7.61171413848254,5.35246044999663,2.27858874869665,4.2881719582402,2.87953591160336,2.59389324477087,3.24018862342869,5.55187623405989,0,0,0,0,0.144269212976445,0,0,0.199579371432817,27.0022571886637,0.635020748171649,0,0.842391534340376,0,0,0,1.18504244461122,0,0,0,0,0,0,0,0,1.39203086947621,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,43.9140848906226,0.19924798825107,1.65770349318689,0,0,0,0,0,0,0,0,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0.638002319463839,0.0915975934018623,0,0,1.41282230755522,1.82832850090172,0,0,0,0.189753732724185,1.90723894776454,0,0,0,0,0.995261931078505,0.353830258013357,1.22206028986725,0,0,0,0,0,0,0,0,0,0.394584402849391,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06720276974141,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0.163565394255844,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,0.313972371402056,0,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.971421986118279,0,0.198950775161368,0,0.33883824611688,0,0,0.463044948647668,5.46398901259893,0,0,0,0,0,0,0,1.2217909337381,1.09578409555081,0,0,0,0,0,0.458729283404541,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714193294391221,22.0248182540781,5.8970978581065,0,0,0,0.217716747896961,0,0.404112318087525,0.0717222053926763,0,0,0,0,0,0,0.855690109280065,0,0,2.01273793591026,0 | ||
|short_description=p1@TRDJ2 | |short_description=p1@TRDJ2 | ||
}} | }} |
Latest revision as of 05:35, 19 September 2015
Short description: | p1@TRDJ2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRDJ2_5end |
Coexpression cluster: | C3411_NK_anaplastic_acute_thymus_Natural_Whole_CD8 |
Association with transcript: | -5bp_to_ENST00000390475_5end |
EntrezGene: | NA |
HGNC: | 12258 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.69e-21 | 18 |
alpha-beta T cell | 2.69e-21 | 18 |
immature T cell | 2.69e-21 | 18 |
mature T cell | 2.69e-21 | 18 |
immature alpha-beta T cell | 2.69e-21 | 18 |
CD8-positive, alpha-beta T cell | 3.84e-16 | 11 |
T cell | 1.54e-14 | 25 |
pro-T cell | 1.54e-14 | 25 |
natural killer cell | 2.58e-10 | 3 |
pro-NK cell | 2.58e-10 | 3 |
hematopoietic stem cell | 4.39e-10 | 168 |
lymphoid lineage restricted progenitor cell | 1.98e-09 | 52 |
naive T cell | 2.72e-09 | 3 |
single nucleate cell | 2.97e-09 | 3 |
basophil | 2.97e-09 | 3 |
mononuclear cell | 2.97e-09 | 3 |
lymphocyte | 3.48e-09 | 53 |
common lymphoid progenitor | 3.48e-09 | 53 |
hematopoietic cell | 3.50e-09 | 177 |
hematopoietic oligopotent progenitor cell | 1.24e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.24e-07 | 161 |
thymocyte | 1.89e-07 | 2 |
double negative thymocyte | 1.89e-07 | 2 |
double-positive, alpha-beta thymocyte | 1.89e-07 | 2 |
DN4 thymocyte | 1.89e-07 | 2 |
DN1 thymic pro-T cell | 1.89e-07 | 2 |
DN2 thymocyte | 1.89e-07 | 2 |
DN3 thymocyte | 1.89e-07 | 2 |
immature single positive thymocyte | 1.89e-07 | 2 |
early T lineage precursor | 1.89e-07 | 2 |
leukocyte | 5.50e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
blood | 1.00e-26 | 15 |
haemolymphatic fluid | 1.00e-26 | 15 |
organism substance | 1.00e-26 | 15 |
hemopoietic organ | 3.38e-15 | 7 |
immune organ | 3.38e-15 | 7 |
thymus | 1.92e-13 | 4 |
hemolymphoid system gland | 1.92e-13 | 4 |
thymic region | 1.92e-13 | 4 |
pharyngeal gland | 1.92e-13 | 4 |
thymus primordium | 1.92e-13 | 4 |
pharyngeal epithelium | 6.13e-09 | 6 |
hematopoietic system | 5.96e-08 | 98 |
blood island | 5.96e-08 | 98 |
hemolymphoid system | 8.77e-07 | 108 |