FF:11574-120E8: Difference between revisions

Latest revision as of 18:10, 4 June 2020

Name:	Neurons, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12726
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	NA
age	NA
cell type	neuron
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3153
catalog number	SC1525
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005710

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12726		CAGE		DRX008376		DRR009248

Accession ID Hg19

Library id		BAM		CTSS
CNhs12726		DRZ000673		DRZ002058

Accession ID Hg38

Library id		BAM		CTSS
CNhs12726		DRZ012023		DRZ013408

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.369
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.106
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.187
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.0673
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0283
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.0673
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.011
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.316
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0507
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	1.099
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0562
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.299
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.125
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0016
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0673
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0673
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.012
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.12
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.365
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.177
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0673
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.125
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0673
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12726

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.908e-5
MA0003.1	MA0003.1	0.162
MA0004.1	MA0004.1	0.522
MA0006.1	MA0006.1	0.415
MA0007.1	MA0007.1	0.164
MA0009.1	MA0009.1	0.197
MA0014.1	MA0014.1	0.717
MA0017.1	MA0017.1	0.00251
MA0018.2	MA0018.2	0.00423
MA0019.1	MA0019.1	0.882
MA0024.1	MA0024.1	0.00413
MA0025.1	MA0025.1	0.509
MA0027.1	MA0027.1	0.138
MA0028.1	MA0028.1	0.945
MA0029.1	MA0029.1	0.0619
MA0030.1	MA0030.1	0.594
MA0031.1	MA0031.1	0.0882
MA0035.2	MA0035.2	0.0542
MA0038.1	MA0038.1	1.68336e-5
MA0039.2	MA0039.2	0.213
MA0040.1	MA0040.1	0.716
MA0041.1	MA0041.1	0.547
MA0042.1	MA0042.1	0.712
MA0043.1	MA0043.1	0.254
MA0046.1	MA0046.1	0.524
MA0047.2	MA0047.2	0.00491
MA0048.1	MA0048.1	0.659
MA0050.1	MA0050.1	3.71735e-7
MA0051.1	MA0051.1	0.0074
MA0052.1	MA0052.1	0.385
MA0055.1	MA0055.1	0.247
MA0057.1	MA0057.1	0.266
MA0058.1	MA0058.1	0.432
MA0059.1	MA0059.1	0.216
MA0060.1	MA0060.1	5.67641e-7
MA0061.1	MA0061.1	0.027
MA0062.2	MA0062.2	0.574
MA0065.2	MA0065.2	4.92644e-4
MA0066.1	MA0066.1	0.0534
MA0067.1	MA0067.1	0.664
MA0068.1	MA0068.1	0.00178
MA0069.1	MA0069.1	0.399
MA0070.1	MA0070.1	0.0122
MA0071.1	MA0071.1	0.07
MA0072.1	MA0072.1	0.748
MA0073.1	MA0073.1	0.453
MA0074.1	MA0074.1	0.208
MA0076.1	MA0076.1	0.361
MA0077.1	MA0077.1	0.0281
MA0078.1	MA0078.1	0.344
MA0079.2	MA0079.2	0.618
MA0080.2	MA0080.2	1.30342e-9
MA0081.1	MA0081.1	0.0676
MA0083.1	MA0083.1	0.994
MA0084.1	MA0084.1	0.117
MA0087.1	MA0087.1	0.677
MA0088.1	MA0088.1	0.381
MA0090.1	MA0090.1	0.105
MA0091.1	MA0091.1	0.47
MA0092.1	MA0092.1	0.873
MA0093.1	MA0093.1	0.58
MA0099.2	MA0099.2	1.23665e-9
MA0100.1	MA0100.1	0.297
MA0101.1	MA0101.1	0.0157
MA0102.2	MA0102.2	0.0208
MA0103.1	MA0103.1	0.096
MA0104.2	MA0104.2	0.805
MA0105.1	MA0105.1	0.0151
MA0106.1	MA0106.1	0.0546
MA0107.1	MA0107.1	0.0231
MA0108.2	MA0108.2	0.023
MA0111.1	MA0111.1	0.532
MA0112.2	MA0112.2	1.28981e-4
MA0113.1	MA0113.1	0.081
MA0114.1	MA0114.1	0.0124
MA0115.1	MA0115.1	0.16
MA0116.1	MA0116.1	0.0242
MA0117.1	MA0117.1	0.775
MA0119.1	MA0119.1	0.103
MA0122.1	MA0122.1	0.399
MA0124.1	MA0124.1	0.542
MA0125.1	MA0125.1	0.0201
MA0131.1	MA0131.1	0.707
MA0135.1	MA0135.1	0.00146
MA0136.1	MA0136.1	9.67278e-7
MA0137.2	MA0137.2	0.424
MA0138.2	MA0138.2	0.252
MA0139.1	MA0139.1	0.353
MA0140.1	MA0140.1	0.00454
MA0141.1	MA0141.1	0.00634
MA0142.1	MA0142.1	0.0193
MA0143.1	MA0143.1	0.0376
MA0144.1	MA0144.1	0.209
MA0145.1	MA0145.1	0.162
MA0146.1	MA0146.1	0.00759
MA0147.1	MA0147.1	0.631
MA0148.1	MA0148.1	0.0167
MA0149.1	MA0149.1	0.00384
MA0150.1	MA0150.1	2.50571e-4
MA0152.1	MA0152.1	0.336
MA0153.1	MA0153.1	0.537
MA0154.1	MA0154.1	0.045
MA0155.1	MA0155.1	0.663
MA0156.1	MA0156.1	4.10774e-4
MA0157.1	MA0157.1	0.0277
MA0159.1	MA0159.1	0.00206
MA0160.1	MA0160.1	0.0212
MA0162.1	MA0162.1	0.271
MA0163.1	MA0163.1	4.3358e-5
MA0164.1	MA0164.1	0.568
MA0258.1	MA0258.1	0.00754
MA0259.1	MA0259.1	0.987

