FF:10086-102B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100 | |DRA_sample_Accession=CAGE@SAMD00004877 | ||
|accession_numbers=CAGE;DRX008675;DRR009547;DRZ000972;DRZ002357;DRZ012322;DRZ013707 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010086 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.58!3780.42!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.73!537.98!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.35!221.29!SEBOX;;chr1:27240455..27240474,-!p1@NR0B2!2.14!137.81!NR0B2;;chr19:12998003..12998021,-!p1@KLF1!2.08!120.58!KLF1;;chr19:50432453..50432468,+!p1@ATF5!2.03!5496.39!ATF5;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!107.33!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!1.98!95.40!MBNL3;;chrX:48644984..48645005,+!p1@GATA1!1.95!88.78!GATA1;;chr19:4153613..4153652,+!p1@CREB3L3!1.95!87.45!CREB3L3;;chr6:1312325..1312340,+!p1@FOXQ1!1.90!125.88!FOXQ1;;chr19:33793430..33793447,-!p1@CEBPA!1.89!306.09!CEBPA;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.06!PROX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.86!71.55!MLXIPL;;chrX:131547596..131547609,-!p10@MBNL3!1.82!64.93!MBNL3;;chr19:46367576..46367592,+!p1@FOXA3!1.76!56.98!FOXA3;;chr12:54689532..54689551,-!p4@NFE2!1.70!49.03!NFE2;;chr12:100867627..100867652,+!p1@NR1H4!1.65!43.73!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.61!39.75!NR1H4;;chr19:46800289..46800327,+!p2@HIF3A!1.60!38.43!HIF3A;;chr1:199996733..199996781,+!p1@NR5A2!1.60!38.43!NR5A2;;chr12:54694758..54694805,-!p1@NFE2!1.56!42.40!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.45!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.50!30.48!GFI1B;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.15!TAL1;;chr12:54694807..54694832,-!p3@NFE2!1.48!29.15!NFE2;;chr20:62680984..62680999,-!p1@SOX18!1.47!37.10!SOX18;;chr3:126076242..126076257,-!p1@KLF15!1.46!34.45!KLF15;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.18!HAND2;;chr19:54041669..54041697,+!p2@ZNF331!1.42!25.18!ZNF331;;chr20:43029862..43029900,+!p1@HNF4A!1.42!25.18!HNF4A;;chr16:85932760..85932775,+!p1@IRF8!1.42!25.18!IRF8;;chr20:50159198..50159299,-!p1@NFATC2!1.41!35.78!NFATC2;;chr15:53082521..53082549,-!p1@ONECUT1!1.40!23.85!ONECUT1;;chr3:126073018..126073036,-!p3@KLF15!1.40!23.85!KLF15;;chr11:47400078..47400106,-!p1@SPI1!1.40!23.85!SPI1;;chr1:201979743..201979762,+!p1@ELF3!1.37!22.53!ELF3;;chr10:94449703..94449718,+!p1@HHEX!1.36!82.15!HHEX;;chr11:16133391..16133439,-!p6@SOX6!1.35!21.20!SOX6;;chr11:47400062..47400077,-!p2@SPI1!1.35!21.20!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.29!41.08!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!1.29!19.88!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.55!KDM5D;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.55!ELF3;;chr1:47697881..47697910,-!p4@TAL1!1.26!17.23!TAL1;;chr12:54689552..54689574,-!p6@NFE2!1.26!17.23!NFE2;;chr15:61521495..61521506,-!p5@RORA!1.26!17.23!RORA;;chr17:26694979..26695007,-!p4@SEBOX!1.23!15.90!SEBOX;;chr1:199996702..199996732,+!p5@NR5A2!1.23!15.90!NR5A2;;chr16:79634624..79634642,-!p1@MAF!1.21!59.63!MAF;;chr8:71316403..71316427,-!p6@NCOA2!1.19!17.23!NCOA2;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.58!ZNF331;;chr1:151804244..151804310,-!p1@RORC!1.19!14.58!RORC;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.58!FOXA1;;chr2:68592406..68592424,+!p1@PLEK!1.19!14.58!PLEK;;chr3:126076264..126076305,-!p2@KLF15!1.18!19.88!KLF15;;chr16:79634595..79634620,-!p2@MAF!1.17!25.18!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.88!ZBTB16;;chr1:23857325..23857416,-!p2@E2F2!1.16!15.90!E2F2;;chrX:48644976..48644983,+!p2@GATA1!1.15!13.25!GATA1;;chr8:76319876..76319926,+!p1@HNF4G!1.15!13.25!HNF4G;;chr11:47279504..47279563,+!p1@NR1H3!1.14!29.15!NR1H3;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1562.26!CEBPD;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.50!C11orf9;;chr19:46801639..46801699,+!p1@HIF3A!1.11!11.93!HIF3A;;chr20:48808064..48808086,+!p15@CEBPB!1.11!11.93!CEBPB;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.93!ONECUT2;;chr15:60884706..60884743,-!p1@RORA!1.09!58.30!RORA;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.93!NCOA4;;chrX:131623044..131623089,-!p1@MBNL3!1.07!45.05!MBNL3;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.48!EPAS1;;chr1:23857698..23857733,-!p1@E2F2!1.07!19.88!E2F2;;chr22:29196547..29196563,-!p2@XBP1!1.06!390.90!XBP1;;chr12:54778471..54778528,-!p1@ZNF385A!1.06!10.60!ZNF385A;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.60!TCF21;;chr7:50344289..50344323,+!p1@IKZF1!1.06!10.60!IKZF1;;chr8:11561684..11561751,+!p1@GATA4!1.06!10.60!GATA4;;chr19:46806868..46806883,+!p3@HIF3A!1.06!10.60!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.60!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.06!10.60!HNF4A;;chr20:43030002..43030028,+!p3@HNF4A!1.06!10.60!HNF4A;;chr22:29196492..29196503,-!p3@XBP1!1.05!15.90!XBP1;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.58!GATA6;;chr14:35873101..35873119,-!p6@NFKBIA!1.04!13.25!NFKBIA;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!263.69!TSC22D3;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.28!ONECUT2;;chr20:48809000..48809053,+!p12@CEBPB!1.00!11.93!CEBPB;;chr5:176738887..176738934,-!p1@MXD3!0.99!59.63!MXD3;;chr19:50435736..50435781,+!p3@ATF5!0.98!11.93!ATF5;;chr8:37963466..37963506,+!p3@ASH2L!0.97!10.60!ASH2L;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.95!NCOA7;;chr7:73038867..73038878,-!p2@MLXIPL!0.95!7.95!MLXIPL;;chr17:53344945..53344977,+!p2@HLF!0.95!7.95!HLF;;chr19:13213555..13213568,-!p5@LYL1!0.95!7.95!LYL1;;chr2:68592394..68592405,+!p2@PLEK!0.95!7.95!PLEK;;chr4:174451350..174451363,-!p3@HAND2!0.95!7.95!HAND2;;chr1:161207986..161207998,-!p2@NR1I3!0.95!7.95!NR1I3;;chr1:199996831..199996843,+!p4@NR5A2!0.95!7.95!NR5A2;;chr1:47697965..47697991,-!p7@TAL1!0.95!7.95!TAL1;;chr20:61051039..61051057,-!p1@GATA5!0.95!7.95!GATA5;;chr21:39870339..39870443,-!p1@ERG!0.95!7.95!ERG;;chr11:19263160..19263176,-!p1@E2F8!0.94!9.28!E2F8;;chr8:81398444..81398472,+!p1@ZBTB10!0.93!31.80!ZBTB10;;chr17:1959369..1959388,+!p2@HIC1!0.92!19.88!HIC1;;chrX:131622958..131622978,-!p3@MBNL3!0.92!9.28!MBNL3;;chr21:40177845..40177863,+!p1@ETS2!0.91!445.22!ETS2;;chr5:76383133..76383186,-!p2@ZBED3!0.90!14.58!ZBED3;;chr8:71316428..71316459,-!p2@NCOA2!0.90!11.93!NCOA2;;chr17:53342311..53342400,+!p1@HLF!0.90!7.95!HLF;;chr1:212782094..212782109,+!p1@ATF3!0.89!193.46!ATF3;;chr3:187463179..187463201,-!p2@BCL6!0.89!29.15!BCL6;;chr3:24536253..24536328,-!p1@THRB!0.89!13.25!THRB;;chr2:157189180..157189290,-!p1@NR4A2!0.88!35.78!NR4A2;;chr14:73360799..73360817,-!p1@DPF3!0.88!23.85!DPF3;;chr2:74229812..74229867,+!p1@TET3!0.88!17.23!TET3;;chr3:24536485..24536500,-!p3@THRB!0.88!6.63!THRB;;chr11:16403882..16403908,-!p9@SOX6!0.88!6.63!SOX6;;chr12:101869096..101869118,+!p1@SPIC!0.88!6.63!SPIC;;chr12:121416340..121416360,+!p1@HNF1A!0.88!6.63!HNF1A;;chr6:1312155..1312187,+!p2@FOXQ1!0.88!6.63!FOXQ1;;chr7:73038889..73038905,-!p3@MLXIPL!0.88!6.63!MLXIPL;;chr19:50435673..50435690,+!p8@ATF5!0.88!6.63!ATF5;;chr19:58545454..58545498,+!p1@ZSCAN1!0.88!6.63!ZSCAN1;;chr1:161208013..161208038,-!p1@NR1I3!0.88!6.63!NR1I3;;chr1:214161358..214161377,+!p3@PROX1!0.88!6.63!PROX1;;chr1:47696918..47696935,-!p6@TAL1!0.88!6.63!TAL1;;chr1:92951607..92951661,-!p1@GFI1!0.88!6.63!GFI1;;chr9:137218281..137218340,+!p1@RXRA!0.87!190.81!RXRA;;chr12:52445218..52445237,+!p1@NR4A1!0.87!86.13!NR4A1;;chr13:72441315..72441454,-!p1@DACH1!0.87!13.25!DACH1;;chr6:7108179..7108199,+!p4@RREB1!0.86!13.25!RREB1;;chr11:113930291..113930339,+!p2@ZBTB16!0.86!10.60!ZBTB16;;chr18:6414884..6414942,-!p1@L3MBTL4!0.86!7.95!L3MBTL4;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.90!PPARG;;chr19:13213662..13213686,-!p1@LYL1!0.85!9.28!LYL1;;chr22:38597987..38598021,+!p2@MAFF!0.84!38.43!MAFF;;chr22:46546494..46546525,+!p2@PPARA!0.84!11.93!PPARA;;chr7:113726357..113726443,+!p1@FOXP2!0.84!10.60!FOXP2;;chr2:239148671..239148686,-!p1@HES6!0.83!22.53!HES6;;chrX:131624056..131624069,-!p2@MBNL3!0.83!7.95!MBNL3;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.63!TCF4;;chr20:2673383..2673441,+!p1@EBF4!0.82!9.28!EBF4;;chr14:35872962..35873025,-!p3@NFKBIA!0.81!14.58!NFKBIA;;chr9:94186085..94186096,-!p3@NFIL3!0.81!9.28!NFIL3;;chr19:926001..926046,+!p1@ARID3A!0.80!19.88!ARID3A;;chrX:66763856..66763896,+!p1@AR!0.80!7.95!AR;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.30!ZFY;;chr9:135854074..135854089,+!p2@GFI1B!0.80!5.30!GFI1B;;chrX:131540410..131540438,-!p13@MBNL3!0.80!5.30!MBNL3;;chrX:48645010..48645015,+!p3@GATA1!0.80!5.30!GATA1;;chrX:131623026..131623039,-!p5@MBNL3!0.80!5.30!MBNL3;;chr11:16133375..16133390,-!p19@SOX6!0.80!5.30!SOX6;;chr11:16403910..16403933,-!p12@SOX6!0.80!5.30!SOX6;;chr7:97840743..97840786,+!p1@BHLHA15!0.80!5.30!BHLHA15;;chr8:28244374..28244382,-!p26@ZNF395!0.80!5.30!ZNF395;;chr19:54041574..54041589,+!p6@ZNF331!0.80!5.30!ZNF331;;chr1:40105299..40105326,-!p1@HEYL!0.80!5.30!HEYL;;chr1:42801540..42801562,-!p4@FOXJ3!0.80!5.30!FOXJ3;;chr1:47698007..47698019,-!p13@TAL1!0.80!5.30!TAL1;;chr20:62365987..62365998,+!p8@ZGPAT!0.80!5.30!ZGPAT;;chr17:6926362..6926377,+!p1@BCL6B!0.80!5.30!BCL6B;;chr19:13213634..13213645,-!p8@LYL1!0.80!5.30!LYL1;;chr3:71179746..71179783,-!p7@FOXP1!0.79!18.55!FOXP1;;chr16:86544113..86544145,+!p1@FOXF1!0.79!6.63!FOXF1;;chr2:8822176..8822196,+!p1@ID2!0.78!769.87!ID2;;chr13:41240717..41240735,-!p2@FOXO1!0.78!37.10!FOXO1;;chr10:94449675..94449694,+!p2@HHEX!0.78!14.58!HHEX;;chr5:76383070..76383117,-!p3@ZBED3!0.78!10.60!ZBED3;;chr11:695731..695765,-!p5@DEAF1!0.78!6.63!DEAF1;;chr3:71179699..71179744,-!p2@FOXP1!0.77!39.75!FOXP1;;chr15:96873984..96873999,+!p3@NR2F2!0.77!39.75!