FFCP PHASE1:Hg19::chr3:100947980..100947983,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:100947980..100947983,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_at_chr3:100947980..100947983,- | |description=CAGE_peak_at_chr3:100947980..100947983,- | ||
|id=chr3:100947980..100947983,- | |id=chr3:100947980..100947983,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000243;9.07e-09;15!CL:0000125;9.07e-09;15!CL:0000095;6.04e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,8.55e-09,15;CL:0000125,8.55e-09,15;CL:0000030,8.55e-09,15;CL:0000339,8.55e-09,15;CL:0000095,5.73e-08,17;CL:0000123,5.73e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0006238;5.26e-13;10!UBERON:0003056;2.19e-12;3!CL:0000339;9.07e-09;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;5.22e-12;11!DOID:5409;1.57e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,4.80e-12,11;DOID:5409,1.57e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0005743!7.61e-10!86;UBERON:0000073!1.85e-09!94;UBERON:0001016!1.85e-09!94;UBERON:0001017!2.57e-09!82;UBERON:0000955!3.18e-09!69;UBERON:0006238!3.18e-09!69;UBERON:0002346!2.11e-08!90;UBERON:0001905!4.81e-08!2;UBERON:0002757!4.81e-08!2;UBERON:0010134!4.81e-08!2;UBERON:0002784!4.81e-08!2;UBERON:0005408!4.81e-08!2;UBERON:0001899!4.81e-08!2;UBERON:0003075!6.16e-08!86;UBERON:0007284!6.16e-08!86;UBERON:0003056!1.25e-07!61 | |ontology_enrichment_uberon=UBERON:0005743!7.61e-10!86;UBERON:0000073!1.85e-09!94;UBERON:0001016!1.85e-09!94;UBERON:0001017!2.57e-09!82;UBERON:0000955!3.18e-09!69;UBERON:0006238!3.18e-09!69;UBERON:0002346!2.11e-08!90;UBERON:0001905!4.81e-08!2;UBERON:0002757!4.81e-08!2;UBERON:0010134!4.81e-08!2;UBERON:0002784!4.81e-08!2;UBERON:0005408!4.81e-08!2;UBERON:0001899!4.81e-08!2;UBERON:0003075!6.16e-08!86;UBERON:0007284!6.16e-08!86;UBERON:0003056!1.25e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;8.77e-67;2!UBERON:0002757;8.77e-67;2!UBERON:0010134;8.77e-67;2!UBERON:0005408;8.77e-67;2!UBERON:0001899;8.77e-67;2!UBERON:0003296;4.65e-34;4!UBERON:0010133;4.65e-34;4!UBERON:0002784;4.65e-34;4!UBERON:0001894;5.61e-20;7!UBERON:0000966;5.92e-08;5!UBERON:0005388;5.92e-08;5!UBERON:0001802;5.92e-08;5!UBERON:0000970;1.35e-07;20!UBERON:0002104;2.82e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.04e-66,2;UBERON:0002757,1.04e-66,2;UBERON:0010134,1.04e-66,2;UBERON:0005408,1.04e-66,2;UBERON:0001899,1.04e-66,2;UBERON:0003296,5.06e-34,4;UBERON:0010133,5.06e-34,4;UBERON:0002784,5.06e-34,4;UBERON:0001894,5.89e-20,7;UBERON:0006222,5.89e-20,7;UBERON:0000955,3.85e-08,68;UBERON:0006238,3.85e-08,68;UBERON:0000970,2.86e-07,21;UBERON:0002104,2.86e-07,21;UBERON:0001017,6.13e-07,81;UBERON:0000966,7.58e-07,6;UBERON:0005388,7.58e-07,6;UBERON:0001802,7.58e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.411202997999018,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0.256686072559497,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.307007349452259,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0.281338832821026,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0.171986032471617,0,0,0,0,0,1.12990370390266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,1.93688088910723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0.247871528518004,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,3.21421101526972,14.4602000554094,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0.280272163313789,0,0,0,0.428859265059938,3.47629945811999,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42922671769058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.411202997999018,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0.256686072559497,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.307007349452259,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0.281338832821026,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317873157960757,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0.171986032471617,0,0,0,0,0,1.12990370390266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,1.93688088910723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0.247871528518004,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,3.21421101526972,14.4602000554094,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0.280272163313789,0,0,0,0.428859265059938,3.47629945811999,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42922671769058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr3:100947980..100947983,- | |short_description=p@chr3:100947980..100947983,- | ||
}} | }} |
Latest revision as of 13:41, 29 July 2015
Short description: | p@chr3:100947980..100947983, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:100947980..100947983, - |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 8.55e-09 | 15 |
glial cell | 8.55e-09 | 15 |
glioblast | 8.55e-09 | 15 |
glioblast (sensu Vertebrata) | 8.55e-09 | 15 |
neuron associated cell | 5.73e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.73e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.04e-66 | 2 |
regional part of epithalamus | 1.04e-66 | 2 |
secretory circumventricular organ | 1.04e-66 | 2 |
circumventricular organ | 1.04e-66 | 2 |
epithalamus | 1.04e-66 | 2 |
gland of diencephalon | 5.06e-34 | 4 |
neuroendocrine gland | 5.06e-34 | 4 |
regional part of diencephalon | 5.06e-34 | 4 |
diencephalon | 5.89e-20 | 7 |
future diencephalon | 5.89e-20 | 7 |
brain | 3.85e-08 | 68 |
future brain | 3.85e-08 | 68 |
eye | 2.86e-07 | 21 |
visual system | 2.86e-07 | 21 |
central nervous system | 6.13e-07 | 81 |
retina | 7.58e-07 | 6 |
photoreceptor array | 7.58e-07 | 6 |
posterior segment of eyeball | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 4.80e-12 | 11 |
lung small cell carcinoma | 1.57e-09 | 4 |