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12726

Novel motif	Logo	P-value
1	1	0.0642
10	10	0.0722
100	100	0.58
101	101	0.638
102	102	0.973
103	103	0.249
104	104	0.206
105	105	0.297
106	106	0.014
107	107	0.0806
108	108	0.784
109	109	0.0033
11	11	0.0314
110	110	0.214
111	111	0.0859
112	112	0.0938
113	113	0.938
114	114	0.00996
115	115	0.814
116	116	0.368
117	117	0.0297
118	118	0.191
119	119	0.105
12	12	0.802
120	120	0.816
121	121	0.432
122	122	0.947
123	123	0.767
124	124	0.195
125	125	0.809
126	126	0.00845
127	127	0.267
128	128	0.156
129	129	0.434
13	13	0.00813
130	130	0.831
131	131	0.9
132	132	0.956
133	133	0.221
134	134	0.493
135	135	0.615
136	136	0.0117
137	137	0.557
138	138	0.51
139	139	0.0361
14	14	0.803
140	140	0.257
141	141	0.487
142	142	0.978
143	143	0.0155
144	144	0.43
145	145	0.512
146	146	0.814
147	147	0.732
148	148	0.0221
149	149	0.125
15	15	0.0914
150	150	0.254
151	151	0.363
152	152	0.0288
153	153	0.87
154	154	0.837
155	155	0.255
156	156	0.649
157	157	0.662
158	158	0.566
159	159	0.824
16	16	0.0589
160	160	0.131
161	161	0.0976
162	162	0.749
163	163	0.22
164	164	0.0093
165	165	0.813
166	166	0.674
167	167	0.258
168	168	0.298
169	169	0.00589
17	17	0.0616
18	18	0.344
19	19	0.131
2	2	0.558
20	20	0.5
21	21	0.11
22	22	0.123
23	23	0.0965
24	24	0.18
25	25	0.578
26	26	0.0144
27	27	0.576
28	28	0.782
29	29	0.0482
3	3	0.0378
30	30	0.967
31	31	0.884
32	32	0.0274
33	33	0.348
34	34	0.69
35	35	0.631
36	36	0.257
37	37	0.0236
38	38	0.225
39	39	0.203
4	4	0.606
40	40	0.112
41	41	0.566
42	42	0.207
43	43	0.127
44	44	0.0948
45	45	0.667
46	46	0.172
47	47	0.138
48	48	0.0937
49	49	0.14
5	5	0.233
50	50	0.325
51	51	0.423
52	52	0.371
53	53	0.614
54	54	0.273
55	55	0.187
56	56	0.321
57	57	0.255
58	58	0.164
59	59	0.0352
6	6	0.829
60	60	0.0522
61	61	0.0255
62	62	0.121
63	63	0.117
64	64	0.45
65	65	0.17
66	66	0.942
67	67	0.77
68	68	0.459
69	69	0.367
7	7	0.13
70	70	0.0535
71	71	0.015
72	72	0.396
73	73	0.0156
74	74	0.715
75	75	0.0346
76	76	0.367
77	77	0.11
78	78	0.00482
79	79	0.162
8	8	0.0963
80	80	0.722
81	81	0.549
82	82	0.175
83	83	0.458
84	84	0.94
85	85	0.042
86	86	0.24
87	87	0.0514
88	88	0.546
89	89	0.358
9	9	0.379
90	90	0.426
91	91	0.366
92	92	0.129
93	93	0.645
94	94	0.132
95	95	0.0168
96	96	0.816
97	97	0.816
98	98	0.174
99	99	0.669