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.77!33.13!SREBF1;;chr3:12329397..12329433,+!p2@PPARG!0.77!11.93!PPARG;;chr2:10091815..10091864,+!p1@GRHL1!0.77!6.63!GRHL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.76!13.25!ZFPM2;;chr22:29196433..29196445,-!p4@XBP1!0.76!5.30!XBP1;;chr13:41240737..41240787,-!p1@FOXO1!0.75!60.95!FOXO1;;chr2:10183651..10183713,+!p1@KLF11!0.75!37.10!KLF11;;chr20:42295713..42295738,+!p2@MYBL2!0.75!30.48!MYBL2;;chr19:4067039..4067064,-!p3@ZBTB7A!0.75!14.58!ZBTB7A;;chr4:38665769..38665801,+!p2@KLF3!0.73!43.73!KLF3;;chr19:17356436..17356481,-!p3@NR2F6!0.73!7.95!NR2F6;;chr20:6748325..6748352,+!p1@BMP2!0.73!6.63!BMP2;;chr6:7108210..7108221,+!p7@RREB1!0.73!5.30!RREB1;;chr6:91006575..91006602,-!p2@BACH2!0.72!6.63!BACH2;;chr8:28243813..28243839,-!p4@ZNF395!0.71!7.95!ZNF395;;chr19:56111614..56111634,+!p3@ZNF524!0.71!6.63!ZNF524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| |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.58!3780.42!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.73!537.98!SEBOX;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.35!221.29!SEBOX;;chr1:27240455..27240474,-!p1@NR0B2!2.14!137.81!NR0B2;;chr19:12998003..12998021,-!p1@KLF1!2.08!120.58!KLF1;;chr19:50432453..50432468,+!p1@ATF5!2.03!5496.39!ATF5;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!107.33!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!1.98!95.40!MBNL3;;chrX:48644984..48645005,+!p1@GATA1!1.95!88.78!GATA1;;chr19:4153613..4153652,+!p1@CREB3L3!1.95!87.45!CREB3L3;;chr6:1312325..1312340,+!p1@FOXQ1!1.90!125.88!FOXQ1;;chr19:33793430..33793447,-!p1@CEBPA!1.89!306.09!CEBPA;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.06!PROX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.86!71.55!MLXIPL;;chrX:131547596..131547609,-!p10@MBNL3!1.82!64.93!MBNL3;;chr19:46367576..46367592,+!p1@FOXA3!1.76!56.98!FOXA3;;chr12:54689532..54689551,-!p4@NFE2!1.70!49.03!NFE2;;chr12:100867627..100867652,+!p1@NR1H4!1.65!43.73!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.61!39.75!NR1H4;;chr19:46800289..46800327,+!p2@HIF3A!1.60!38.43!HIF3A;;chr1:199996733..199996781,+!p1@NR5A2!1.60!38.43!NR5A2;;chr12:54694758..54694805,-!p1@NFE2!1.56!42.40!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.45!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.50!30.48!GFI1B;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.15!TAL1;;chr12:54694807..54694832,-!p3@NFE2!1.48!29.15!NFE2;;chr20:62680984..62680999,-!p1@SOX18!1.47!37.10!SOX18;;chr3:126076242..126076257,-!p1@KLF15!1.46!34.45!KLF15;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.18!HAND2;;chr19:54041669..54041697,+!p2@ZNF331!1.42!25.18!ZNF331;;chr20:43029862..43029900,+!p1@HNF4A!1.42!25.18!HNF4A;;chr16:85932760..85932775,+!p1@IRF8!1.42!25.18!IRF8;;chr20:50159198..50159299,-!p1@NFATC2!1.41!35.78!NFATC2;;chr15:53082521..53082549,-!p1@ONECUT1!1.40!23.85!ONECUT1;;chr3:126073018..126073036,-!p3@KLF15!1.40!23.85!KLF15;;chr11:47400078..47400106,-!p1@SPI1!1.40!23.85!SPI1;;chr1:201979743..201979762,+!p1@ELF3!1.37!22.53!ELF3;;chr10:94449703..94449718,+!p1@HHEX!1.36!82.15!HHEX;;chr11:16133391..16133439,-!p6@SOX6!1.35!21.20!SOX6;;chr11:47400062..47400077,-!p2@SPI1!1.35!21.20!SPI1;;chr10:51572339..51572376,+!p4@NCOA4!1.29!41.08!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!1.29!19.88!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.55!KDM5D;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.55!ELF3;;chr1:47697881..47697910,-!p4@TAL1!1.26!17.23!TAL1;;chr12:54689552..54689574,-!p6@NFE2!1.26!17.23!NFE2;;chr15:61521495..61521506,-!p5@RORA!1.26!17.23!RORA;;chr17:26694979..26695007,-!p4@SEBOX!1.23!15.90!SEBOX;;chr1:199996702..199996732,+!p5@NR5A2!1.23!15.90!NR5A2;;chr16:79634624..79634642,-!p1@MAF!1.21!59.63!MAF;;chr8:71316403..71316427,-!p6@NCOA2!1.19!17.23!NCOA2;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.58!ZNF331;;chr1:151804244..151804310,-!p1@RORC!1.19!14.58!RORC;;chr14:38064429..38064486,-!p1@FOXA1!1.19!14.58!FOXA1;;chr2:68592406..68592424,+!p1@PLEK!1.19!14.58!PLEK;;chr3:126076264..126076305,-!p2@KLF15!1.18!19.88!KLF15;;chr16:79634595..79634620,-!p2@MAF!1.17!25.18!MAF;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.88!ZBTB16;;chr1:23857325..23857416,-!p2@E2F2!1.16!15.90!E2F2;;chrX:48644976..48644983,+!p2@GATA1!1.15!13.25!GATA1;;chr8:76319876..76319926,+!p1@HNF4G!1.15!13.25!HNF4G;;chr11:47279504..47279563,+!p1@NR1H3!1.14!29.15!NR1H3;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1562.26!CEBPD;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.50!C11orf9;;chr19:46801639..46801699,+!p1@HIF3A!1.11!11.93!HIF3A;;chr20:48808064..48808086,+!p15@CEBPB!1.11!11.93!CEBPB;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.93!ONECUT2;;chr15:60884706..60884743,-!p1@RORA!1.09!58.30!RORA;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.93!NCOA4;;chrX:131623044..131623089,-!p1@MBNL3!1.07!45.05!MBNL3;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.48!EPAS1;;chr1:23857698..23857733,-!p1@E2F2!1.07!19.88!E2F2;;chr22:29196547..29196563,-!p2@XBP1!1.06!390.90!XBP1;;chr12:54778471..54778528,-!p1@ZNF385A!1.06!10.60!ZNF385A;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.60!TCF21;;chr7:50344289..50344323,+!p1@IKZF1!1.06!10.60!IKZF1;;chr8:11561684..11561751,+!p1@GATA4!1.06!10.60!GATA4;;chr19:46806868..46806883,+!p3@HIF3A!1.06!10.60!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.60!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.06!10.60!HNF4A;;chr20:43030002..43030028,+!p3@HNF4A!1.06!10.60!HNF4A;;chr22:29196492..29196503,-!p3@XBP1!1.05!15.90!XBP1;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.58!GATA6;;chr14:35873101..35873119,-!p6@NFKBIA!1.04!13.25!NFKBIA;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!263.69!TSC22D3;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.28!ONECUT2;;chr20:48809000..48809053,+!p12@CEBPB!1.00!11.93!CEBPB;;chr5:176738887..176738934,-!p1@MXD3!0.99!59.63!MXD3;;chr19:50435736..50435781,+!p3@ATF5!0.98!11.93!ATF5;;chr8:37963466..37963506,+!p3@ASH2L!0.97!10.60!ASH2L;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.95!NCOA7;;chr7:73038867..73038878,-!p2@MLXIPL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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854 | |||
|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520fetal%252c%2520pool1.CNhs11798.10086-102B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10086-102B5 | |id=FF:10086-102B5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010086 | ||
|is_obsolete= | |||
|library_id=CNhs11798 | |||
|library_id_phase_based=2:CNhs11798 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10086 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10086 | |||
|name=liver, fetal, pool1 | |name=liver, fetal, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11798,LSID820,release009,COMPLETED | |profile_hcage=CNhs11798,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.419448993618425,0.433053662932082,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0391261744734,0,0,0,0,0,0.91384431600708,0,0,0.233479235284708,0,0,0,0,0,0,0,0,0,0,0,0,0.448803384236336,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.854850730481002,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0394472283846013,0,0,0,0,0,0,0,0,0,0,-0.0334166371915005,-0.211197402695869,0,0,0,0,-0.0980353512377064,0.26120257154855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.36643582506357,0.341382490188805,0,0,0,0,0,0 | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat: 636643 Lot: 8101369A-6 | |rna_catalog_number=Cat: 636643 Lot: 8101369A-6 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.24963389386559e-241!GO:0005737;cytoplasm;2.3530083340876e-220!GO:0044444;cytoplasmic part;7.53866649696593e-181!GO:0043231;intracellular membrane-bound organelle;5.42852772088252e-122!GO:0043227;membrane-bound organelle;5.42852772088252e-122!GO:0043226;organelle;1.54874212735854e-116!GO:0043229;intracellular organelle;3.03301087376756e-116!GO:0044422;organelle part;8.88361375743728e-109!GO:0044446;intracellular organelle part;3.34976432487507e-107!GO:0005739;mitochondrion;1.29900794260936e-94!GO:0044237;cellular metabolic process;1.4260110337806e-77!GO:0044238;primary metabolic process;1.05056975688854e-71!GO:0032991;macromolecular complex;1.81053600174219e-68!GO:0031090;organelle membrane;6.34362632538458e-66!GO:0009058;biosynthetic process;2.02704832851999e-63!GO:0044429;mitochondrial part;1.30452026147616e-62!GO:0005515;protein binding;7.52143231451577e-57!GO:0019538;protein metabolic process;1.24137604814423e-54!GO:0030529;ribonucleoprotein complex;2.45914026254599e-53!GO:0044249;cellular biosynthetic process;6.150439807439e-52!GO:0044260;cellular macromolecule metabolic process;1.69793214776688e-50!GO:0044267;cellular protein metabolic process;9.57267547865531e-49!GO:0031967;organelle envelope;1.7197190399429e-48!GO:0031975;envelope;4.81082760876932e-48!GO:0043233;organelle lumen;2.31682219442884e-47!GO:0031974;membrane-enclosed lumen;2.31682219442884e-47!GO:0005829;cytosol;3.79304479639167e-43!GO:0009059;macromolecule biosynthetic process;1.12029094765215e-42!GO:0043170;macromolecule metabolic process;3.85289964785149e-42!GO:0005840;ribosome;2.55292739388851e-41!GO:0006412;translation;2.61788552931478e-41!GO:0005740;mitochondrial envelope;1.09008718385308e-40!GO:0019866;organelle inner membrane;3.24643342488088e-39!GO:0031966;mitochondrial