FFCP PHASE1:Hg19::chr7:142511138..142511149,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12214 | |HGNC=12214 | ||
|TSSclassifier=strong | |||
|UniProt=A0A5C0 | |UniProt=A0A5C0 | ||
|association_with_transcript=-54bp_to_ENST00000417977,uc003wbp.2_5end | |association_with_transcript=-54bp_to_ENST00000417977,uc003wbp.2_5end | ||
|cluster_id=chr7:142511138..142511149,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_4_at_TRBV30_5end | |description=CAGE_peak_4_at_TRBV30_5end | ||
|id=chr7:142511138..142511149,- | |id=chr7:142511138..142511149,- | ||
|ontology_enrichment_celltype=CL:0000791!1.05e-46!18;CL:0000789!1.05e-46!18;CL:0002420!1.05e-46!18;CL:0002419!1.05e-46!18;CL:0000790!1.05e-46!18;CL:0000084!1.18e-36!25;CL:0000827!1.18e-36!25;CL:0000625!3.54e-32!11;CL:0000838!5.96e-21!52;CL:0000542!1.89e-20!53;CL:0000051!1.89e-20!53;CL:0000624!4.19e-19!6;CL:0000080!1.74e-18!6;CL:0000898!1.04e-10!3;CL:0002087!1.57e-09!119;CL:0000842!2.63e-09!3;CL:0000738!5.26e-08!140;CL:0000815!8.41e-08!2;CL:0000792!8.41e-08!2;CL:0002677!8.41e-08!2;CL:0000224!4.41e-07!4;CL:0000988!7.72e-07!182 | |ontology_enrichment_celltype=CL:0000791!1.05e-46!18;CL:0000789!1.05e-46!18;CL:0002420!1.05e-46!18;CL:0002419!1.05e-46!18;CL:0000790!1.05e-46!18;CL:0000084!1.18e-36!25;CL:0000827!1.18e-36!25;CL:0000625!3.54e-32!11;CL:0000838!5.96e-21!52;CL:0000542!1.89e-20!53;CL:0000051!1.89e-20!53;CL:0000624!4.19e-19!6;CL:0000080!1.74e-18!6;CL:0000898!1.04e-10!3;CL:0002087!1.57e-09!119;CL:0000842!2.63e-09!3;CL:0000738!5.26e-08!140;CL:0000815!8.41e-08!2;CL:0000792!8.41e-08!2;CL:0002677!8.41e-08!2;CL:0000224!4.41e-07!4;CL:0000988!7.72e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.58e-54;18!CL:0000789;3.58e-54;18!CL:0002419;3.58e-54;18!CL:0000084;4.44e-44;25!CL:0000624;1.89e-31;6!CL:0000625;3.41e-29;11!CL:0000898;4.08e-17;3!CL:0000815;4.55e-12;2!CL:0000792;4.55e-12;2!CL:0002677;4.55e-12;2!CL:0000542;1.04e-11;53!CL:0000895;9.48e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.91e-54,18;CL:0000789,4.91e-54,18;CL:0002420,4.91e-54,18;CL:0002419,4.91e-54,18;CL:0000790,4.91e-54,18;CL:0000084,4.54e-44,25;CL:0000827,4.54e-44,25;CL:0000624,3.14e-31,6;CL:0000625,3.17e-29,11;CL:0000838,1.63e-19,52;CL:0000542,4.39e-19,53;CL:0000051,4.39e-19,53;CL:0000898,5.22e-17,3;CL:0000815,4.19e-12,2;CL:0000792,4.19e-12,2;CL:0002677,4.19e-12,2;CL:0002087,4.88e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;3.58e-54;18!CL:0000051;1.04e-11;53!CL:0002427;9.48e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060060;9.48e-07;1!DOID:0060061;9.48e-07;1!DOID:8691;9.48e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,6.43e-07,1;DOID:0060061,6.43e-07,1;DOID:8691,6.43e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!4.42e-27!15;UBERON:0000179!4.42e-27!15;UBERON:0000463!4.42e-27!15;UBERON:0004177!1.86e-10!7;UBERON:0002370!1.45e-07!4;UBERON:0005058!1.45e-07!4;UBERON:0009113!1.45e-07!4;UBERON:0003295!1.45e-07!4;UBERON:0005562!1.45e-07!4 | |ontology_enrichment_uberon=UBERON:0000178!4.42e-27!15;UBERON:0000179!4.42e-27!15;UBERON:0000463!4.42e-27!15;UBERON:0004177!1.86e-10!7;UBERON:0002370!1.45e-07!4;UBERON:0005058!1.45e-07!4;UBERON:0009113!1.45e-07!4;UBERON:0003295!1.45e-07!4;UBERON:0005562!1.45e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.28e-12;15!UBERON:0000179;3.28e-12;15!UBERON:0000463;3.28e-12;15!UBERON:0002390;8.61e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.94e-12,15;UBERON:0000179,2.94e-12,15;UBERON:0000463,2.94e-12,15 | |||
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| ||
|short_description=p4@TRBV30 | |short_description=p4@TRBV30 | ||
}} | }} |
Latest revision as of 22:18, 16 September 2015
Short description: | p4@TRBV30 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRBV30_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -54bp_to_ENST00000417977, uc003wbp.2_5end |
EntrezGene: | NA |
HGNC: | 12214 |
UniProt: | A0A5C0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.91e-54 | 18 |
alpha-beta T cell | 4.91e-54 | 18 |
immature T cell | 4.91e-54 | 18 |
mature T cell | 4.91e-54 | 18 |
immature alpha-beta T cell | 4.91e-54 | 18 |
T cell | 4.54e-44 | 25 |
pro-T cell | 4.54e-44 | 25 |
CD4-positive, alpha-beta T cell | 3.14e-31 | 6 |
CD8-positive, alpha-beta T cell | 3.17e-29 | 11 |
lymphoid lineage restricted progenitor cell | 1.63e-19 | 52 |
lymphocyte | 4.39e-19 | 53 |
common lymphoid progenitor | 4.39e-19 | 53 |
naive T cell | 5.22e-17 | 3 |
regulatory T cell | 4.19e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.19e-12 | 2 |
naive regulatory T cell | 4.19e-12 | 2 |
nongranular leukocyte | 4.88e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
blood | 2.94e-12 | 15 |
haemolymphatic fluid | 2.94e-12 | 15 |
organism substance | 2.94e-12 | 15 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 6.43e-07 | 1 |
cutaneous T cell lymphoma | 6.43e-07 | 1 |
mycosis fungoides | 6.43e-07 | 1 |