FFCP PHASE1:Hg19::chr3:186756449..186756466,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:186756449..186756466,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_at_chr3:186756449..186756466,+ | |description=CAGE_peak_at_chr3:186756449..186756466,+ | ||
|id=chr3:186756449..186756466,+ | |id=chr3:186756449..186756466,+ | ||
|ontology_enrichment_celltype=CL:0000181!4.15e-26!12;CL:0000417!4.15e-26!12;CL:0000668!4.15e-26!12;CL:0000414!4.15e-26!12;CL:0000412!4.15e-26!12;CL:0000182!4.15e-26!12;CL:0000223!6.12e-10!59 | |ontology_enrichment_celltype=CL:0000181!4.15e-26!12;CL:0000417!4.15e-26!12;CL:0000668!4.15e-26!12;CL:0000414!4.15e-26!12;CL:0000412!4.15e-26!12;CL:0000182!4.15e-26!12;CL:0000223!6.12e-10!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.70e-32;12!CL:0002563;6.09e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.82e-32,12;CL:0000223,5.82e-15,58;CL:0002563,5.74e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.25e-26;11!UBERON:0009497;6.02e-22;13!UBERON:0003104;4.84e-12;31!CL:0000223;5.78e-10;58!UBERON:0001041;3.00e-09;30!UBERON:0001045;4.68e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!2.27e-29!23;UBERON:0009497!9.10e-27!25;UBERON:0000015!9.10e-27!25;UBERON:0002423!9.10e-27!25;UBERON:0006235!9.10e-27!25;UBERON:0004161!9.10e-27!25;UBERON:0008835!6.81e-26!22;UBERON:0003894!6.81e-26!22;UBERON:0004921!7.22e-26!129;UBERON:0004185!7.22e-26!129;UBERON:0009856!1.09e-25!26;UBERON:0002107!2.99e-25!19;UBERON:0006925!2.99e-25!19;UBERON:0008836!2.99e-25!19;UBERON:0007499!1.62e-22!25;UBERON:0001007!3.32e-22!155;UBERON:0001555!3.32e-22!155;UBERON:0007026!3.32e-22!155;UBERON:0005057!1.39e-21!26;UBERON:0003929!3.07e-20!54;UBERON:0004119!7.72e-20!169;UBERON:0000925!7.72e-20!169;UBERON:0006595!7.72e-20!169;UBERON:0000077!1.95e-16!130;UBERON:0000059!6.67e-16!11;UBERON:0005172!8.43e-15!55;UBERON:0005173!8.43e-15!55;UBERON:0002365!1.00e-14!31;UBERON:0002330!1.00e-14!31;UBERON:0005409!1.04e-14!35;UBERON:0005911!7.97e-14!82;UBERON:0001155!9.07e-14!9;UBERON:0000160!4.58e-13!27;UBERON:0002417!4.77e-13!61;UBERON:0000916!4.77e-13!61;UBERON:0002368!8.02e-13!35;UBERON:0001041!2.52e-12!98;UBERON:0002530!6.63e-10!59;UBERON:0000949!1.50e-09!45;UBERON:0004907!1.53e-09!5;UBERON:0000481!2.37e-09!347;UBERON:0005177!2.34e-08!107;UBERON:0003104!3.38e-08!238;UBERON:0009142!3.38e-08!238;UBERON:0009569!9.76e-08!113 | |ontology_enrichment_uberon=UBERON:0009854!2.27e-29!23;UBERON:0009497!9.10e-27!25;UBERON:0000015!9.10e-27!25;UBERON:0002423!9.10e-27!25;UBERON:0006235!9.10e-27!25;UBERON:0004161!9.10e-27!25;UBERON:0008835!6.81e-26!22;UBERON:0003894!6.81e-26!22;UBERON:0004921!7.22e-26!129;UBERON:0004185!7.22e-26!129;UBERON:0009856!1.09e-25!26;UBERON:0002107!2.99e-25!19;UBERON:0006925!2.99e-25!19;UBERON:0008836!2.99e-25!19;UBERON:0007499!1.62e-22!25;UBERON:0001007!3.32e-22!155;UBERON:0001555!3.32e-22!155;UBERON:0007026!3.32e-22!155;UBERON:0005057!1.39e-21!26;UBERON:0003929!3.07e-20!54;UBERON:0004119!7.72e-20!169;UBERON:0000925!7.72e-20!169;UBERON:0006595!7.72e-20!169;UBERON:0000077!1.95e-16!130;UBERON:0000059!6.67e-16!11;UBERON:0005172!8.43e-15!55;UBERON:0005173!8.43e-15!55;UBERON:0002365!1.00e-14!31;UBERON:0002330!1.00e-14!31;UBERON:0005409!1.04e-14!35;UBERON:0005911!7.97e-14!82;UBERON:0001155!9.07e-14!9;UBERON:0000160!4.58e-13!27;UBERON:0002417!4.77e-13!61;UBERON:0000916!4.77e-13!61;UBERON:0002368!8.02e-13!35;UBERON:0001041!2.52e-12!98;UBERON:0002530!6.63e-10!59;UBERON:0000949!1.50e-09!45;UBERON:0004907!1.53e-09!5;UBERON:0000481!2.37e-09!347;UBERON:0005177!2.34e-08!107;UBERON:0003104!3.38e-08!238;UBERON:0009142!3.38e-08!238;UBERON:0009569!9.76e-08!