membrane;5.74534838531821e-39!GO:0043234;protein complex;1.28574364082417e-37!GO:0005743;mitochondrial inner membrane;3.12994521744007e-37!GO:0003735;structural constituent of ribosome;4.28817695423299e-36!GO:0003723;RNA binding;5.49582174774187e-36!GO:0005783;endoplasmic reticulum;1.41533855978727e-33!GO:0016043;cellular component organization and biogenesis;3.30117913687163e-32!GO:0033279;ribosomal subunit;1.10512840334738e-31!GO:0006082;organic acid metabolic process;3.01924807360107e-31!GO:0044428;nuclear part;4.39090570616486e-31!GO:0015031;protein transport;4.48730061491043e-31!GO:0033036;macromolecule localization;9.94434601949004e-31!GO:0019752;carboxylic acid metabolic process;2.59168371294031e-30!GO:0016491;oxidoreductase activity;1.78573092641138e-29!GO:0045184;establishment of protein localization;2.1204804466283e-29!GO:0008104;protein localization;2.76166170240906e-29!GO:0031980;mitochondrial lumen;2.78930678830436e-29!GO:0005759;mitochondrial matrix;2.78930678830436e-29!GO:0044248;cellular catabolic process;3.30115315215847e-28!GO:0012505;endomembrane system;1.43418281040444e-26!GO:0044432;endoplasmic reticulum part;1.0136907864457e-25!GO:0065003;macromolecular complex assembly;1.07612906903853e-25!GO:0051186;cofactor metabolic process;5.56751756242454e-25!GO:0046907;intracellular transport;1.77343517522378e-24!GO:0044445;cytosolic part;4.01497426788213e-24!GO:0006950;response to stress;1.81783356869294e-23!GO:0009056;catabolic process;3.15365951120234e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.54086058206241e-23!GO:0006886;intracellular protein transport;1.29593523758088e-22!GO:0022607;cellular component assembly;2.48411411563894e-22!GO:0044255;cellular lipid metabolic process;1.07121202005739e-21!GO:0006119;oxidative phosphorylation;2.56880135018154e-21!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.906194208032e-21!GO:0005789;endoplasmic reticulum membrane;1.22986981183977e-20!GO:0044455;mitochondrial membrane part;4.58793275168774e-20!GO:0006091;generation of precursor metabolites and energy;6.01304692467023e-20!GO:0006629;lipid metabolic process;9.86777082481845e-20!GO:0016071;mRNA metabolic process;1.24385816522597e-19!GO:0006396;RNA processing;1.33350615124409e-18!GO:0006807;nitrogen compound metabolic process;2.72065943312288e-18!GO:0006732;coenzyme metabolic process;3.0604230816523e-18!GO:0005746;mitochondrial respiratory chain;4.95378575976904e-18!GO:0015935;small ribosomal subunit;1.91778536057047e-17!GO:0008380;RNA splicing;3.1768454773041e-17!GO:0031981;nuclear lumen;3.8495041496693e-17!GO:0009055;electron carrier activity;1.25592122464453e-16!GO:0000166;nucleotide binding;1.44098837163142e-16!GO:0009308;amine metabolic process;2.79221147648382e-16!GO:0051649;establishment of cellular localization;4.9410782832405e-16!GO:0006397;mRNA processing;5.85934728618058e-16!GO:0048770;pigment granule;6.34399881874009e-16!GO:0042470;melanosome;6.34399881874009e-16!GO:0051641;cellular localization;6.37846560948655e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.02171057035937e-16!GO:0003954;NADH dehydrogenase activity;7.02171057035937e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.02171057035937e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.11014675198714e-16!GO:0008219;cell death;8.66152335362756e-16!GO:0016265;death;8.66152335362756e-16!GO:0012501;programmed cell death;1.33603781489326e-15!GO:0006915;apoptosis;1.52422017277097e-15!GO:0044265;cellular macromolecule catabolic process;1.61760673612839e-15!GO:0016874;ligase activity;1.8936125244959e-15!GO:0015934;large ribosomal subunit;2.08732786470957e-15!GO:0005794;Golgi apparatus;6.80744488448413e-15!GO:0006519;amino acid and derivative metabolic process;6.96222893777713e-15!GO:0009057;macromolecule catabolic process;9.76499950317086e-15!GO:0006996;organelle organization and biogenesis;1.09108767846425e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.18809105537202e-14!GO:0002526;acute inflammatory response;3.13854063923877e-14!GO:0032787;monocarboxylic acid metabolic process;3.78403843602279e-14!GO:0006520;amino acid metabolic process;4.29575170391404e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.83447741450694e-14!GO:0045271;respiratory chain complex I;5.83447741450694e-14!GO:0005747;mitochondrial respiratory chain complex I;5.83447741450694e-14!GO:0005634;nucleus;6.39729662941842e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.48559483394264e-14!GO:0042773;ATP synthesis coupled electron transport;6.48559483394264e-14!GO:0006066;alcohol metabolic process;8.0919053952534e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.1985374378694e-13!GO:0016462;pyrophosphatase activity;1.22689471268759e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.59174508137642e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.88011207917957e-13!GO:0006457;protein folding;2.28392200327294e-13!GO:0051082;unfolded protein binding;3.24122269452319e-13!GO:0016192;vesicle-mediated transport;4.06677699600257e-13!GO:0043228;non-membrane-bound organelle;4.87630717613193e-13!GO:0043232;intracellular non-membrane-bound organelle;4.87630717613193e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.4165107261103e-13!GO:0017111;nucleoside-triphosphatase activity;8.89170808567783e-13!GO:0005681;spliceosome;1.59791520365499e-12!GO:0048037;cofactor binding;1.81214847865459e-12!GO:0008134;transcription factor binding;1.87867130911781e-12!GO:0044262;cellular carbohydrate metabolic process;1.97896449260499e-12!GO:0043285;biopolymer catabolic process;2.51428402665017e-12!GO:0022618;protein-RNA complex assembly;2.86477070627868e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.34751641263289e-12!GO:0017076;purine nucleotide binding;4.4662887104055e-12!GO:0005761;mitochondrial ribosome;5.09824157201621e-12!GO:0000313;organellar ribosome;5.09824157201621e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;5.45942923552605e-12!GO:0006118;electron transport;5.59671608819352e-12!GO:0005793;ER-Golgi intermediate compartment;7.33316006820639e-12!GO:0044257;cellular protein catabolic process;7.99169683891502e-12!GO:0006511;ubiquitin-dependent protein catabolic process;9.20837745490467e-12!GO:0019941;modification-dependent protein catabolic process;9.20837745490467e-12!GO:0043632;modification-dependent macromolecule catabolic process;9.20837745490467e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.09234678489211e-11!GO:0043412;biopolymer modification;1.45191379542008e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.48719709891393e-11!GO:0030163;protein catabolic process;1.65141284521908e-11!GO:0006605;protein targeting;1.80224689934284e-11!GO:0016787;hydrolase activity;1.80489015493516e-11!GO:0006259;DNA metabolic process;4.06616906188908e-11!GO:0051188;cofactor biosynthetic process;6.23582923101239e-11!GO:0016125;sterol metabolic process;6.50893755420858e-11!GO:0005654;nucleoplasm;6.80149342243943e-11!GO:0006464;protein modification process;7.22699691118347e-11!GO:0032553;ribonucleotide binding;1.94256166850964e-10!GO:0032555;purine ribonucleotide binding;1.94256166850964e-10!GO:0006512;ubiquitin cycle;2.34190415208834e-10!GO:0008135;translation factor activity, nucleic acid binding;2.66358330995183e-10!GO:0030554;adenyl nucleotide binding;3.50255000149342e-10!GO:0043069;negative regulation of programmed cell death;3.74039854666473e-10!GO:0006958;complement activation, classical pathway;3.7844208937552e-10!GO:0043066;negative regulation of apoptosis;4.73945770244688e-10!GO:0042981;regulation of apoptosis;5.26198503348613e-10!GO:0008610;lipid biosynthetic process;6.3735852478842e-10!GO:0005773;vacuole;6.45416622589287e-10!GO:0006913;nucleocytoplasmic transport;6.95318459697459e-10!GO:0048193;Golgi vesicle transport;7.02896212716873e-10!GO:0002541;activation of plasma proteins during acute inflammatory response;7.3338418024265e-10!GO:0006956;complement activation;7.3338418024265e-10!GO:0043067;regulation of programmed cell death;9.2326387371901e-10!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;9.4168644680963e-10!GO:0002455;humoral immune response mediated by circulating immunoglobulin;9.487361714661e-10!GO:0006631;fatty acid metabolic process;1.436254615782e-09!GO:0008203;cholesterol metabolic process;1.47288572184943e-09!GO:0006461;protein complex assembly;1.52854317016361e-09!GO:0051169;nuclear transport;1.60056925262862e-09!GO:0005635;nuclear envelope;2.22765380646468e-09!GO:0005975;carbohydrate metabolic process;2.28812653698334e-09!GO:0048523;negative regulation of cellular process;2.40935106927884e-09!GO:0044451;nucleoplasm part;4.52419122821971e-09!GO:0044270;nitrogen compound catabolic process;4.56493323950483e-09!GO:0046483;heterocycle metabolic process;4.78891650437727e-09!GO:0000323;lytic vacuole;6.03399420819968e-09!GO:0005764;lysosome;6.03399420819968e-09!GO:0048519;negative regulation of biological process;8.42079125351688e-09!GO:0016740;transferase activity;8.55037103671842e-09!GO:0046930;pore complex;9.42227516913574e-09!GO:0005768;endosome;9.76925082231065e-09!GO:0032559;adenyl ribonucleotide binding;1.11562607828779e-08!GO:0043687;post-translational protein modification;1.14048273574759e-08!GO:0051246;regulation of protein metabolic process;1.14440422246244e-08!GO:0050662;coenzyme binding;1.4197647580393e-08!GO:0051187;cofactor catabolic process;1.42582565041899e-08!GO:0008565;protein transporter activity;1.86693162874649e-08!GO:0005524;ATP binding;2.06397555799217e-08!GO:0016126;sterol biosynthetic