FFCP PHASE1:Hg19::chr19:41859532..41859555,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:41859532..41859555,+
|short_description=p@chr19:41859532..41859555,+
|description=CAGE_peak_at_chr19:41859532..41859555,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:41859532..41859555,+ | |||
|coexpression_cluster_id=C1822 | |||
|description=CAGE_peak_at_chr19:41859532..41859555,+ | |||
|id=chr19:41859532..41859555,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.14e-16!42;CL:0000860!5.45e-14!45;CL:0002371!8.49e-13!591;CL:0000723!1.67e-12!436;CL:0000048!2.33e-12!430;CL:0000144!4.21e-12!625;CL:0000034!7.59e-12!444;CL:0002194!6.78e-11!63;CL:0000576!6.78e-11!63;CL:0000040!6.78e-11!63;CL:0000559!6.78e-11!63;CL:0000763!7.85e-11!112;CL:0000049!7.85e-11!112;CL:0002009!3.02e-10!65;CL:0000766!1.06e-09!76;CL:0002032!1.52e-09!165;CL:0000837!1.52e-09!165;CL:0000134!2.64e-09!358;CL:0000037!2.77e-09!172;CL:0000566!2.77e-09!172;CL:0002087!3.19e-09!119;CL:0002320!3.38e-09!365;CL:0000988!3.77e-09!182;CL:0000839!5.21e-09!70;CL:0000557!6.45e-09!71;CL:0000222!6.71e-08!119;CL:0000548!2.08e-07!679;CL:0000004!2.08e-07!679;CL:0000255!2.08e-07!679;CL:0000003!2.91e-07!722;CL:0000012!4.31e-07!682;CL:0002031!6.30e-07!124;CL:0000738!8.29e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.35e-29;33!CL:0002057;7.35e-29;33!CL:0000473;1.04e-20;39!CL:0000234;1.04e-20;39!CL:0000576;3.72e-15;48!CL:0000766;1.68e-08;69!CL:0000359;1.54e-07;32!CL:0000763;5.23e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.44e-28,42;CL:0002057,4.44e-28,42;CL:0000473,4.34e-25,48;CL:0000234,4.34e-25,48;CL:0002194,7.59e-18,59;CL:0000576,7.59e-18,59;CL:0000040,7.59e-18,59;CL:0000559,7.59e-18,59;CL:0002009,6.34e-17,61;CL:0000763,9.07e-17,108;CL:0000049,9.07e-17,108;CL:0000037,7.21e-16,168;CL:0002087,2.80e-15,115;CL:0000766,4.20e-15,72;CL:0002032,5.77e-15,161;CL:0000837,5.77e-15,161;CL:0000839,7.08e-15,66;CL:0000988,7.47e-15,177;CL:0000557,1.66e-14,67;CL:0000738,2.17e-12,136;CL:0002031,1.07e-11,120;CL:0000048,5.33e-08,427;CL:0000723,6.47e-08,433;CL:0000359,2.01e-07,32;CL:0000034,2.42e-07,441;CL:0000071,7.03e-07,18;CL:0002546,7.03e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;3.31e-20;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!9.38e-16!216;UBERON:0001637!1.20e-09!42;UBERON:0003509!1.20e-09!42;UBERON:0004572!1.20e-09!42;UBERON:0002390!1.06e-08!102;UBERON:0003061!1.06e-08!102;UBERON:0002384!1.65e-08!375;UBERON:0001474!1.94e-08!86;UBERON:0001981!3.10e-08!60;UBERON:0007500!3.10e-08!60;UBERON:0004537!3.10e-08!60;UBERON:0006965!3.10e-08!60;UBERON:0002193!4.58e-08!112;UBERON:0002371!4.70e-08!80;UBERON:0002204!7.39e-08!167;UBERON:0004872!1.55e-07!84;UBERON:0001009!2.33e-07!113;UBERON:0004535!2.53e-07!110;UBERON:0000055!3.22e-07!69;UBERON:0002049!4.50e-07!79;UBERON:0007798!4.50e-07!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.66e-07;42!UBERON:0003509;2.66e-07;42!UBERON:0004572;2.66e-07;42!UBERON:0007500;8.69e-07;56!UBERON:0001981;8.69e-07;56!UBERON:0004537;8.69e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.76e-20,203;UBERON:0002390,7.19e-13,98;UBERON:0003061,7.19e-13,98;UBERON:0002371,1.05e-12,76;UBERON:0002193,3.78e-12,108;UBERON:0001474,7.49e-12,82;UBERON:0004765,1.12e-10,90;UBERON:0007500,1.51e-10,59;UBERON:0001981,1.51e-10,59;UBERON:0004537,1.51e-10,59;UBERON:0006965,1.51e-10,59;UBERON:0001637,1.95e-10,42;UBERON:0003509,1.95e-10,42;UBERON:0004572,1.95e-10,42;UBERON:0002405,4.18e-10,93;UBERON:0002204,1.05e-09,167;UBERON:0004535,1.20e-09,109;UBERON:0001009,4.21e-09,112;UBERON:0000055,6.60e-09,68;UBERON:0000926,6.90e-09,315;UBERON:0004120,6.90e-09,315;UBERON:0006603,6.90e-09,315;UBERON:0002049,9.00e-09,78;UBERON:0007798,9.00e-09,78;UBERON:0001434,1.23e-08,100;UBERON:0004872,6.34e-08,83;UBERON:0004573,3.34e-07,33;UBERON:0004571,3.34e-07,33;UBERON:0004638,7.03e-07,18;UBERON:0001986,7.03e-07,18;UBERON:0004852,7.03e-07,18 | |||
