FFCP PHASE1:Hg19::chr19:38806561..38806607,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:38806561..38806607,-
|short_description=p1@YIF1B
|description=CAGE_peak_1_at_YIF1B_5end
|association_with_transcript=0bp_to_ENST00000337679,ENST0000033941...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=90522 | |EntrezGene=90522 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30511 | |HGNC=30511 | ||
|TSSclassifier=strong | |||
|UniProt=Q5BJH7,Q9H5F7 | |UniProt=Q5BJH7,Q9H5F7 | ||
|association_with_transcript=0bp_to_ENST00000337679,ENST00000339413,NM_001039672,NM_001039673,NM_001145463,uc002ohy.2,uc002ohz.2,uc002oia.2,uc002oib.2_5end | |||
|cluster_id=chr19:38806561..38806607,- | |||
|coexpression_cluster_id=C1147 | |||
|description=CAGE_peak_1_at_YIF1B_5end | |||
|id=chr19:38806561..38806607,- | |||
|ontology_enrichment_celltype=CL:0000055!6.14e-29!180;CL:0000144!5.25e-22!625;CL:0000222!6.61e-22!119;CL:0002371!6.38e-20!591;CL:0000183!1.38e-17!59;CL:0002321!1.75e-16!248;CL:0000220!2.29e-16!246;CL:0000680!1.66e-15!57;CL:0000056!1.66e-15!57;CL:0000355!1.66e-15!57;CL:0000393!4.88e-15!60;CL:0000211!4.88e-15!60;CL:0000187!7.43e-15!54;CL:0000548!2.22e-14!679;CL:0000004!2.22e-14!679;CL:0000255!2.22e-14!679;CL:0000012!3.49e-14!682;CL:0000192!1.44e-13!42;CL:0000514!1.44e-13!42;CL:0000359!5.81e-11!32;CL:0000115!1.62e-10!35;CL:0000057!2.05e-10!75;CL:0002078!4.39e-10!44;CL:1000449!6.62e-08!16;CL:0000003!9.93e-08!722;CL:1000497!1.85e-07!18;CL:0002518!1.85e-07!18;CL:0002139!7.10e-07!24;CL:0000213!9.15e-07!57;CL:0000215!9.15e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.36e-10;32!CL:0000192;7.18e-10;43!CL:0000115;2.64e-09;36!CL:0000187;8.27e-09;55!CL:1000449;4.53e-08;15!CL:0000393;7.07e-08;61!CL:0000211;7.07e-08;61!CL:1000497;1.40e-07;17!CL:0002518;1.40e-07;17!CL:0002078;2.80e-07;45!CL:0002139;7.04e-07;24!CL:0002681;7.40e-07;12!CL:0002584;7.40e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.11e-22,121;CL:0002321,6.41e-17,250;CL:0000680,1.74e-15,58;CL:0000056,1.74e-15,58;CL:0000355,1.74e-15,58;CL:0000393,4.99e-15,61;CL:0000211,4.99e-15,61;CL:0000187,7.82e-15,55;CL:0000192,1.61e-13,43;CL:0000514,1.61e-13,43;CL:0000115,5.53e-11,36;CL:0000359,5.81e-11,32;CL:0000057,7.89e-11,76;CL:0002078,1.60e-10,45;CL:1000449,4.78e-08,15;CL:1000497,1.49e-07,17;CL:0002518,1.49e-07,17;CL:0000213,4.07e-07,58;CL:0000215,4.07e-07,58;CL:0002139,7.10e-07,24;CL:0002681,7.68e-07,12;CL:0002584,7.68e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;7.18e-10;43!CL:0000355;1.13e-08;58!CL:0000222;6.06e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!2.59e-19!79;UBERON:0007798!2.59e-19!79;UBERON:0000055!8.79e-16!69;UBERON:0000914!2.49e-14!83;UBERON:0002329!2.49e-14!83;UBERON:0003077!2.49e-14!83;UBERON:0003059!2.49e-14!83;UBERON:0007282!2.49e-14!83;UBERON:0009618!2.49e-14!83;UBERON:0007285!2.49e-14!83;UBERON:0004290!2.66e-14!70;UBERON:0004872!5.12e-14!84;UBERON:0003914!9.01e-14!118;UBERON:0001981!2.04e-13!60;UBERON:0007500!2.04e-13!60;UBERON:0004537!2.04e-13!60;UBERON:0006965!2.04e-13!60;UBERON:0004535!2.08e-13!110;UBERON:0001134!2.16e-13!61;UBERON:0002036!2.16e-13!61;UBERON:0003082!2.16e-13!61;UBERON:0001009!5.23e-13!113;UBERON:0005256!6.98e-13!143;UBERON:0000486!2.29e-12!82;UBERON:0000119!6.13e-12!312;UBERON:0000490!7.74e-12!138;UBERON:0002385!9.22e-12!63;UBERON:0001015!9.22e-12!63;UBERON:0000383!9.22e-12!63;UBERON:0001637!1.52e-11!42;UBERON:0003509!1.52e-11!42;UBERON:0004572!1.52e-11!42;UBERON:0002100!2.90e-11!216;UBERON:0000483!3.08e-11!309;UBERON:0000475!8.04e-11!365;UBERON:0000353!7.79e-09!17;UBERON:0004573!1.39e-08!33;UBERON:0004571!1.39e-08!33;UBERON:0004211!6.62e-08!16;UBERON:0001285!6.62e-08!16;UBERON:0007684!6.62e-08!16;UBERON:0003220!6.62e-08!16;UBERON:0004208!6.62e-08!16;UBERON:0006555!4.51e-07!17;UBERON:0005103!4.51e-07!17;UBERON:0000083!4.51e-07!17;UBERON:0009201!4.51e-07!17;UBERON:0004819!4.51e-07!17;UBERON:0006553!4.51e-07!17;UBERON:0003074!4.51e-07!17;UBERON:0003060!4.51e-07!17;UBERON:0000025!5.41e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;1.93e-09;74!UBERON:0007500;3.99e-09;56!UBERON:0001981;3.99e-09;56!UBERON:0004537;3.99e-09;56!UBERON:0002049;1.02e-08;75!UBERON:0007798;1.02e-08;75!UBERON:0001637;1.22e-08;42!UBERON:0003509;1.22e-08;42!UBERON:0004572;1.22e-08;42!UBERON:0000055;1.67e-08;65!UBERON:0000353;1.79e-08;15!UBERON:0006555;4.53e-08;15!UBERON:0004819;4.53e-08;15!UBERON:0001285;4.53e-08;15!UBERON:0007684;4.53e-08;15!UBERON:0004573;1.07e-07;33!UBERON:0004571;1.07e-07;33!UBERON:0001225;7.40e-07;12!UBERON:0008987;7.40e-07;12 | |||
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| ||
|short_description=p1@YIF1B | |||
}} | }} |
Latest revision as of 19:19, 17 September 2015
Short description: | p1@YIF1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_YIF1B_5end |
Coexpression cluster: | C1147_Mesenchymal_Renal_Alveolar_Fibroblast_Placental_Pericytes_Hepatic |
Association with transcript: | 0bp_to_ENST00000337679, ENST00000339413, NM_001039672, NM_001039673, NM_001145463, uc002ohy.2, uc002ohz.2, uc002oia.2, uc002oib.2_5end |
EntrezGene: | YIF1B |
HGNC: | 30511 |
UniProt: | Q5BJH7Q9H5F7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.11e-22 | 121 |
embryonic cell | 6.41e-17 | 250 |
muscle precursor cell | 1.74e-15 | 58 |
myoblast | 1.74e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.74e-15 | 58 |
electrically responsive cell | 4.99e-15 | 61 |
electrically active cell | 4.99e-15 | 61 |
muscle cell | 7.82e-15 | 55 |
smooth muscle cell | 1.61e-13 | 43 |
smooth muscle myoblast | 1.61e-13 | 43 |
endothelial cell | 5.53e-11 | 36 |
vascular associated smooth muscle cell | 5.81e-11 | 32 |
fibroblast | 7.89e-11 | 76 |
meso-epithelial cell | 1.60e-10 | 45 |
epithelial cell of nephron | 4.78e-08 | 15 |
kidney cell | 1.49e-07 | 17 |
kidney epithelial cell | 1.49e-07 | 17 |
lining cell | 4.07e-07 | 58 |
barrier cell | 4.07e-07 | 58 |
endothelial cell of vascular tree | 7.10e-07 | 24 |
kidney cortical cell | 7.68e-07 | 12 |
renal cortical epithelial cell | 7.68e-07 | 12 |