process;2.16043728757436e-08!GO:0006979;response to oxidative stress;2.16043728757436e-08!GO:0006413;translational initiation;2.65288361573202e-08!GO:0009310;amine catabolic process;2.67313854160298e-08!GO:0006446;regulation of translational initiation;3.05170115759011e-08!GO:0043283;biopolymer metabolic process;3.22414841342213e-08!GO:0045333;cellular respiration;3.47974248420836e-08!GO:0009060;aerobic respiration;3.53176182668306e-08!GO:0017038;protein import;3.53176182668306e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.68551332960978e-08!GO:0003743;translation initiation factor activity;5.18152594007128e-08!GO:0016887;ATPase activity;5.67129131790751e-08!GO:0009063;amino acid catabolic process;5.87462052132639e-08!GO:0005777;peroxisome;5.96501436270937e-08!GO:0042579;microbody;5.96501436270937e-08!GO:0003712;transcription cofactor activity;6.10888145396138e-08!GO:0006084;acetyl-CoA metabolic process;6.51146217569398e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;7.36569071020796e-08!GO:0000375;RNA splicing, via transesterification reactions;7.36569071020796e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.36569071020796e-08!GO:0044453;nuclear membrane part;7.42379426335805e-08!GO:0006916;anti-apoptosis;7.46243257588598e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.00528193905069e-08!GO:0006793;phosphorus metabolic process;1.4335887331492e-07!GO:0006796;phosphate metabolic process;1.4335887331492e-07!GO:0006099;tricarboxylic acid cycle;1.43649371670917e-07!GO:0046356;acetyl-CoA catabolic process;1.43649371670917e-07!GO:0031988;membrane-bound vesicle;1.52677812168752e-07!GO:0007049;cell cycle;1.54388370251858e-07!GO:0016829;lyase activity;1.79558995812034e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.83569567445881e-07!GO:0006695;cholesterol biosynthetic process;2.48064740640262e-07!GO:0005996;monosaccharide metabolic process;2.51543067320772e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.72152962851856e-07!GO:0015980;energy derivation by oxidation of organic compounds;2.76586576901875e-07!GO:0031965;nuclear membrane;3.00847905894273e-07!GO:0009109;coenzyme catabolic process;3.08938612531118e-07!GO:0019829;cation-transporting ATPase activity;3.12716387209982e-07!GO:0019318;hexose metabolic process;3.33301400471952e-07!GO:0051789;response to protein stimulus;3.63310079802197e-07!GO:0006986;response to unfolded protein;3.63310079802197e-07!GO:0002253;activation of immune response;3.95980057980177e-07!GO:0009611;response to wounding;3.99700128101695e-07!GO:0006006;glucose metabolic process;4.02826022518978e-07!GO:0006752;group transfer coenzyme metabolic process;4.02826022518978e-07!GO:0005770;late endosome;4.9322837211453e-07!GO:0009108;coenzyme biosynthetic process;5.00675956275869e-07!GO:0006334;nucleosome assembly;5.00825224096434e-07!GO:0007599;hemostasis;5.44744031304428e-07!GO:0031982;vesicle;5.8040594716322e-07!GO:0015986;ATP synthesis coupled proton transport;5.8683309050823e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.8683309050823e-07!GO:0008202;steroid metabolic process;5.98741634059495e-07!GO:0009259;ribonucleotide metabolic process;9.04207973358677e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;9.1733678731423e-07!GO:0005506;iron ion binding;9.26017304130766e-07!GO:0005730;nucleolus;1.08008366329426e-06!GO:0042623;ATPase activity, coupled;1.15089764382853e-06!GO:0006163;purine nucleotide metabolic process;1.28340806283662e-06!GO:0031410;cytoplasmic vesicle;1.28691301513183e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.45004967554653e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.48024835677911e-06!GO:0009719;response to endogenous stimulus;1.69234466441056e-06!GO:0006778;porphyrin metabolic process;1.83091368931394e-06!GO:0033013;tetrapyrrole metabolic process;1.83091368931394e-06!GO:0009117;nucleotide metabolic process;1.93974218101134e-06!GO:0044431;Golgi apparatus part;2.33990431457788e-06!GO:0008639;small protein conjugating enzyme activity;2.60589993338327e-06!GO:0045259;proton-transporting ATP synthase complex;2.67885059835711e-06!GO:0009150;purine ribonucleotide metabolic process;2.8203594203704e-06!GO:0030120;vesicle coat;2.91715265849953e-06!GO:0030662;coated vesicle membrane;2.91715265849953e-06!GO:0007596;blood coagulation;3.05214208779314e-06!GO:0006164;purine nucleotide biosynthetic process;3.52214159451197e-06!GO:0006323;DNA packaging;3.54136481156307e-06!GO:0004842;ubiquitin-protein ligase activity;3.6202581671186e-06!GO:0031497;chromatin assembly;3.7364882897766e-06!GO:0005643;nuclear pore;3.78980898735695e-06!GO:0051170;nuclear import;4.31407035254253e-06!GO:0016310;phosphorylation;4.80843267829678e-06!GO:0065004;protein-DNA complex assembly;4.80843267829678e-06!GO:0051276;chromosome organization and biogenesis;5.11069911084029e-06!GO:0008652;amino acid biosynthetic process;5.18404494722187e-06!GO:0000785;chromatin;5.44525970356555e-06!GO:0009260;ribonucleotide biosynthetic process;5.8341913530025e-06!GO:0006869;lipid transport;5.99085509976039e-06!GO:0042168;heme metabolic process;6.09743684471669e-06!GO:0006606;protein import into nucleus;6.14972375128652e-06!GO:0006754;ATP biosynthetic process;6.31562339531472e-06!GO:0006753;nucleoside phosphate metabolic process;6.31562339531472e-06!GO:0050817;coagulation;6.89066074653081e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.02467483789897e-06!GO:0009142;nucleoside triphosphate biosynthetic process;7.36955408229818e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.36955408229818e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.55855308554184e-06!GO:0006333;chromatin assembly or disassembly;7.63095054603709e-06!GO:0005788;endoplasmic reticulum lumen;8.40386175725864e-06!GO:0046870;cadmium ion binding;8.4069388417958e-06!GO:0046034;ATP metabolic process;8.62671686789225e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.80697147036469e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.80697147036469e-06!GO:0009141;nucleoside triphosphate metabolic process;9.06763060184486e-06!GO:0065008;regulation of biological quality;9.17564134883508e-06!GO:0019787;small conjugating protein ligase activity;9.17975906140846e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.17975906140846e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.17975906140846e-06!GO:0008654;phospholipid biosynthetic process;1.11451889600466e-05!GO:0000096;sulfur amino acid metabolic process;1.16632877159741e-05!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;1.16931180678486e-05!GO:0019867;outer membrane;1.32462879980598e-05!GO:0016604;nuclear body;1.32462879980598e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.4556469473175e-05!GO:0019439;aromatic compound catabolic process;1.47010465759733e-05!GO:0016044;membrane organization and biogenesis;1.47662364682961e-05!GO:0065002;intracellular protein transport across a membrane;1.5059648811443e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.58641802361849e-05!GO:0016064;immunoglobulin mediated immune response;1.73928695806027e-05!GO:0042221;response to chemical stimulus;1.78185524046806e-05!GO:0031968;organelle outer membrane;1.80213846159463e-05!GO:0003714;transcription corepressor activity;1.89728320908165e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.93939772730262e-05!GO:0044440;endosomal part;2.00014458255171e-05!GO:0010008;endosome membrane;2.00014458255171e-05!GO:0019724;B cell mediated immunity;2.13149062507086e-05!GO:0019899;enzyme binding;2.28700527887141e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.34751834479359e-05!GO:0031252;leading edge;2.40939931543788e-05!GO:0000278;mitotic cell cycle;2.52629964092019e-05!GO:0022402;cell cycle process;2.58539550274178e-05!GO:0006643;membrane lipid metabolic process;2.76648682369605e-05!GO:0006366;transcription from RNA polymerase II promoter;3.07102388531385e-05!GO:0005741;mitochondrial outer membrane;3.07289554944401e-05!GO:0016853;isomerase activity;3.44101256162792e-05!GO:0048475;coated membrane;3.49011209143647e-05!GO:0030117;membrane coat;3.49011209143647e-05!GO:0006790;sulfur metabolic process;3.56221660269295e-05!GO:0042802;identical protein binding;3.76856194808117e-05!GO:0006779;porphyrin biosynthetic process;3.93105529527224e-05!GO:0033014;tetrapyrrole biosynthetic process;3.93105529527224e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.17450906034139e-05!GO:0015399;primary active transmembrane transporter activity;4.17450906034139e-05!GO:0009064;glutamine family amino acid metabolic process;4.4584360105393e-05!GO:0005798;Golgi-associated vesicle;5.07765543377644e-05!GO:0006487;protein amino acid N-linked glycosylation;6.18992907554454e-05!GO:0015918;sterol transport;6.18992907554454e-05!GO:0030301;cholesterol transport;6.18992907554454e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.73364654629971e-05!GO:0010467;gene expression;6.7777200994575e-05!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;7.15586478765987e-05!GO:0006879;cellular iron ion homeostasis;7.32538386168897e-05!GO:0055072;iron ion homeostasis;7.32538386168897e-05!GO:0031324;negative regulation of cellular metabolic process;7.35233303269225e-05!GO:0003924;GTPase activity;7.63927646192579e-05!GO:0022890;inorganic cation transmembrane transporter activity;8.62864331054122e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.46054844399828e-05!GO:0007005;mitochondrion organization and biogenesis;9.60179774657963e-05!GO:0000139;Golgi membrane;9.6147403027958e-05!GO:0016567;protein ubiquitination;0.000100895628451525!GO:0006613;cotranslational protein targeting to membrane;0.000105984694283976!GO:0016881;acid-amino acid ligase activity;0.000115595225814863!GO:0019842;vitamin binding;0.000116368214832446!GO:0031960;response to corticosteroid stimulus;0.000116368214832446!GO:0000786;nucleosome;0.000120512977424485!