FFCP PHASE1:Hg19::chr19:54053807..54053810,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:54053807..54053810,+ | |||
|coexpression_cluster_id=C437 | |coexpression_cluster_id=C437 | ||
|description=CAGE_peak_at_chr19:54053807..54053810,+ | |description=CAGE_peak_at_chr19:54053807..54053810,+ | ||
|id=chr19:54053807..54053810,+ | |id=chr19:54053807..54053810,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.32e-09!140;CL:0002087!2.46e-08!119;CL:0002031!6.86e-08!124;CL:0000037!2.38e-07!172;CL:0000566!2.38e-07!172;CL:0000624!6.31e-07!6 | |ontology_enrichment_celltype=CL:0000738!1.32e-09!140;CL:0002087!2.46e-08!119;CL:0002031!6.86e-08!124;CL:0000037!2.38e-07!172;CL:0000566!2.38e-07!172;CL:0000624!6.31e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000624;9.63e-21;6!CL:0000791;2.41e-14;18!CL:0000789;2.41e-14;18!CL:0002419;2.41e-14;18!CL:0000226;2.38e-11;3!CL:0000842;2.38e-11;3!CL:0000623;3.41e-11;3!CL:0000898;9.67e-11;3!CL:0000084;8.07e-10;25!CL:0000542;1.10e-08;53!CL:0000815;5.65e-08;2!CL:0000792;5.65e-08;2!CL:0002677;5.65e-08;2!CL:0000097;4.61e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,8.50e-21,6;CL:0000738,5.52e-16,136;CL:0000791,2.37e-14,18;CL:0000789,2.37e-14,18;CL:0002420,2.37e-14,18;CL:0002419,2.37e-14,18;CL:0000790,2.37e-14,18;CL:0000838,2.27e-13,52;CL:0002087,4.02e-13,115;CL:0000542,4.82e-13,53;CL:0000051,4.82e-13,53;CL:0002031,2.37e-12,120;CL:0000037,1.71e-11,168;CL:0000226,2.56e-11,3;CL:0000842,2.56e-11,3;CL:0000623,3.26e-11,3;CL:0000825,3.26e-11,3;CL:0000898,8.65e-11,3;CL:0000988,1.57e-10,177;CL:0000084,7.98e-10,25;CL:0000827,7.98e-10,25;CL:0002032,2.55e-09,161;CL:0000837,2.55e-09,161;CL:0000815,4.46e-08,2;CL:0000792,4.46e-08,2;CL:0002677,4.46e-08,2;CL:0000097,4.63e-07,5;CL:0002028,4.63e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000790;2.41e-14;18!CL:0000051;1.10e-08;53!UBERON:0005062;1.33e-07;4!UBERON:0007284;1.33e-07;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.56e-11!115;UBERON:0001049!1.25e-07!57;UBERON:0005068!1.25e-07!57;UBERON:0006241!1.25e-07!57;UBERON:0007135!1.25e-07!57;UBERON:0003080!6.98e-07!42 | |ontology_enrichment_uberon=UBERON:0007023!1.56e-11!115;UBERON:0001049!1.25e-07!57;UBERON:0005068!1.25e-07!57;UBERON:0006241!1.25e-07!57;UBERON:0007135!1.25e-07!57;UBERON:0003080!6.98e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0002133;3.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,2.80e-07,2 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0.0764134057479513,0.0821005894499457,0.0787107813136792,0.393364276848904,1.15148819429164,0,0,0,0,0.0774672005803016,0,0,0,1.00272223735071,1.51907609501096,0.447830948479849,0,1.03030227053675,0,0,0,0.464858073811369,0.411167888021826,0.619412741790207,0,0.512321413058201,0.236482229888585,1.03423704220986,0.645484683583826,0,0.564727018627814,0.818718450173537,0.224723484445085,0,0.320929027076094,1.27867425159808,0.329851300186716,0,0,0,0,0,0.502497330513487,0,0,0.605399502633369,0.368277635987565,0,0,0.425208599930087,0.419317291016752,0.22465726229299,0.450530678524519,0,0.285012743741249,0,0,0,1.09227722252426,0,0,0.400395987036012,0,0,0,4.55370375287559,6.45960908308033,8.02773779062981,1.32171328579026,0,0.263384084775077,5.90129310341499,5.10913991573914,8.01845846098086,0,3.91106719960308,2.36723902867367,1.94826728407911,0,2.94605907474837,0.664601683750863,1.35401931882508,0.128091319725675,0,0.164437904603676,0.276350017785848,0.289803085735052,1.18629250529648,1.87278579662799,2.09071047609954,0,1.14966148080576,1.37450978193052,1.01207876807801,0,0.651083453856419,0,0,0,0,0,0,5.04016858061831,3.4767225451856,5.35850294366356,0,0,0,0,0,0.289693037921647,0,0.486634870302636,0.0945348171640679,0,0.175669571386252,0.196468613246569,0,0,0,0.348259474598534,0,1.66943437013739,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0.515281080091258,0,0,0.0974370051611986,0.252433774244115,0,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0.132529768321485,0,0,0.252320850875628,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,2.36315962672562,0.441463099414651,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0.16798212819886,0,0,0,0,0,0,4