FFCP PHASE1:Hg19::chr14:37051600..37051611,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26257 | |EntrezGene=26257 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16364 | |HGNC=16364 | ||
|TSSclassifier=strong | |||
|UniProt=O15522 | |UniProt=O15522 | ||
|association_with_transcript=174bp_to_NM_014360,uc001wtx.2_5end | |association_with_transcript=174bp_to_NM_014360,uc001wtx.2_5end | ||
|cluster_id=chr14:37051600..37051611,- | |||
|coexpression_cluster_id=C15 | |coexpression_cluster_id=C15 | ||
|description=CAGE_peak_2_at_NKX2-8_5end | |description=CAGE_peak_2_at_NKX2-8_5end | ||
|id=chr14:37051600..37051611,- | |id=chr14:37051600..37051611,- | ||
|ontology_enrichment_celltype=CL:0000066!5.87e-17!254;CL:0002076!1.38e-16!43;CL:0002368!2.09e-13!13;CL:0000082!3.21e-12!19;CL:0000223!1.50e-10!59;CL:0002202!4.36e-09!9;CL:0002632!4.36e-09!9;CL:0000076!6.89e-07!62;CL:0000077!7.52e-07!19 | |ontology_enrichment_celltype=CL:0000066!5.87e-17!254;CL:0002076!1.38e-16!43;CL:0002368!2.09e-13!13;CL:0000082!3.21e-12!19;CL:0000223!1.50e-10!59;CL:0002202!4.36e-09!9;CL:0002632!4.36e-09!9;CL:0000076!6.89e-07!62;CL:0000077!7.52e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.59e-14;13!CL:0002076;2.06e-10;42!CL:0000082;3.54e-09;19!CL:0002202;1.16e-08;9!CL:0002632;1.16e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.29e-18,253;CL:0002076,4.56e-15,42;CL:0002368,1.01e-14,13;CL:0000223,7.49e-10,58;CL:0000082,3.50e-09,19;CL:0002202,8.83e-09,9;CL:0002632,8.83e-09,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.69e-17;29!UBERON:0007123;4.22e-10;5 | |||
|ontology_enrichment_disease=DOID:305!2.95e-24!106;DOID:0050687!2.41e-21!143;DOID:162!1.50e-14!235;DOID:1749!4.86e-14!14;DOID:14566!8.90e-14!239;DOID:0050615!3.66e-09!16;DOID:1324!2.24e-08!15 | |ontology_enrichment_disease=DOID:305!2.95e-24!106;DOID:0050687!2.41e-21!143;DOID:162!1.50e-14!235;DOID:1749!4.86e-14!14;DOID:14566!8.90e-14!239;DOID:0050615!3.66e-09!16;DOID:1324!2.24e-08!15 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.19e-10;14!DOID:1324;5.87e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.79e-25,106;DOID:0050687,1.81e-17,143;DOID:162,4.07e-11,235;DOID:14566,1.09e-10,239;DOID:1749,3.93e-10,14;DOID:1324,8.47e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0000065!8.01e-24!53;UBERON:0008947!1.10e-23!38;UBERON:0003258!1.10e-23!38;UBERON:0001004!2.00e-22!72;UBERON:0000072!3.44e-19!46;UBERON:0004119!3.06e-17!169;UBERON:0000925!3.06e-17!169;UBERON:0006595!3.06e-17!169;UBERON:0001007!2.84e-16!155;UBERON:0001555!2.84e-16!155;UBERON:0007026!2.84e-16!155;UBERON:0005178!4.01e-14!34;UBERON:0002224!4.01e-14!34;UBERON:0005181!1.63e-13!35;UBERON:0000077!2.34e-13!130;UBERON:0005153!3.08e-13!37;UBERON:0002048!7.30e-13!22;UBERON:0000117!7.30e-13!22;UBERON:0000171!7.30e-13!22;UBERON:0000170!7.30e-13!22;UBERON:0005597!7.30e-13!22;UBERON:0000118!7.30e-13!22;UBERON:0001041!1.35e-12!98;UBERON:0004802!3.21e-12!19;UBERON:0000115!3.21e-12!19;UBERON:0004921!3.99e-12!129;UBERON:0004185