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000122562865207357!GO:0006974;response to DNA damage stimulus;0.000122562865207357!GO:0004298;threonine endopeptidase activity;0.000123762532655301!GO:0006783;heme biosynthetic process;0.00013327463919547!GO:0044427;chromosomal part;0.000133417439814143!GO:0032446;protein modification by small protein conjugation;0.000138594509598605!GO:0009069;serine family amino acid metabolic process;0.000142904340472143!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000152980773371241!GO:0042157;lipoprotein metabolic process;0.000174708902367069!GO:0005694;chromosome;0.000181530738879592!GO:0046983;protein dimerization activity;0.000196198091507614!GO:0006644;phospholipid metabolic process;0.000196715866191177!GO:0008361;regulation of cell size;0.000196715866191177!GO:0009605;response to external stimulus;0.000198803780450064!GO:0030867;rough endoplasmic reticulum membrane;0.000209251296948607!GO:0051540;metal cluster binding;0.000210796976345966!GO:0051536;iron-sulfur cluster binding;0.000210796976345966!GO:0009892;negative regulation of metabolic process;0.000210796976345966!GO:0033116;ER-Golgi intermediate compartment membrane;0.000210796976345966!GO:0005762;mitochondrial large ribosomal subunit;0.000218444731681354!GO:0000315;organellar large ribosomal subunit;0.000218444731681354!GO:0000314;organellar small ribosomal subunit;0.000225004268570469!GO:0005763;mitochondrial small ribosomal subunit;0.000225004268570469!GO:0051726;regulation of cell cycle;0.00022924797952769!GO:0016607;nuclear speck;0.000236220466462548!GO:0016564;transcription repressor activity;0.000236220466462548!GO:0042060;wound healing;0.000241006258537434!GO:0045454;cell redox homeostasis;0.000245240728623633!GO:0003697;single-stranded DNA binding;0.000251704176005079!GO:0000074;regulation of progression through cell cycle;0.000253840057962679!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000265520275215717!GO:0008286;insulin receptor signaling pathway;0.000267214610453111!GO:0030133;transport vesicle;0.000267489402410625!GO:0048518;positive regulation of biological process;0.000269185772754525!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000275263052300592!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000275308395926973!GO:0030036;actin cytoskeleton organization and biogenesis;0.000276782129146512!GO:0043492;ATPase activity, coupled to movement of substances;0.000278158170176139!GO:0006897;endocytosis;0.000284842761147212!GO:0010324;membrane invagination;0.000284842761147212!GO:0050657;nucleic acid transport;0.00028651106076453!GO:0051236;establishment of RNA localization;0.00028651106076453!GO:0050658;RNA transport;0.00028651106076453!GO:0016769;transferase activity, transferring nitrogenous groups;0.000290158604764745!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000293012825759538!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000293466732742612!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000316866435496608!GO:0004812;aminoacyl-tRNA ligase activity;0.000316866435496608!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000316866435496608!GO:0007243;protein kinase cascade;0.000338851045116774!GO:0050878;regulation of body fluid levels;0.000348551198585418!GO:0000245;spliceosome assembly;0.000368747408185339!GO:0006403;RNA localization;0.000368747408185339!GO:0006957;complement activation, alternative pathway;0.000384013980406458!GO:0005791;rough endoplasmic reticulum;0.000386857421011679!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000387398753354698!GO:0005048;signal sequence binding;0.000396346921625869!GO:0016049;cell growth;0.000418008621078027!GO:0051384;response to glucocorticoid stimulus;0.000418008621078027!GO:0006260;DNA replication;0.000427181596275813!GO:0019843;rRNA binding;0.000433081936853277!GO:0048471;perinuclear region of cytoplasm;0.000454330956678582!GO:0046467;membrane lipid biosynthetic process;0.000459946938164316!GO:0006650;glycerophospholipid metabolic process;0.000482786171632531!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000510518012510256!GO:0019395;fatty acid oxidation;0.000518110190698658!GO:0043038;amino acid activation;0.000522267613656857!GO:0006418;tRNA aminoacylation for protein translation;0.000522267613656857!GO:0043039;tRNA aminoacylation;0.000522267613656857!GO:0006953;acute-phase response;0.000567157745252089!GO:0005774;vacuolar membrane;0.000574839003161065!GO:0005319;lipid transporter activity;0.000588720836305304!GO:0006635;fatty acid beta-oxidation;0.000606434085679605!GO:0065009;regulation of a molecular function;0.000651278620958632!GO:0006508;proteolysis;0.000671787530996588!GO:0051920;peroxiredoxin activity;0.000711348113102759!GO:0001558;regulation of cell growth;0.000730250174630176!GO:0043566;structure-specific DNA binding;0.00074081860910838!GO:0030170;pyridoxal phosphate binding;0.000752708150390396!GO:0030218;erythrocyte differentiation;0.000758774338111526!GO:0004576;oligosaccharyl transferase activity;0.000760722616223724!GO:0006007;glucose catabolic process;0.000776817229663005!GO:0009074;aromatic amino acid family catabolic process;0.000776817229663005!GO:0000151;ubiquitin ligase complex;0.000868957591545405!GO:0016746;transferase activity, transferring acyl groups;0.000894240580627544!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000901463175906245!GO:0005525;GTP binding;0.00094595832726792!GO:0048468;cell development;0.00094595832726792!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000962649690020144!GO:0006749;glutathione metabolic process;0.000994395764251717!GO:0043623;cellular protein complex assembly;0.0010022114054928!GO:0042254;ribosome biogenesis and assembly;0.00102524254611293!GO:0044272;sulfur compound biosynthetic process;0.00104653847749242!GO:0006525;arginine metabolic process;0.00109193961823086!GO:0015036;disulfide oxidoreductase activity;0.00111899088414754!GO:0006417;regulation of translation;0.0011430388044717!GO:0008250;oligosaccharyl transferase complex;0.00118025421588317!GO:0046394;carboxylic acid biosynthetic process;0.00120752323207141!GO:0016053;organic acid biosynthetic process;0.00120752323207141!GO:0001726;ruffle;0.00122608764903522!GO:0006720;isoprenoid metabolic process;0.00125267852539269!GO:0002449;lymphocyte mediated immunity;0.00125267852539269!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00125267852539269!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00125267852539269!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00125267852539269!GO:0005765;lysosomal membrane;0.00127440617569851!GO:0001889;liver development;0.00127440617569851!GO:0046364;monosaccharide biosynthetic process;0.00127440617569851!GO:0046165;alcohol biosynthetic process;0.00127440617569851!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00128627913081013!GO:0015002;heme-copper terminal oxidase activity;0.00128627913081013!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00128627913081013!GO:0004129;cytochrome-c oxidase activity;0.00128627913081013!GO:0043284;biopolymer biosynthetic process;0.00128627913081013!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00134975314528014!GO:0009309;amine biosynthetic process;0.00136493456413556!GO:0051539;4 iron, 4 sulfur cluster binding;0.00137400182209099!GO:0002443;leukocyte mediated immunity;0.00138902623536261!GO:0051427;hormone receptor binding;0.00148416513209813!GO:0044271;nitrogen compound biosynthetic process;0.00150442827752382!GO:0044438;microbody part;0.00158650278221512!GO:0044439;peroxisomal part;0.00158650278221512!GO:0051028;mRNA transport;0.00169769606258195!GO:0006810;transport;0.00171116491989604!GO:0007040;lysosome organization and biogenesis;0.00179423063766024!GO:0051659;maintenance of mitochondrion localization;0.00181201432640561!GO:0051657;maintenance of organelle localization;0.00181201432640561!GO:0009991;response to extracellular stimulus;0.00183029037750136!GO:0044437;vacuolar part;0.00188607440736529!GO:0000097;sulfur amino acid biosynthetic process;0.00189339595675161!GO:0006954;inflammatory response;0.00193641992246308!GO:0001666;response to hypoxia;0.00202765740352552!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0020689387244189!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00215429311237777!GO:0002684;positive regulation of immune system process;0.00216788824552415!GO:0007264;small GTPase mediated signal transduction;0.00219500186265626!GO:0006558;L-phenylalanine metabolic process;0.00223689069041!GO:0006559;L-phenylalanine catabolic process;0.00223689069041!GO:0000050;urea cycle;0.00228297238383378!GO:0043603;amide metabolic process;0.00228297238383378!GO:0019627;urea metabolic process;0.00228297238383378!GO:0008092;cytoskeletal protein binding;0.00228969780881419!GO:0016408;C-acyltransferase activity;0.00229174943360632!GO:0009165;nucleotide biosynthetic process;0.00230685801215514!GO:0009081;branched chain family amino acid metabolic process;0.00230803632841129!GO:0031647;regulation of protein stability;0.00231929790720192!GO:0009889;regulation of biosynthetic process;0.00242441764300386!