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.57e-34;17!UBERON:0002107;1.65e-33;19!UBERON:0006925;1.65e-33;19!UBERON:0005409;8.81e-33;22!UBERON:0000059;3.52e-25;11!UBERON:0002423;3.67e-25;25!UBERON:0001155;1.23e-21;9!UBERON:0004921;8.75e-20;33!UBERON:0002365;1.89e-19;31!UBERON:0002330;1.89e-19;31!UBERON:0001007;3.89e-17;81!UBERON:0002368;4.60e-17;33!UBERON:0004907;1.42e-14;5!UBERON:0000949;3.04e-12;43!UBERON:0001154;4.68e-09;1!UBERON:0001153;4.68e-09;1!UBERON:0009854;4.68e-09;1!UBERON:0001242;6.09e-09;4!UBERON:0001262;6.09e-09;4!UBERON:0004786;6.09e-09;4!UBERON:0004808;6.09e-09;4!UBERON:0001277;6.09e-09;4!UBERON:0001052;9.62e-09;4!UBERON:0002530;9.32e-08;57!UBERON:0005172;1.53e-07;52!UBERON:0005173;1.53e-07;52!UBERON:0001555;2.54e-07;54!UBERON:0002108;2.59e-07;4!UBERON:0002417;5.02e-07;58!UBERON:0000916;5.02e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.37e-34,17;UBERON:0009854,1.09e-33,23;UBERON:0002107,1.75e-33,19;UBERON:0006925,1.75e-33,19;UBERON:0008836,1.75e-33,19;UBERON:0009856,1.26e-29,26;UBERON:0005409,7.81e-29,25;UBERON:0008835,9.57e-29,22;UBERON:0003894,9.57e-29,22;UBERON:0000059,3.30e-25,11;UBERON:0007499,3.84e-25,25;UBERON:0009497,3.84e-25,25;UBERON:0000015,3.84e-25,25;UBERON:0002423,3.84e-25,25;UBERON:0006235,3.84e-25,25;UBERON:0004161,3.84e-25,25;UBERON:0004921,1.64e-23,118;UBERON:0001155,1.18e-21,9;UBERON:0002365,5.04e-20,31;UBERON:0002330,5.04e-20,31;UBERON:0003929,1.68e-19,54;UBERON:0001007,1.58e-18,145;UBERON:0001555,1.58e-18,145;UBERON:0007026,1.58e-18,145;UBERON:0002368,1.39e-17,35;UBERON:0004119,1.78e-16,160;UBERON:0000925,1.78e-16,160;UBERON:0006595,1.78e-16,160;UBERON:0004907,1.26e-14,5;UBERON:0011216,2.03e-13,223;UBERON:0000949,2.22e-13,45;UBERON:0002530,3.63e-12,59;UBERON:0005911,3.92e-12,82;UBERON:0005172,6.34e-11,54;UBERON:0005173,6.34e-11,54;UBERON:0002417,1.07e-09,60;UBERON:0000916,1.07e-09,60;UBERON:0001154,4.50e-09,1;UBERON:0001153,4.50e-09,1;UBERON:0001045,4.50e-09,1;UBERON:0001242,5.74e-09,4;UBERON:0001262,5.74e-09,4;UBERON:0004786,5.74e-09,4;UBERON:0004808,5.74e-09,4;UBERON:0001277,5.74e-09,4;UBERON:0001052,8.89e-09,4;UBERON:0001041,8.92e-08,87;UBERON:0002108,2.59e-07,4;UBERON:0001046,9.73e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,65.912618107352,82.5574862009206,56.1250411347334,0,14.0206819939149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7094131048652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,2.51932747854276,0,0,0,0,0.179021174675609,0,0,0,0,1.93866549219044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83758992864123,0,2.98578579323551,1.23840590304675,12.2206028986725,0,0,0,0,0,0,0.182454789215666,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426905989478705,0,8.06906336062993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,8.58736687148738,8.90091270516598,7.95361817479382,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,38.3966852236576,29.1515155606887,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,2.73947616152849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55678681511872,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,4.7612415646386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,65.912618107352,82.5574862009206,56.1250411347334,0,14.0206819939149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7094131048652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,2.51932747854276,0,0,0,0,0.179021174675609,0,0,0,0,1.93866549219044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83758992864123,0,2.98578579323551,1.23840590304675,12.2206028986725,0,0,0,0,0,0,0.182454789215666,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426905989478705,0,8.06906336062993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,8.58736687148738,8.90091270516598,7.95361817479382,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,38.3966852236576,29.1515155606887,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,2.73947616152849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55678681511872,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,0,0,0,0,0,0,4.7612415646386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:186756449..186756466,+ | |short_description=p@chr3:186756449..186756466,+ | ||
}} | }} |
Latest revision as of 19:10, 29 July 2015
Short description: | p@chr3:186756449..186756466, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:186756449..186756466, + |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.82e-32 | 12 |
endodermal cell | 5.82e-15 | 58 |
intestinal epithelial cell | 5.74e-09 | 4 |