!3.99e-12!129;UBERON:0001737!7.93e-12!9;UBERON:0000063!1.93e-10!97;UBERON:0005157!2.08e-10!51;UBERON:0007023!3.24e-10!115;UBERON:0001049!4.55e-10!57;UBERON:0005068!4.55e-10!57;UBERON:0006241!4.55e-10!57;UBERON:0007135!4.55e-10!57;UBERON:0004807!5.64e-09!28;UBERON:0000064!1.11e-08!219;UBERON:0000062!1.16e-08!511;UBERON:0005911!4.85e-08!82;UBERON:0000915!6.84e-08!52;UBERON:0002298!7.17e-08!8;UBERON:0001557!1.16e-07!19;UBERON:0001017!2.08e-07!82;UBERON:0000955!2.39e-07!69;UBERON:0006238!2.39e-07!69;UBERON:0002046!3.32e-07!5;UBERON:0004117!3.32e-07!5;UBERON:0007689!3.32e-07!5;UBERON:0007123!3.32e-07!5;UBERON:0003091!3.32e-07!5;UBERON:0002616!5.04e-07!59;UBERON:0000464!6.36e-07!104 | |ontology_enrichment_uberon=UBERON:0000065!8.01e-24!53;UBERON:0008947!1.10e-23!38;UBERON:0003258!1.10e-23!38;UBERON:0001004!2.00e-22!72;UBERON:0000072!3.44e-19!46;UBERON:0004119!3.06e-17!169;UBERON:0000925!3.06e-17!169;UBERON:0006595!3.06e-17!169;UBERON:0001007!2.84e-16!155;UBERON:0001555!2.84e-16!155;UBERON:0007026!2.84e-16!155;UBERON:0005178!4.01e-14!34;UBERON:0002224!4.01e-14!34;UBERON:0005181!1.63e-13!35;UBERON:0000077!2.34e-13!130;UBERON:0005153!3.08e-13!37;UBERON:0002048!7.30e-13!22;UBERON:0000117!7.30e-13!22;UBERON:0000171!7.30e-13!22;UBERON:0000170!7.30e-13!22;UBERON:0005597!7.30e-13!22;UBERON:0000118!7.30e-13!22;UBERON:0001041!1.35e-12!98;UBERON:0004802!3.21e-12!19;UBERON:0000115!3.21e-12!19;UBERON:0004921!3.99e-12!129;UBERON:0004185!3.99e-12!129;UBERON:0001737!7.93e-12!9;UBERON:0000063!1.93e-10!97;UBERON:0005157!2.08e-10!51;UBERON:0007023!3.24e-10!115;UBERON:0001049!4.55e-10!57;UBERON:0005068!4.55e-10!57;UBERON:0006241!4.55e-10!57;UBERON:0007135!4.55e-10!57;UBERON:0004807!5.64e-09!28;UBERON:0000064!1.11e-08!219;UBERON:0000062!1.16e-08!511;UBERON:0005911!4.85e-08!82;UBERON:0000915!6.84e-08!52;UBERON:0002298!7.17e-08!8;UBERON:0001557!1.16e-07!19;UBERON:0001017!2.08e-07!82;UBERON:0000955!2.39e-07!69;UBERON:0006238!2.39e-07!69;UBERON:0002046!3.32e-07!5;UBERON:0004117!3.32e-07!5;UBERON:0007689!3.32e-07!5;UBERON:0007123!3.32e-07!5;UBERON:0003091!3.32e-07!5;UBERON:0002616!5.04e-07!59;UBERON:0000464!6.36e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.07e-20;9!UBERON:0001557;2.07e-20;9!UBERON:0000065;5.52e-20;44!UBERON:0000072;7.81e-19;37!UBERON:0001004;1.38e-10;65!UBERON:0002046;4.22e-10;5!UBERON:0004802;3.54e-09;19!UBERON:0000115;3.54e-09;19!UBERON:0002048;9.66e-08;22!UBERON:0004807;9.66e-08;22!UBERON:0000117;9.66e-08;22!UBERON:0000171;9.66e-08;22!UBERON:0000170;9.66e-08;22!UBERON:0005178;1.23e-07;34!UBERON:0002224;1.23e-07;34!UBERON:0005181;1.35e-07;35!UBERON:0005162;1.73e-07;2!UBERON:0000122;1.73e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,7.85e-22,54;UBERON:0008947,1.30e-21,38;UBERON:0003258,1.30e-21,38;UBERON:0001737,2.12e-20,9;UBERON:0000072,1.44e-18,47;UBERON:0001004,1.46e-17,74;UBERON:0004119,2.26e-12,160;UBERON:0000925,2.26e-12,160;UBERON:0006595,2.26e-12,160;UBERON:0001557,3.51e-11,19;UBERON:0001007,3.56e-11,145;UBERON:0001555