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00245900967983191!GO:0031326;regulation of cellular biosynthetic process;0.00249114291873326!GO:0035257;nuclear hormone receptor binding;0.0025029222571236!GO:0030132;clathrin coat of coated pit;0.00250351092877614!GO:0018193;peptidyl-amino acid modification;0.0025103411136513!GO:0000041;transition metal ion transport;0.0025103411136513!GO:0006725;aromatic compound metabolic process;0.0025103411136513!GO:0030029;actin filament-based process;0.00252142927486819!GO:0019319;hexose biosynthetic process;0.00261496845284076!GO:0030176;integral to endoplasmic reticulum membrane;0.00270561480816232!GO:0043681;protein import into mitochondrion;0.0027211983249244!GO:0018196;peptidyl-asparagine modification;0.00276999068618722!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00276999068618722!GO:0051168;nuclear export;0.00292448433498842!GO:0051234;establishment of localization;0.00299741490362435!GO:0031667;response to nutrient levels;0.00306848042869188!GO:0045786;negative regulation of progression through cell cycle;0.00309730939939607!GO:0002682;regulation of immune system process;0.00318326449670159!GO:0005507;copper ion binding;0.00321455624830411!GO:0006281;DNA repair;0.00322931194839163!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00322931194839163!GO:0031903;microbody membrane;0.00322931194839163!GO:0005778;peroxisomal membrane;0.00322931194839163!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00322931194839163!GO:0006959;humoral immune response;0.00324215740680738!GO:0051329;interphase of mitotic cell cycle;0.00327988052595914!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.00328208016997154!GO:0051287;NAD binding;0.00329498103874361!GO:0050778;positive regulation of immune response;0.00329773460302073!GO:0005885;Arp2/3 protein complex;0.00343983866658812!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00350944316650567!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00350944316650567!GO:0016830;carbon-carbon lyase activity;0.00356702347111976!GO:0031902;late endosome membrane;0.00358272538017663!GO:0005579;membrane attack complex;0.00359725451526424!GO:0003713;transcription coactivator activity;0.00361540653910542!GO:0016836;hydro-lyase activity;0.00367232823026439!GO:0006414;translational elongation;0.00368066649781117!GO:0016835;carbon-oxygen lyase activity;0.00370624097624437!GO:0051179;localization;0.00421113380802545!GO:0030134;ER to Golgi transport vesicle;0.0042123692561357!GO:0008299;isoprenoid biosynthetic process;0.0042123692561357!GO:0032561;guanyl ribonucleotide binding;0.0042123692561357!GO:0019001;guanyl nucleotide binding;0.0042123692561357!GO:0002252;immune effector process;0.00422273033236851!GO:0016568;chromatin modification;0.00433991399345274!GO:0008483;transaminase activity;0.00438848740323076!GO:0016791;phosphoric monoester hydrolase activity;0.00453741253490701!GO:0046474;glycerophospholipid biosynthetic process;0.00456345872126181!GO:0044275;cellular carbohydrate catabolic process;0.00471600997843388!GO:0006518;peptide metabolic process;0.00481921170539428!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00488337086649256!GO:0051235;maintenance of localization;0.00490554861245943!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00493337861730255!GO:0006672;ceramide metabolic process;0.00494039472791469!GO:0008415;acyltransferase activity;0.00503106933050909!GO:0022403;cell cycle phase;0.00503887223665523!GO:0006612;protein targeting to membrane;0.00519695897814791!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.00520731451123328!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00522954938086756!GO:0007033;vacuole organization and biogenesis;0.00525307197897011!GO:0019748;secondary metabolic process;0.00545046586877402!GO:0048487;beta-tubulin binding;0.0054728020292343!GO:0030127;COPII vesicle coat;0.00550428146424598!GO:0012507;ER to Golgi transport vesicle membrane;0.00550428146424598!GO:0006534;cysteine metabolic process;0.00555014912213485!GO:0004386;helicase activity;0.00566394421367031!GO:0008430;selenium binding;0.00568600650796752!GO:0043488;regulation of mRNA stability;0.00568825953164312!GO:0043487;regulation of RNA stability;0.00568825953164312!GO:0006595;polyamine metabolic process;0.00584356752548303!GO:0010035;response to inorganic substance;0.00588813502339785!GO:0000087;M phase of mitotic cell cycle;0.00589019914471058!GO:0008026;ATP-dependent helicase activity;0.0059636725320214!GO:0007067;mitosis;0.00624509907591119!GO:0040008;regulation of growth;0.00624509907591119!GO:0009112;nucleobase metabolic process;0.00634159755949242!GO:0004300;enoyl-CoA hydratase activity;0.00636080239206813!GO:0006527;arginine catabolic process;0.00650224521723514!GO:0009100;glycoprotein metabolic process;0.00670118608264465!GO:0006399;tRNA metabolic process;0.00685268910402246!GO:0051325;interphase;0.00699577338014283!GO:0003724;RNA helicase activity;0.00702692888731677!GO:0006694;steroid biosynthetic process;0.00740949598581838!GO:0016741;transferase activity, transferring one-carbon groups;0.00751715801034132!GO:0050790;regulation of catalytic activity;0.00760442813160717!GO:0006818;hydrogen transport;0.00766964780919473!GO:0030658;transport vesicle membrane;0.00791327003534911!GO:0008139;nuclear localization sequence binding;0.0079649823209621!GO:0043021;ribonucleoprotein binding;0.00801525685800868!GO:0050776;regulation of immune response;0.00808317622143621!GO:0003746;translation elongation factor activity;0.00808317622143621!GO:0048522;positive regulation of cellular process;0.00828235375246803!GO:0006767;water-soluble vitamin metabolic process;0.00828235375246803!GO:0006096;glycolysis;0.00838256751676289!GO:0006826;iron ion transport;0.00843586723152489!GO:0046519;sphingoid metabolic process;0.00846022437219886!GO:0031072;heat shock protein binding;0.00848242356394584!GO:0050660;FAD binding;0.00853521409594186!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00867394350951528!GO:0005667;transcription factor complex;0.00874421614681118!GO:0015992;proton transport;0.00875441398601279!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.00879162205277232!GO:0006740;NADPH regeneration;0.00882562510270897!GO:0006098;pentose-phosphate shunt;0.00882562510270897!GO:0005577;fibrinogen complex;0.0089590296360892!GO:0045792;negative regulation of cell size;0.00905926071046641!GO:0006611;protein export from nucleus;0.00912393563433847!GO:0051252;regulation of RNA metabolic process;0.00921380887873735!GO:0006733;oxidoreduction coenzyme metabolic process;0.00933168345586688!GO:0004177;aminopeptidase activity;0.00943135856824986!GO:0016051;carbohydrate biosynthetic process;0.00952335463761082!GO:0003729;mRNA binding;0.00952819032983567!GO:0009607;response to biotic stimulus;0.00967705232314442!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00982403567712437!GO:0005769;early endosome;0.00983308691806346!GO:0002018;renin-angiotensin regulation of aldosterone production;0.00983308691806346!GO:0048143;astrocyte activation;0.00983308691806346!GO:0046622;positive regulation of organ growth;0.00983308691806346!GO:0031701;angiotensin receptor binding;0.00983308691806346!GO:0031703;type 2 angiotensin receptor binding;0.00983308691806346!GO:0045723;positive regulation of fatty acid biosynthetic process;0.00983308691806346!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.00983308691806346!GO:0042756;drinking behavior;0.00983308691806346!GO:0002019;angiotensin mediated regulation of renal output;0.00983308691806346!GO:0031702;type 1 angiotensin receptor binding;0.00983308691806346!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.00983308691806346!GO:0050811;GABA receptor binding;0.00992763317154682!GO:0030308;negative regulation of cell growth;0.00992763317154682!GO:0030027;lamellipodium;0.0100325968924468!GO:0030433;ER-associated protein catabolic process;0.0101826027914244!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0101826027914244!GO:0016481;negative regulation of transcription;0.0103757539640539!GO:0006090;pyruvate metabolic process;0.0105169452942144!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0105724087303857!GO:0006364;rRNA processing;0.0106529651180487!GO:0003995;acyl-CoA dehydrogenase activity;0.0109109107049863!GO:0016840;carbon-nitrogen lyase activity;0.0109746074032052!GO:0002250;adaptive immune response;0.011067398323993!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.011067398323993!GO:0006633;fatty acid biosynthetic process;0.0111623083385658!GO:0005905;coated pit;0.0111689875861252!GO:0033344;cholesterol efflux;0.0112727737028431!GO:0008632;apoptotic program;0.0115156534499607!GO:0055088;lipid homeostasis;0.0115156534499607!GO:0030663;COPI coated vesicle membrane;0.0118685370085411!GO:0030126;COPI vesicle coat;0.0118685370085411!GO:0051301;cell division;0.0118685370085411!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0121588501432267!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.0128118766287494!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.012828355106868!GO:0045947;negative regulation of translational initiation;0.0128790217734055!GO:0046365;monosaccharide catabolic process;0.0129540680741147!GO:0030139;endocytic vesicle;0.0132333560423644!GO:0006607;NLS-bearing substrate import into nucleus;0.013447796421758!GO:0016563;transcription activator activity;0.013447796421758!GO:0016052;carbohydrate catabolic process;0.0137018753161583!GO:0009083;branched chain family amino acid catabolic process;0.0138870681094793!GO:0015035;protein disulfide oxidoreductase activity;0.0139565422980885!