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|phase1_expression=0,0.428201047781966,0,0,0.446961094427288,0,0,0,0.522371256399677,0,0.697801167972428,0.218441372130172,0.791300934685361,0,0,1.34465029290355,1.80808358407193,2.19093027116212,0,0,0.408001382488506,0,0,0.273748850145768,0.251085279189606,0.993374274723366,0.656804715599566,0.629686250509434,0.393364276848904,0,0.928896739896456,0.919421224478927,0.6024118375565,2.58827807116751,0.154934401160603,0,0,1.10799081706375,1.80490002723128,1.95309783644267,0.223915474239924,0,0.257575567634187,4.9435401185052,11.3362783106643,7.5201058968223,6.50801303335917,8.63452564845834,11.1494293522237,6.90461741573161,10.7587496742222,3.31075121844019,1.37898272294647,1.93645405075148,0,5.45902784673554,7.91427835167753,1.34834090667051,7.34601341690166,1.92557416245656,9.59005688698562,3.95821560224059,10.5715738539465,8.95071976118658,4.64334781805734,8.5107783703671,11.2108004819203,7.03496262718881,11.4726242052444,3.9093992046921,0,1.47311054395026,0.949387162322653,0.211255286311942,0.637812899895131,0,0.561643155732475,1.05123824989054,0.48217676009124,0.285012743741249,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,1.70763890732835,1.76171156811282,1.91136614062614,0,0,0.263384084775077,0.590129310341499,1.96505381374582,2.46721798799411,0,0,0,0,0.334231370655521,0.589211814949674,0.443067789167242,0,2.17755243533648,1.1705341280389,1.47994114143309,0.552700035571697,0.289803085735052,0.296573126324121,0,0,0,0.766440987203842,0.34362744548263,0.253019692019503,0,0,0,0,0.255973222308837,0,0.473554504088034,0,1.61285394579786,3.7441627409691,2.31719046212478,0,0,0,0.722878304769133,1.00267582127178,0.434539556882471,0,0.486634870302636,0.567208902984407,1.10864698731282,0.614843499851882,0,0,0.370784442784429,0.324547393654683,0.174129737299267,0.398873881556595,0.476981248610684,0,0,0.39752481473341,0,0.347140501607594,2.26123176769604,2.09749718104953,3.30141650328081,1.46296476575767,0.516833518338658,0,0.33472061276467,0.805658634218294,1.52054421143703,1.22031028774085,1.83831540172934,1.62028389576352,0.535798369704479,0,0.225222960966644,1.53316637465883,1.89853131913626,1.64881569537367,0,0,0,0.993943903390637,0.25326102332916,0,0.860509862246441,0.709336764396714,0,2.1349799145941,1.2333377420858,0,0.67355336034844,1.47115712802113,0.454072282934794,1.72852777344,0,0,0,0.149448680551801,0.469737994575059,0.161872944368132,0.561803226808994,0.204154171254893,0.245668634623536,0.206651562351531,1.18800285728205,0.989067717114227,0,1.43723628363248,0,0.500474079487857,0,0.438977620880838,0.30648779579902,0.150238058906597,0.453728732640084,1.79389635688862,0.213557388818567,0.211931901159562,1.80054657650641,0.206105058476878,0.772921620136887,0.744467425326359,0.843881661206331,0.194874010322397,0.504867548488229,0.552299391853796,0.161646056818812,1.06502877754984,0.302256294682921,0.169560592310488,0,0,0,0,0.132529768321485,0.464775771478074,0.10366105501537,0.252320850875628,0,1.56449532329816,0.643240938192885,0,0,0,0,0.337169380156203,0,0,0,0,0.134831308160164,0.196221465125346,0,1.4763109092493,0,0,0,0,0.982827216677626,0,0,0.245976877086227,0,0.878002283269004,1.1240175325762,0.603173834469785,0.185176890317059,0,4.15973914111831,0,0,0.234817388471643,0,0,0.570762456703795,0,0,0.738651018262192,0.234004265139238,0.743155811443641,0,0,0.141775097242386,0.179117045405697,0,1.53353071666084,0,0.44024217006613,0.829312462163088,0,0.12624243342638,0,0,0,0,0.205654985406647,0.300343057843917,0,0,0,0,0.387815147273333,0,0.845302752556,0.531876233169741,1.04007436911366,0.771622122786426,4.25547396069835,0.799266537048298,0.142977993658148,0.542621605391443,0.823240336780769,0,0,0,0.602878754119172,0,0.799783929456456,3.64871341923571,0.502257091432126,0,0.958499421966331,0,1.42636905040718,0.434343920002738,0.821905290201534,0.179060963239896,0.896