FFCP PHASE1:Hg19::chr17:53588767..53588787,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:53588767..53588787,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_at_chr17:53588767..53588787,- | |description=CAGE_peak_at_chr17:53588767..53588787,- | ||
|id=chr17:53588767..53588787,- | |id=chr17:53588767..53588787,- | ||
|ontology_enrichment_celltype=CL:0000243!8.11e-07!15;CL:0000125!8.11e-07!15;CL:0000030!8.11e-07!15;CL:0000339!8.11e-07!15 | |ontology_enrichment_celltype=CL:0000243!8.11e-07!15;CL:0000125!8.11e-07!15;CL:0000030!8.11e-07!15;CL:0000339!8.11e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000243;1.17e-07;15!CL:0000125;1.17e-07;15!CL:0000095;6.01e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.17e-07,15;CL:0000125,1.17e-07,15;CL:0000030,1.17e-07,15;CL:0000339,1.17e-07,15;CL:0000095,6.01e-07,17;CL:0000123,6.01e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.64e-38;3!UBERON:0006238;2.55e-11;10!CL:0000339;1.17e-07;15 | |||
|ontology_enrichment_disease=DOID:3093!2.77e-09!11;DOID:5409!1.69e-07!4 | |ontology_enrichment_disease=DOID:3093!2.77e-09!11;DOID:5409!1.69e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:3093;1.85e-10;11!DOID:5409;2.26e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.85e-10,11;DOID:5409,2.26e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!8.82e-51!2;UBERON:0002757!8.82e-51!2;UBERON:0010134!8.82e-51!2;UBERON:0002784!8.82e-51!2;UBERON:0005408!8.82e-51!2;UBERON:0001899!8.82e-51!2;UBERON:0003296!5.23e-26!4;UBERON:0010133!5.23e-26!4;UBERON:0000966!9.93e-21!5;UBERON:0005388!9.93e-21!5;UBERON:0001802!9.93e-21!5;UBERON:0001894!2.47e-15!7;UBERON:0006222!2.47e-15!7;UBERON:0002360!1.55e-13!2;UBERON:0000094!1.55e-13!2;UBERON:0007645!1.55e-13!2;UBERON:0000970!8.58e-12!20;UBERON:0002104!2.90e-11!21;UBERON:0000020!2.41e-10!23;UBERON:0005743!2.88e-10!86;UBERON:0001032!6.10e-10!24;UBERON:0004456!6.10e-10!24;UBERON:0000073!2.56e-09!94;UBERON:0001016!2.56e-09!94;UBERON:0001017!1.23e-07!82;UBERON:0003075!2.32e-07!86;UBERON:0007284!2.32e-07!86;UBERON:0002346!4.83e-07!90;UBERON:0003056!7.52e-07!61 | |ontology_enrichment_uberon=UBERON:0001905!8.82e-51!2;UBERON:0002757!8.82e-51!2;UBERON:0010134!8.82e-51!2;UBERON:0002784!8.82e-51!2;UBERON:0005408!8.82e-51!2;UBERON:0001899!8.82e-51!2;UBERON:0003296!5.23e-26!4;UBERON:0010133!5.23e-26!4;UBERON:0000966!9.93e-21!5;UBERON:0005388!9.93e-21!5;UBERON:0001802!9.93e-21!5;UBERON:0001894!2.47e-15!7;UBERON:0006222!2.47e-15!7;UBERON:0002360!1.55e-13!2;UBERON:0000094!1.55e-13!2;UBERON:0007645!1.55e-13!2;UBERON:0000970!8.58e-12!20;UBERON:0002104!2.90e-11!21;UBERON:0000020!2.41e-10!23;UBERON:0005743!2.88e-10!86;UBERON:0001032!6.10e-10!24;UBERON:0004456!6.10e-10!24;UBERON:0000073!2.56e-09!94;UBERON:0001016!2.56e-09!94;UBERON:0001017!1.23e-07!82;UBERON:0003075!2.32e-07!86;UBERON:0007284!2.32e-07!86;UBERON:0002346!4.83e-07!90;UBERON:0003056!7.52e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0000966;1.81e-23;5!UBERON:0005388;1.81e-23;5!UBERON:0001802;1.81e-23;5!UBERON:0001894;2.46e-17;7!UBERON:0000970;2.28e-13;20!UBERON:0002104;9.09e-13;21!UBERON:0000020;1.01e-11;23!UBERON:0001032;2.90e-11;24!UBERON:0004456;2.90e-11;24!UBERON:0000019;6.57e-07;19!UBERON:0000047;6.57e-07;19!UBERON:0004088;6.57e-07;19!UBERON:0010230;6.57e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.13e-57,2;UBERON:0002757,1.13e-57,2;UBERON:0010134,1.13e-57,2;UBERON:0005408,1.13e-57,2;UBERON:0001899,1.13e-57,2;UBERON:0003296,1.78e-29,4;UBERON:0010133,1.78e-29,4;UBERON:0002784,1.78e-29,4;UBERON:0000966,9.49e-20,6;UBERON:0005388,9.49e-20,6;UBERON:0001802,9.49e-20,6;UBERON:0001894,2.46e-17,7;UBERON:0006222,2.46e-17,7;UBERON:0000970,9.09e-13,21;UBERON:0002104,9.09e-13,21;UBERON:0000020,2.90e-11,24;UBERON:0001032,2.90e-11,24;UBERON:0004456,2.90e-11,24;UBERON:0003056,8.15e-08,61;UBERON:0000955,5.48e-07,68;UBERON:0006238,5.48e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58186518546373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.05578038174777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8923715992532,52.4602606661365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93053831124291,6.47855808104179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39762066981717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58186518546373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.05578038174777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8923715992532,52.4602606661365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93053831124291,6.47855808104179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.39762066981717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:53588767..53588787,- | |short_description=p@chr17:53588767..53588787,- | ||
}} | }} |
Latest revision as of 19:02, 25 July 2015
Short description: | p@chr17:53588767..53588787, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:53588767..53588787, - |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.17e-07 | 15 |
glial cell | 1.17e-07 | 15 |
glioblast | 1.17e-07 | 15 |
glioblast (sensu Vertebrata) | 1.17e-07 | 15 |
neuron associated cell | 6.01e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.01e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.13e-57 | 2 |
regional part of epithalamus | 1.13e-57 | 2 |
secretory circumventricular organ | 1.13e-57 | 2 |
circumventricular organ | 1.13e-57 | 2 |
epithalamus | 1.13e-57 | 2 |
gland of diencephalon | 1.78e-29 | 4 |
neuroendocrine gland | 1.78e-29 | 4 |
regional part of diencephalon | 1.78e-29 | 4 |
retina | 9.49e-20 | 6 |
photoreceptor array | 9.49e-20 | 6 |
posterior segment of eyeball | 9.49e-20 | 6 |
diencephalon | 2.46e-17 | 7 |
future diencephalon | 2.46e-17 | 7 |
eye | 9.09e-13 | 21 |
visual system | 9.09e-13 | 21 |
sense organ | 2.90e-11 | 24 |
sensory system | 2.90e-11 | 24 |
entire sense organ system | 2.90e-11 | 24 |
pre-chordal neural plate | 8.15e-08 | 61 |
brain | 5.48e-07 | 68 |
future brain | 5.48e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.85e-10 | 11 |
lung small cell carcinoma | 2.26e-08 | 4 |