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0147415954996175!GO:0006572;tyrosine catabolic process;0.0147677483130172!GO:0009066;aspartate family amino acid metabolic process;0.0147677483130172!GO:0043065;positive regulation of apoptosis;0.0147677483130172!GO:0042627;chylomicron;0.0148744642903214!GO:0006658;phosphatidylserine metabolic process;0.0149651667586881!GO:0042594;response to starvation;0.0150340370746545!GO:0009065;glutamine family amino acid catabolic process;0.0150737707646424!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0151396395200198!GO:0016072;rRNA metabolic process;0.0155243064542002!GO:0000059;protein import into nucleus, docking;0.0156864803837281!GO:0030660;Golgi-associated vesicle membrane;0.0158127613687517!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158127613687517!GO:0005758;mitochondrial intermembrane space;0.0158127613687517!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0160102166903882!GO:0030193;regulation of blood coagulation;0.0160250517103836!GO:0048500;signal recognition particle;0.016164866998121!GO:0046912;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;0.0163849970310877!GO:0007242;intracellular signaling cascade;0.0164938820278074!GO:0031970;organelle envelope lumen;0.0165095557594514!GO:0046164;alcohol catabolic process;0.0165518217844441!GO:0030569;chymotrypsin inhibitor activity;0.0167620862110026!GO:0003756;protein disulfide isomerase activity;0.0169306302731356!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0169306302731356!GO:0035258;steroid hormone receptor binding;0.0170090547641271!GO:0042440;pigment metabolic process;0.0170090547641271!GO:0006094;gluconeogenesis;0.0171446523821427!GO:0006402;mRNA catabolic process;0.0172360055673348!GO:0017166;vinculin binding;0.0177746576885324!GO:0031301;integral to organelle membrane;0.0178807998488237!GO:0051248;negative regulation of protein metabolic process;0.0179703816581398!GO:0005637;nuclear inner membrane;0.0179703816581398!GO:0003690;double-stranded DNA binding;0.0181326891615834!GO:0043068;positive regulation of programmed cell death;0.018634489542582!GO:0000082;G1/S transition of mitotic cell cycle;0.0188947262528062!GO:0005684;U2-dependent spliceosome;0.0189792538006335!GO:0019320;hexose catabolic process;0.0190105071622033!GO:0006516;glycoprotein catabolic process;0.0191172383306816!GO:0030659;cytoplasmic vesicle membrane;0.0192078203787197!GO:0030100;regulation of endocytosis;0.0192360016951612!GO:0006022;aminoglycan metabolic process;0.0194250668136729!GO:0009725;response to hormone stimulus;0.0206998297343109!GO:0015682;ferric iron transport;0.0209367574200874!GO:0015091;ferric iron transmembrane transporter activity;0.0209367574200874!GO:0031643;positive regulation of myelination;0.0209367574200874!GO:0016859;cis-trans isomerase activity;0.0209367574200874!GO:0030118;clathrin coat;0.0219895025266456!GO:0051651;maintenance of cellular localization;0.0222179136158136!GO:0006509;membrane protein ectodomain proteolysis;0.0226158561419401!GO:0033619;membrane protein proteolysis;0.0226158561419401!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228839079608672!GO:0050818;regulation of coagulation;0.0230076212980438!GO:0004364;glutathione transferase activity;0.0230946252839697!GO:0050748;negative regulation of lipoprotein metabolic process;0.0231577233913967!GO:0016645;oxidoreductase activity, acting on the CH-NH group of donors;0.0231834245377744!GO:0051336;regulation of hydrolase activity;0.0236544706663588!GO:0030212;hyaluronan metabolic process;0.0239092118114153!GO:0008168;methyltransferase activity;0.0239927839848243!GO:0032508;DNA duplex unwinding;0.0241553803981519!GO:0032392;DNA geometric change;0.0241553803981519!GO:0015923;mannosidase activity;0.0242174287296784!GO:0046489;phosphoinositide biosynthetic process;0.024637018083622!GO:0007015;actin filament organization;0.0249706339695042!GO:0006984;ER-nuclear signaling pathway;0.0250816650349466!GO:0006642;triacylglycerol mobilization;0.0251696236571957!GO:0006839;mitochondrial transport;0.0251834990108251!GO:0031327;negative regulation of cellular biosynthetic process;0.0252004981447853!GO:0006563;L-serine metabolic process;0.0252946517424985!GO:0019216;regulation of lipid metabolic process;0.0253468491942301!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0256055488873285!GO:0042542;response to hydrogen peroxide;0.0260280254400687!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0260430520238751!GO:0008154;actin polymerization and/or depolymerization;0.0264807512008915!GO:0008186;RNA-dependent ATPase activity;0.0268130120850713!GO:0016877;ligase activity, forming carbon-sulfur bonds;0.0270471032297341!GO:0051537;2 iron, 2 sulfur cluster binding;0.0273757052086176!GO:0051087;chaperone binding;0.0277193747721212!GO:0030099;myeloid cell differentiation;0.0280432931670633!GO:0016197;endosome transport;0.0291349063486147!GO:0010033;response to organic substance;0.0291707356344056!GO:0000303;response to superoxide;0.0291928420971318!GO:0046904;calcium oxalate binding;0.0292204600345943!GO:0030568;plasmin inhibitor activity;0.0292204600345943!GO:0030137;COPI-coated vesicle;0.0294896632952819!GO:0051017;actin filament bundle formation;0.0295817655307417!GO:0007265;Ras protein signal transduction;0.0296322357729513!GO:0030145;manganese ion binding;0.0298154515521892!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0298388301267761!GO:0045047;protein targeting to ER;0.0298388301267761!GO:0005869;dynactin complex;0.0311842024444287!GO:0050749;apolipoprotein E receptor binding;0.0311978793401094!GO:0031406;carboxylic acid binding;0.0314026219990335!GO:0006766;vitamin metabolic process;0.0315492019795591!GO:0030203;glycosaminoglycan metabolic process;0.0316025394222147!GO:0006739;NADP metabolic process;0.0319543963556832!GO:0006081;aldehyde metabolic process;0.0319567461448041!GO:0005792;microsome;0.0327951485588919!GO:0006769;nicotinamide metabolic process;0.033057102283818!GO:0050821;protein stabilization;0.0330718349781424!GO:0004601;peroxidase activity;0.0330718349781424!GO:0016684;oxidoreductase activity, acting on peroxide as acceptor;0.0330718349781424!GO:0006268;DNA unwinding during replication;0.0335425816920335!GO:0030384;phosphoinositide metabolic process;0.0335425816920335!GO:0012506;vesicle membrane;0.0336317805389762!GO:0042598;vesicular fraction;0.0338755888711498!GO:0005521;lamin binding;0.0341988393914385!GO:0045926;negative regulation of growth;0.034377017494789!GO:0051101;regulation of DNA binding;0.035590585955572!GO:0030503;regulation of cell redox homeostasis;0.0357246556506064!GO:0006892;post-Golgi vesicle-mediated transport;0.0360347965567885!GO:0042158;lipoprotein biosynthetic process;0.0360347965567885!GO:0000302;response to reactive oxygen species;0.0361700575227297!GO:0051346;negative regulation of hydrolase activity;0.0361700575227297!GO:0003711;transcription elongation regulator activity;0.0365908588831117!GO:0016860;intramolecular oxidoreductase activity;0.0369923401184975!GO:0005784;translocon complex;0.0374557628288673!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.037462179777825!GO:0015886;heme transport;0.0378872239599196!GO:0042219;amino acid derivative catabolic process;0.0389441091139162!GO:0016831;carboxy-lyase activity;0.0397760532039851!GO:0006541;glutamine metabolic process;0.0400608578153021!GO:0008201;heparin binding;0.040182386231283!GO:0008629;induction of apoptosis by intracellular signals;0.040365641390328!GO:0008320;protein transmembrane transporter activity;0.040368634495614!GO:0016788;hydrolase activity, acting on ester bonds;0.0404517420237012!GO:0030911;TPR domain binding;0.0412763150178065!GO:0031300;intrinsic to organelle membrane;0.0418759756924461!GO:0008312;7S RNA binding;0.0425173133425664!GO:0042803;protein homodimerization activity;0.0429847030793306!GO:0018106;peptidyl-histidine phosphorylation;0.0430957455968173!GO:0016748;succinyltransferase activity;0.0430957455968173!GO:0016810;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;0.0430957455968173!GO:0006026;aminoglycan catabolic process;0.0433900308106675!GO:0006027;glycosaminoglycan catabolic process;0.0433900308106675!GO:0005584;collagen type I;0.0436586967730231!GO:0030140;trans-Golgi network transport vesicle;0.0438710039851497!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0444285057944743!GO:0030128;clathrin coat of endocytic vesicle;0.044839706441123!GO:0030669;clathrin-coated endocytic vesicle membrane;0.044839706441123!GO:0030122;AP-2 adaptor complex;0.044839706441123!GO:0016453;C-acetyltransferase activity;0.0450505068042338!GO:0009116;nucleoside metabolic process;0.0453657669958633!GO:0045045;secretory pathway;0.0455290986132295!GO:0051881;regulation of mitochondrial membrane potential;0.0456544355898692!GO:0030125;clathrin vesicle coat;0.0456544355898692!GO:0030665;clathrin coated vesicle membrane;0.0456544355898692!GO:0000305;response to oxygen radical;0.0457036039274804!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0458723139437893!GO:0009070;serine family amino acid biosynthetic process;0.0458723139437893!GO:0035035;histone acetyltransferase binding;0.0458723139437893!GO:0019362;pyridine nucleotide metabolic process;0.0458723139437893!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0458779117069979!GO:0009101;glycoprotein biosynthetic process;0.0458779117069979!GO:0030195;negative regulation of blood coagulation;0.0462245130044289!GO:0030508;thiol-disulfide exchange intermediate activity;0.0464626179875461!GO:0006596;polyamine biosynthetic process;0.0469321665087965!GO:0004680;casein kinase activity;0.0470214185961319!GO:0016584;nucleosome positioning;0.0481623827390309!GO:0005938;cell cortex;0.0481758136206223!GO:0006891;intra-Golgi vesicle-mediated transport;0.0481758136206223!GO:0004873;asialoglycoprotein receptor activity;0.0487070238038853!GO:0055092;sterol homeostasis;0.0488345513270401!GO:0042632;cholesterol homeostasis;0.0488345513270401!GO:0006555;methionine metabolic process;0.04912426284416!GO:0051716;cellular response to stimulus;0.0493931902331933!GO:0045603;positive regulation of endothelial cell differentiation;0.0496589872155483 | |||