,3.56e-11,145;UBERON:0007026,3.56e-11,145;UBERON:0002046,3.87e-10,5;UBERON:0004117,3.87e-10,5;UBERON:0007689,3.87e-10,5;UBERON:0007123,3.87e-10,5;UBERON:0003091,3.87e-10,5;UBERON:0001041,4.96e-10,87;UBERON:0004802,3.50e-09,19;UBERON:0000115,3.50e-09,19;UBERON:0005178,1.03e-08,34;UBERON:0002224,1.03e-08,34;UBERON:0004921,1.06e-08,118;UBERON:0005181,2.13e-08,35;UBERON:0001048,5.10e-08,160;UBERON:0002048,9.55e-08,22;UBERON:0000117,9.55e-08,22;UBERON:0000171,9.55e-08,22;UBERON:0000170,9.55e-08,22;UBERON:0005597,9.55e-08,22;UBERON:0000118,9.55e-08,22;UBERON:0005162,1.56e-07,2;UBERON:0000122,1.56e-07,2 | |||
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| ||
|short_description=p2@NKX2-8 | |short_description=p2@NKX2-8 | ||
}} | }} |
Latest revision as of 22:44, 19 September 2015
Short description: | p2@NKX2-8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NKX2-8_5end |
Coexpression cluster: | C15_anaplastic_small_skeletal_neuroblastoma_parietal_temporal_tongue |
Association with transcript: | 174bp_to_NM_014360, uc001wtx.2_5end |
EntrezGene: | NKX2-8 |
HGNC: | 16364 |
UniProt: | O15522 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.29e-18 | 253 |
endo-epithelial cell | 4.56e-15 | 42 |
respiratory epithelial cell | 1.01e-14 | 13 |
endodermal cell | 7.49e-10 | 58 |
epithelial cell of lung | 3.50e-09 | 19 |
epithelial cell of tracheobronchial tree | 8.83e-09 | 9 |
epithelial cell of lower respiratory tract | 8.83e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
respiratory tract | 7.85e-22 | 54 |
respiratory primordium | 1.30e-21 | 38 |
endoderm of foregut | 1.30e-21 | 38 |
larynx | 2.12e-20 | 9 |
segment of respiratory tract | 1.44e-18 | 47 |
respiratory system | 1.46e-17 | 74 |
endoderm-derived structure | 2.26e-12 | 160 |
endoderm | 2.26e-12 | 160 |
presumptive endoderm | 2.26e-12 | 160 |
upper respiratory tract | 3.51e-11 | 19 |
digestive system | 3.56e-11 | 145 |
digestive tract | 3.56e-11 | 145 |
primitive gut | 3.56e-11 | 145 |
thyroid gland | 3.87e-10 | 5 |
pharyngeal pouch | 3.87e-10 | 5 |
thyroid diverticulum | 3.87e-10 | 5 |
pharyngeal pouch 2 | 3.87e-10 | 5 |
thyroid primordium | 3.87e-10 | 5 |
foregut | 4.96e-10 | 87 |
respiratory tract epithelium | 3.50e-09 | 19 |
lung epithelium | 3.50e-09 | 19 |
thoracic cavity element | 1.03e-08 | 34 |
thoracic cavity | 1.03e-08 | 34 |
subdivision of digestive tract | 1.06e-08 | 118 |
thoracic segment organ | 2.13e-08 | 35 |
primordium | 5.10e-08 | 160 |
lung | 9.55e-08 | 22 |
respiratory tube | 9.55e-08 | 22 |
respiration organ | 9.55e-08 | 22 |
pair of lungs | 9.55e-08 | 22 |
lung primordium | 9.55e-08 | 22 |
lung bud | 9.55e-08 | 22 |
multi cell component structure | 1.56e-07 | 2 |
neuron projection bundle | 1.56e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.79e-25 | 106 |
cell type cancer | 1.81e-17 | 143 |
cancer | 4.07e-11 | 235 |
disease of cellular proliferation | 1.09e-10 | 239 |
squamous cell carcinoma | 3.93e-10 | 14 |
lung cancer | 8.47e-07 | 15 |