.14656231081544,6.77363781059719,3.66103056936502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0.179060963239896,0,2.36436912242313,3.88129634747131,3.85029108839245,0,1.30139853857622,0,0,0,0,2.99161459204025,0,0,0,0,0,0.356857977594324,0.157702415033935,0,0,0,0,0,0,0,0,0,3.10152039184331,2.37285620900479,6.19019835259977,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0.219259876645935,0,0,0,0,0.103041011647722,0.183138929636687,0.082509499920588,0,0,0,0.096670718292122,0,0.307007349452259,0.413509717453592,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,1.58510321173008,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,1.13929437434833,0.714695326373367,0,0,0,0.79312517629427,0.106824071127473,0,0,0.185803175125719,0,0.142283686696828,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.33307196799782,0,0.18714054040822,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,2.19172787076177,0.828851746593443,0,0,0.123084805461069,0,0,0,0.511572370226872,0.197286811273867,0,0,0,0.371072392647405,0,0,0.0874599999961957,0.724999575434793,0,0,0.945550727071745,0.344743373241465,0.291604613383254,0,0.885741385813839,0.241192877250816,0,0.774054819518572,0.295547618953547,0.219385397153973,0,0.139423744278603,0.384751292518985,0,0.23056390438806,0,0.217294743844016,0,0,1.06606955203727,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0.269604531922708,2.40773294189637,0.234264445725339,0,0,0.242780379534093,0,1.20990716048664,0,0.189559738885464,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0.19351266257817,0,0.0821154570532092,0.193978032976839,0.0882561266915003,0.677942222341597,0,0.19871461170299,0.253243183823515,0.195551382734803,0,1.06726497369676,0.19980960958213,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0.410716136675979,0,0,0.262887354279314,1.11712960508902,0.229160424011684,1.43574604915363,0.199679000498991,0,0,0.134366944973453,0,1.16495949527454,0,0,0.13480708770837,0,0,0,0.272406812223151,0.160753148465019,0,0,0.674921674654501,0,0.364497339948148,0,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0,0,0.258565912723101,0.26446520348538,0.513260513652988,0,0.320362237703084,0.471612915298998,0.828478110694391,0,0,0,0,0,0,0,0,0.157054096250234,0.886068179966986,0.122026264901963,0.3755727921195,0,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453692771289717,0,0,0,0,0,0.414706207840855,0,0.521745061811734,0,0,0,0,0.322231671127465,0,0.398095888698616,0,0,0,0,0,0.214441591374926,0,0,0.231522474323834,0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| ||
|short_description=p@chr19:54053807..54053810,+ | |short_description=p@chr19:54053807..54053810,+ | ||
}} | }} |
Latest revision as of 16:59, 27 July 2015
Short description: | p@chr19:54053807..54053810, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54053807..54053810, + |
Coexpression cluster: | C437_CD4_CD8_Natural_CD19_thyroid_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 8.50e-21 | 6 |
leukocyte | 5.52e-16 | 136 |
mature alpha-beta T cell | 2.37e-14 | 18 |
alpha-beta T cell | 2.37e-14 | 18 |
immature T cell | 2.37e-14 | 18 |
mature T cell | 2.37e-14 | 18 |
immature alpha-beta T cell | 2.37e-14 | 18 |
lymphoid lineage restricted progenitor cell | 2.27e-13 | 52 |
nongranular leukocyte | 4.02e-13 | 115 |
lymphocyte | 4.82e-13 | 53 |
common lymphoid progenitor | 4.82e-13 | 53 |
hematopoietic lineage restricted progenitor cell | 2.37e-12 | 120 |
hematopoietic stem cell | 1.71e-11 | 168 |
single nucleate cell | 2.56e-11 | 3 |
mononuclear cell | 2.56e-11 | 3 |
natural killer cell | 3.26e-11 | 3 |
pro-NK cell | 3.26e-11 | 3 |
naive T cell | 8.65e-11 | 3 |
hematopoietic cell | 1.57e-10 | 177 |
T cell | 7.98e-10 | 25 |
pro-T cell | 7.98e-10 | 25 |
hematopoietic oligopotent progenitor cell | 2.55e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.55e-09 | 161 |
regulatory T cell | 4.46e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.46e-08 | 2 |
naive regulatory T cell | 4.46e-08 | 2 |
mast cell | 4.63e-07 | 5 |
basophil mast progenitor cell | 4.63e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
atrioventricular valve | 2.80e-07 | 2 |