681151948218,3.34952292343276,3.66566877261179,3.46526197955321,0,1.30139853857622,0,0,0,2.99602809578873,2.99161459204025,0.414415513436035,0.12269149171914,1.50051156317903,0.813795071099207,2.07970861530807,1.96271887676878,0.157702415033935,0.937131319941706,0,0,0,1.32845119707087,0.737476674166813,0.434418072340414,0,0.686286847621712,1.24060815673732,2.15714200818617,1.81436848265855,0,1.66435439510497,0.604780586659361,0.496215615637554,0.306923946576125,0.561320188866147,0.384417447767103,1.53512174720011,0.965123526861645,0,0.462629081407967,0,0.0821271560138091,0.519254429183621,0.581051892299796,0.120859449591622,0.40101294060657,0.920809889358963,0.459257792658427,0,1.04899531967539,0.451199612907412,0,0,0,0,3.4120015221269,2.2112181685947,0.647747748306418,3.08454505380579,0.541892875087706,1.50506932156456,0,0.831076008928724,0.447749509444357,0,0,0,0,0,0,1.28197250745681,0.82509499920588,0,0,0,0.580024309752732,0.308097234229289,0.921022048356777,0.689182862422653,0.429680979473094,0.435050081742686,0.681813019328807,0.356128142586949,0.661139661443912,0.576570202095319,0,0.30347334256665,1.39453664789186,2.83331112147576,0,0.924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| ||
|short_description=p@chr19:41859532..41859555,+ | |||
}} | }} |
Latest revision as of 08:24, 26 July 2015
Short description: | p@chr19:41859532..41859555, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:41859532..41859555, + |
Coexpression cluster: | C1822_CD14_CD8_Neutrophils_Natural_Renal_Endothelial_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.44e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.44e-28 | 42 |
defensive cell | 4.34e-25 | 48 |
phagocyte | 4.34e-25 | 48 |
monopoietic cell | 7.59e-18 | 59 |
monocyte | 7.59e-18 | 59 |
monoblast | 7.59e-18 | 59 |
promonocyte | 7.59e-18 | 59 |
macrophage dendritic cell progenitor | 6.34e-17 | 61 |
myeloid cell | 9.07e-17 | 108 |
common myeloid progenitor | 9.07e-17 | 108 |
hematopoietic stem cell | 7.21e-16 | 168 |
nongranular leukocyte | 2.80e-15 | 115 |
myeloid leukocyte | 4.20e-15 | 72 |
hematopoietic oligopotent progenitor cell | 5.77e-15 | 161 |
hematopoietic multipotent progenitor cell | 5.77e-15 | 161 |
myeloid lineage restricted progenitor cell | 7.08e-15 | 66 |
hematopoietic cell | 7.47e-15 | 177 |
granulocyte monocyte progenitor cell | 1.66e-14 | 67 |
leukocyte | 2.17e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 1.07e-11 | 120 |
multi fate stem cell | 5.33e-08 | 427 |
somatic stem cell | 6.47e-08 | 433 |
vascular associated smooth muscle cell | 2.01e-07 | 32 |
stem cell | 2.42e-07 | 441 |
blood vessel endothelial cell | 7.03e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.03e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.76e-20 | 203 |
hematopoietic system | 7.19e-13 | 98 |
blood island | 7.19e-13 | 98 |
bone marrow | 1.05e-12 | 76 |
hemolymphoid system | 3.78e-12 | 108 |
bone element | 7.49e-12 | 82 |
skeletal element | 1.12e-10 | 90 |
epithelial tube open at both ends | 1.51e-10 | 59 |
blood vessel | 1.51e-10 | 59 |
blood vasculature | 1.51e-10 | 59 |
vascular cord | 1.51e-10 | 59 |
artery | 1.95e-10 | 42 |
arterial blood vessel | 1.95e-10 | 42 |
arterial system | 1.95e-10 | 42 |
immune system | 4.18e-10 | 93 |
musculoskeletal system | 1.05e-09 | 167 |
cardiovascular system | 1.20e-09 | 109 |
circulatory system | 4.21e-09 | 112 |
vessel | 6.60e-09 | 68 |
mesoderm | 6.90e-09 | 315 |
mesoderm-derived structure | 6.90e-09 | 315 |
presumptive mesoderm | 6.90e-09 | 315 |
vasculature | 9.00e-09 | 78 |
vascular system | 9.00e-09 | 78 |
skeletal system | 1.23e-08 | 100 |
splanchnic layer of lateral plate mesoderm | 6.34e-08 | 83 |
systemic artery | 3.34e-07 | 33 |
systemic arterial system | 3.34e-07 | 33 |
blood vessel endothelium | 7.03e-07 | 18 |
endothelium | 7.03e-07 | 18 |
cardiovascular system endothelium | 7.03e-07 | 18 |