|sample_id=10086 | |sample_id=10086 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522 | |top_motifs=HNF1A:5.67921307299;HNF4A_NR2F1,2:5.0197101017;GATA6:4.29966717159;NR6A1:3.38984442392;TBP:3.10183761925;MTF1:2.84042109213;FOX{F1,F2,J1}:2.70562200009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.5444753983;FOXA2:2.51444929383;STAT2,4,6:2.46593951092;CUX2:1.81594844491;RORA:1.78020715954;AR:1.76588412018;ZNF423:1.37897226424;TFCP2:1.27751408833;FOXM1:1.24721733004;PPARG:1.24601240837;MYOD1:1.15178948239;STAT5{A,B}:1.09221924263;CEBPA,B_DDIT3:1.04377664293;MAZ:1.0123437096;POU6F1:0.981311739123;FOX{D1,D2}:0.967468404109;HIF1A:0.930283269522;GCM1,2:0.869548746571;SP1:0.845237083276;RBPJ:0.829960547658;GFI1:0.764679604783;TLX2:0.763484074389;HIC1:0.715258463662;bHLH_family:0.698730869108;ZNF148:0.695089831959;TFAP4:0.629267380427;MED-1{core}:0.560596812565;GLI1..3:0.555765638126;EVI1:0.542815834476;NFY{A,B,C}:0.537759244692;PAX1,9:0.537653713477;PAX5:0.524184963637;SNAI1..3:0.515576656589;LMO2:0.496148717634;POU2F1..3:0.473661615216;HLF:0.470323442492;XCPE1{core}:0.442474068732;EBF1:0.435287952968;ZEB1:0.414463614976;FOXL1:0.406757691797;FOXP3:0.404845316944;SMAD1..7,9:0.399478434223;RXR{A,B,G}:0.368663511619;NR5A1,2:0.364991369633;T:0.341295262943;DBP:0.340878334103;NR1H4:0.332541091948;LHX3,4:0.324702353542;SOX{8,9,10}:0.286237580523;TAL1_TCF{3,4,12}:0.278258116727;ATF2:0.25745799481;AIRE:0.25646210031;ALX4:0.243882377033;TFAP2{A,C}:0.214169541974;VSX1,2:0.13870147596;TOPORS:0.12730224909;HOX{A5,B5}:0.125891769075;NKX2-1,4:0.111394310138;HES1:0.11054726245;BPTF:0.108795344752;EGR1..3:0.102985315219;HAND1,2:0.101491544743;PATZ1:0.0905206799115;ESRRA:0.0872582650861;ATF6:0.0757324577088;PAX2:0.0700336578913;RXRA_VDR{dimer}:0.067102655638;MYFfamily:0.0665582996659;PBX1:0.050075156599;HMGA1,2:0.0304804079853;SPIB:-0.00662619758473;NKX3-2:-0.00682225960263;E2F1..5:-0.0336086723258;PAX6:-0.0700616707308;NFIL3:-0.0808187798672;SRF:-0.0869181330204;ATF5_CREB3:-0.0910338630412;TLX1..3_NFIC{dimer}:-0.0961585305492;ONECUT1,2:-0.0986907281201;IRF7:-0.114527040728;RREB1:-0.126130559715;NFE2L2:-0.132677793319;NFE2:-0.13429139326;FOX{I1,J2}:-0.149443090757;ATF4:-0.151818114015;MEF2{A,B,C,D}:-0.15798077784;ZIC1..3:-0.160010722402;FOXP1:-0.179228060999;EP300:-0.183461684406;ETS1,2:-0.195408376144;MYB:-0.210106119766;NHLH1,2:-0.217900653712;SPI1:-0.226798919064;HOXA9_MEIS1:-0.232502159235;REST:-0.234275873036;MAFB:-0.235812822923;MTE{core}:-0.241925351561;MYBL2:-0.259842907609;SREBF1,2:-0.265792372184;ADNP_IRX_SIX_ZHX:-0.296509349432;GTF2A1,2:-0.302324075116;CREB1:-0.319107706219;NFKB1_REL_RELA:-0.32408285643;UFEwm:-0.324905176655;IRF1,2:-0.332507312514;TGIF1:-0.336546990232;TFAP2B:-0.36079594344;NFE2L1:-0.369356601987;KLF4:-0.433634918068;JUN:-0.440703414352;BREu{core}:-0.4530937615;TBX4,5:-0.455974321597;SOX5:-0.473552720869;NANOG{mouse}:-0.483681689538;GTF2I:-0.504245356997;POU3F1..4:-0.513371201297;BACH2:-0.513410033463;RUNX1..3:-0.534491655807;IKZF2:-0.552752447267;ELF1,2,4:-0.59282501573;NFIX:-0.600797266441;POU1F1:-0.606624227254;TP53:-0.617888804565;ZNF238:-0.619260737452;ZNF143:-0.644530558189;OCT4_SOX2{dimer}:-0.644813816226;GZF1:-0.647798016095;IKZF1:-0.657556264199;FOS_FOS{B,L1}_JUN{B,D}:-0.67635121757;ARID5B:-0.702452046385;TEAD1:-0.757866142497;CRX:-0.769650152343;PDX1:-0.786800921117;MZF1:-0.793772364653;GFI1B:-0.797252283794;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799451104071;NANOG:-0.802900256399;FOXQ1:-0.80676788913;ZFP161:-0.823083818154;FOSL2:-0.826097924188;AHR_ARNT_ARNT2:-0.828242299671;FOXD3:-0.862977466559;NKX2-3_NKX2-5:-0.883758702385;NFATC1..3:-0.891131074228;SOX17:-0.893644261134;EN1,2:-0.908255574844;FOXO1,3,4:-0.960385340151;ALX1:-1.0014103737;GATA4:-1.00858612215;PAX3,7:-1.04040320989;POU5F1:-1.06448494867;HOX{A4,D4}:-1.07339379187;HMX1:-1.10873410741;HOX{A6,A7,B6,B7}:-1.1189107126;FOXN1:-1.12161539184;LEF1_TCF7_TCF7L1,2:-1.12451447584;NR3C1:-1.13832300423;YY1:-1.15377751563;DMAP1_NCOR{1,2}_SMARC:-1.1898818562;ZBTB16:-1.19937153023;SOX2:-1.20734105598;ESR1:-1.25304955806;ZBTB6:-1.26098040342;NRF1:-1.26838854184;PAX4:-1.29546813621;XBP1:-1.30045896132;SPZ1:-1.33351838421;ZNF384:-1.36578384436;TFDP1:-1.42996860817;RFX1:-1.43301372986;PRRX1,2:-1.45159842225;CDX1,2,4:-1.46066574572;PRDM1:-1.50173205534;HSF1,2:-1.50197045971;STAT1,3:-1.60742252934;NKX3-1:-1.68620676187;RFX2..5_RFXANK_RFXAP:-1.74728195781;TEF:-1.80127956574;PITX1..3:-1.92345139679;CDC5L:-1.99103153716;HBP1_HMGB_SSRP1_UBTF:-2.05657574349;ELK1,4_GABP{A,B1}:-2.16706971621;NKX2-2,8:-2.5140220838;PAX8:-2.63194804562;NKX6-1,2:-2.94760728522 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10086-102B5;search_select_hide=table117:FF:10086-102B5 | |||
}} | }} | ||
Latest revision as of 12:21, 3 June 2020
| Name: | liver, fetal, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11798 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11798
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11798
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.464 |
| 10 | 10 | 0.879 |
| 100 | 100 | 0.253 |
| 101 | 101 | 0.372 |
| 102 | 102 | 0.209 |
| 103 | 103 | 0.185 |
| 104 | 104 | 0.153 |
| 105 | 105 | 0.303 |
| 106 | 106 | 0.00347 |
| 107 | 107 | 0.0209 |
| 108 | 108 | 0.606 |
| 109 | 109 | 0.185 |
| 11 | 11 | 0.113 |
| 110 | 110 | 0.686 |
| 111 | 111 | 0.962 |
| 112 | 112 | 0.174 |
| 113 | 113 | 5.36455e-4 |
| 114 | 114 | 0.289 |
| 115 | 115 | 0.628 |
| 116 | 116 | 0.493 |
| 117 | 117 | 0.734 |
| 118 | 118 | 0.401 |
| 119 | 119 | 0.0983 |
| 12 | 12 | 0.789 |
| 120 | 120 | 0.499 |
| 121 | 121 | 0.581 |
| 122 | 122 | 0.959 |
| 123 | 123 | 0.312 |
| 124 | 124 | 0.468 |
| 125 | 125 | 0.497 |
| 126 | 126 | 0.199 |
| 127 | 127 | 0.822 |
| 128 | 128 | 0.101 |
| 129 | 129 | 0.559 |
| 13 | 13 | 0.193 |
| 130 | 130 | 0.0344 |
| 131 | 131 | 0.42 |
| 132 | 132 | 0.265 |
| 133 | 133 | 0.506 |
| 134 | 134 | 0.515 |
| 135 | 135 | 0.892 |
| 136 | 136 | 0.49 |
| 137 | 137 | 0.336 |
| 138 | 138 | 0.995 |
| 139 | 139 | 0.24 |
| 14 | 14 | 0.849 |
| 140 | 140 | 0.704 |
| 141 | 141 | 0.0406 |
| 142 | 142 | 0.231 |
| 143 | 143 | 0.0633 |
| 144 | 144 | 0.459 |
| 145 | 145 | 0.189 |
| 146 | 146 | 0.339 |
| 147 | 147 | 0.413 |
| 148 | 148 | 0.363 |
| 149 | 149 | 0.238 |
| 15 | 15 | 0.632 |
| 150 | 150 | 0.748 |
| 151 | 151 | 0.306 |
| 152 | 152 | 0.0478 |
| 153 | 153 | 0.685 |
| 154 | 154 | 0.364 |
| 155 | 155 | 0.0473 |
| 156 | 156 | 0.9 |
| 157 | 157 | 0.695 |
| 158 | 158 | 0.729 |
| 159 | 159 | 0.969 |
| 16 | 16 | 0.272 |
| 160 | 160 | 0.0134 |
| 161 | 161 | 0.971 |
| 162 | 162 | 0.197 |
| 163 | 163 | 0.437 |
| 164 | 164 | 0.654 |
| 165 | 165 | 0.0628 |
| 166 | 166 | 0.705 |
| 167 | 167 | 0.757 |
| 168 | 168 | 0.388 |
| 169 | 169 | 0.0199 |
| 17 | 17 | 0.355 |
| 18 | 18 | 0.93 |
| 19 | 19 | 0.0126 |
| 2 | 2 | 0.239 |
| 20 | 20 | 0.688 |
| 21 | 21 | 0.255 |
| 22 | 22 | 0.0596 |
| 23 | 23 | 0.114 |
| 24 | 24 | 0.793 |
| 25 | 25 | 0.621 |
| 26 | 26 | 0.307 |
| 27 | 27 | 0.64 |
| 28 | 28 | 0.663 |
| 29 | 29 | 0.712 |
| 3 | 3 | 0.576 |
| 30 | 30 | 0.332 |
| 31 | 31 | 0.303 |
| 32 | 32 | 0.0184 |
| 33 | 33 | 0.56 |
| 34 | 34 | 0.222 |
| 35 | 35 | 0.891 |
| 36 | 36 | 0.359 |
| 37 | 37 | 0.965 |
| 38 | 38 | 0.309 |
| 39 | 39 | 0.278 |
| 4 | 4 | 0.522 |
| 40 | 40 | 0.0064 |
| 41 | 41 | 0.415 |
| 42 | 42 | 0.949 |
| 43 | 43 | 0.152 |
| 44 | 44 | 6.86838e-4 |
| 45 | 45 | 0.0976 |
| 46 | 46 | 0.183 |
| 47 | 47 | 0.544 |
| 48 | 48 | 0.283 |
| 49 | 49 | 0.134 |
| 5 | 5 | 0.575 |
| 50 | 50 | 0.504 |
| 51 | 51 | 0.635 |
| 52 | 52 | 0.0436 |
| 53 | 53 | 0.794 |
| 54 | 54 | 0.402 |
| 55 | 55 | 0.519 |
| 56 | 56 | 0.462 |
| 57 | 57 | 0.81 |
| 58 | 58 | 0.43 |
| 59 | 59 | 0.0463 |
| 6 | 6 | 0.663 |
| 60 | 60 | 0.0203 |
| 61 | 61 | 0.631 |
| 62 | 62 | 0.315 |
| 63 | 63 | 0.479 |
| 64 | 64 | 0.27 |
| 65 | 65 | 0.102 |
| 66 | 66 | 0.605 |
| 67 | 67 | 0.222 |
| 68 | 68 | 0.767 |
| 69 | 69 | 0.155 |
| 7 | 7 | 0.0278 |
| 70 | 70 | 0.0553 |
| 71 | 71 | 0.291 |
| 72 | 72 | 0.668 |
| 73 | 73 | 0.0838 |
| 74 | 74 | 0.163 |
| 75 | 75 | 0.486 |
| 76 | 76 | 0.549 |
| 77 | 77 | 0.0496 |
| 78 | 78 | 0.078 |
| 79 | 79 | 0.957 |
| 8 | 8 | 0.224 |
| 80 | 80 | 0.784 |
| 81 | 81 | 0.978 |
| 82 | 82 | 0.657 |
| 83 | 83 | 0.759 |
| 84 | 84 | 0.276 |
| 85 | 85 | 0.232 |
| 86 | 86 | 0.848 |
| 87 | 87 | 0.656 |
| 88 | 88 | 0.584 |
| 89 | 89 | 0.287 |
| 9 | 9 | 0.479 |
| 90 | 90 | 0.745 |
| 91 | 91 | 0.278 |
| 92 | 92 | 0.214 |
| 93 | 93 | 0.528 |
| 94 | 94 | 0.302 |
| 95 | 95 | 0.557 |
| 96 | 96 | 0.149 |
| 97 | 97 | 0.475 |
| 98 | 98 | 0.736 |
| 99 | 99 | 0.139 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11798
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010086 human liver - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010086 (human liver - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
