FFCP PHASE1:Hg19::chrX:134975858..134975877,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55511 | |EntrezGene=55511 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30369 | |HGNC=30369 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=4bp_to_uc010nry.1_5end | |association_with_transcript=4bp_to_uc010nry.1_5end | ||
|cluster_id=chrX:134975858..134975877,+ | |||
|coexpression_cluster_id=C4852 | |coexpression_cluster_id=C4852 | ||
|description=CAGE_peak_1_at_SAGE1_5end | |description=CAGE_peak_1_at_SAGE1_5end | ||
|id=chrX:134975858..134975877,+ | |id=chrX:134975858..134975877,+ | ||
|ontology_enrichment_celltype=CL:0000054!2.14e-09!2;CL:0000137!2.14e-09!2;CL:0000092!2.14e-09!2 | |ontology_enrichment_celltype=CL:0000054!2.14e-09!2;CL:0000137!2.14e-09!2;CL:0000092!2.14e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:0000319;4.32e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,5.28e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;4.32e-09;1 | |||
|ontology_enrichment_disease=DOID:1036!6.28e-14!8;DOID:4468!1.23e-09!2;DOID:200!2.14e-09!2;DOID:4305!2.14e-09!2 | |ontology_enrichment_disease=DOID:1036!6.28e-14!8;DOID:4468!1.23e-09!2;DOID:200!2.14e-09!2;DOID:4305!2.14e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.17e-25;8!DOID:0060085;1.91e-09;1!DOID:3165;1.91e-09;1!DOID:0060121;1.91e-09;1!DOID:2438;1.91e-09;1!DOID:4418;1.91e-09;1!DOID:8692;2.48e-09;31!DOID:3030;4.32e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.14e-25,8;DOID:0060085,1.99e-09,1;DOID:3165,1.99e-09,1;DOID:0060121,1.99e-09,1;DOID:2438,1.99e-09,1;DOID:4418,1.99e-09,1;DOID:8692,4.86e-09,31;DOID:3030,5.28e-09,1;DOID:162,5.39e-09,235;DOID:14566,9.78e-09,239;DOID:1240,4.44e-07,39;DOID:2531,4.60e-07,51;DOID:0060083,4.60e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000988!1.82e-12!3;UBERON:0006331!2.05e-12!3;UBERON:0002298!4.04e-12!8;UBERON:0002148!6.82e-09!2;UBERON:0009662!6.82e-09!2;UBERON:0004732!1.68e-07!13;UBERON:0002308!4.00e-07!9;UBERON:0000125!4.00e-07!9 | |ontology_enrichment_uberon=UBERON:0000988!1.82e-12!3;UBERON:0006331!2.05e-12!3;UBERON:0002298!4.04e-12!8;UBERON:0002148!6.82e-09!2;UBERON:0009662!6.82e-09!2;UBERON:0004732!1.68e-07!13;UBERON:0002308!4.00e-07!9;UBERON:0000125!4.00e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.32e-09;1!UBERON:0001785;4.32e-09;1!UBERON:0002464;4.32e-09;1!UBERON:0004904;4.32e-09;1!UBERON:0001021;4.32e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.83e-09,1;UBERON:0001785,3.83e-09,1;UBERON:0002464,3.83e-09,1;UBERON:0004904,3.83e-09,1;UBERON:0001021,3.83e-09,1;UBERON:0003902,3.83e-09,1;UBERON:0005425,3.83e-09,1 | |||
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| ||
|short_description=p1@SAGE1 | |short_description=p1@SAGE1 | ||
}} | }} |
Latest revision as of 13:50, 19 September 2015
Short description: | p1@SAGE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAGE1_5end |
Coexpression cluster: | C4852_gastric_ductal_adrenal_chronic_clear_bronchogenic_fibrosarcoma |
Association with transcript: | 4bp_to_uc010nry.1_5end |
EntrezGene: | SAGE1 |
HGNC: | 30369 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 5.28e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.83e-09 | 1 |
cranial nerve | 3.83e-09 | 1 |
nerve trunk | 3.83e-09 | 1 |
nerve connecting eye with brain | 3.83e-09 | 1 |
nerve | 3.83e-09 | 1 |
retinal neural layer | 3.83e-09 | 1 |
presumptive neural retina | 3.83e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.14e-25 | 8 |
organ system benign neoplasm | 1.99e-09 | 1 |
skin benign neoplasm | 1.99e-09 | 1 |
integumentary system benign neoplasm | 1.99e-09 | 1 |
dermis tumor | 1.99e-09 | 1 |
cutaneous fibrous histiocytoma | 1.99e-09 | 1 |
myeloid leukemia | 4.86e-09 | 31 |
mucinous adenocarcinoma | 5.28e-09 | 1 |
cancer | 5.39e-09 | 235 |
disease of cellular proliferation | 9.78e-09 | 239 |
leukemia | 4.44e-07 | 39 |
hematologic cancer | 4.60e-07 | 51 |
immune system cancer | 4.60e-07 | 51 |