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12726

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000348 human neuron samples

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000348 (human neuron samples)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000073,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000924,UBERON:0005743,UBERON:0006601
+|DRA_sample_Accession=CAGE@SAMD00005710
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000540,CL:0000055,CL:0000047,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002371,CL:0002319,CL:0000221,CL:0000393,CL:0000220,CL:0000004,CL:0000031,CL:0000211,CL:0000404,CL:0000255,CL:0000133
+|accession_numbers=CAGE;DRX008376;DRR009248;DRZ000673;DRZ002058;DRZ012023;DRZ013408
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000348
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:37764128..37764258,-!p1@NEUROD2!2.66!451.62!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.47!294.33!NEUROD6;;chr1:244214577..244214593,+!p1@ZNF238!2.47!291.31!ZNF238;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.44!275.73!POU3F3;;chr14:29235961..29236008,+!p1@FOXG1!2.41!258.98!FOXG1;;chr1:151032922..151032951,+!p2@MLLT11!2.25!285.95!MLLT11;;chr14:29236269..29236285,+!p3@FOXG1!2.13!132.67!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!2.11!127.98!SOX11;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!2.08!118.10!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!2.03!105.70!SOX2;;chrX:25034067..25034088,-!p1@ARX!1.93!84.93!ARX;;chr4:81118647..81118666,+!p1@PRDM8!1.90!101.51!PRDM8;;chr2:200322229..200322251,-!p3@SATB2!1.89!76.72!SATB2;;chr4:57547454..57547469,-!p1@HOPX!1.87!72.87!HOPX;;chr14:29234581..29234601,+!p2@FOXG1!1.86!71.70!FOXG1;;chr2:5832493..5832507,+!p2@SOX11!1.86!71.36!SOX11;;chr1:151032860..151032918,+!p1@MLLT11!1.85!772.42!MLLT11;;chr2:162272785..162272836,+!p1@TBR1!1.85!70.19!TBR1;;chr20:20348740..20348757,+!p1@INSM1!1.84!67.84!INSM1;;chr19:13134772..13134822,+!p2@NFIX!1.79!88.28!NFIX;;chr8:65492756..65492768,+!p2@BHLHE22!1.78!58.97!BHLHE22;;chr7:96654133..96654150,-!p1@DLX5!1.74!54.11!DLX5;;chr2:16080659..16080685,+!p1@MYCN!1.69!47.91!MYCN;;chr2:60780607..60780624,-!p2@BCL11A!1.68!140.21!BCL11A;;chr9:126774018..126774055,+!p1@LHX2!1.66!44.73!LHX2;;chr1:151032957..151032968,+!p7@MLLT11!1.64!42.72!MLLT11;;chr19:38720294..38720348,-!p1@DPF1!1.63!51.93!DPF1;;chr7:100065686..100065701,-!p2@TSC22D4!1.63!42.05!TSC22D4;;chr3:181429741..181429767,+!p2@SOX2!1.63!41.88!SOX2;;chr2:2334997..2335053,-!p1@MYT1L!1.63!41.38!MYT1L;;chr2:172967621..172967637,-!p1@DLX2!1.62!105.70!DLX2;;chr2:162272889..162272915,+!p2@TBR1!1.58!37.19!TBR1;;chr19:47523058..47523114,+!p1@NPAS1!1.57!36.52!NPAS1;;chr1:244214611..244214624,+!p4@ZNF238!1.55!34.84!ZNF238;;chrX:82763292..82763317,+!p1@POU3F4!1.52!31.83!POU3F4;;chr2:172950227..172950249,+!p2@DLX1!1.49!29.82!DLX1;;chr2:239148671..239148686,-!p1@HES6!1.47!101.51!HES6;;chr12:103351444..103351461,+!p1@ASCL1!1.47!28.48!ASCL1;;chr2:200322723..200322739,-!p6@SATB2!1.47!28.31!SATB2;;chr6:21594206..21594221,+!p15@SOX4!1.43!26.13!SOX4;;chr4:113437332..113437337,-!p1@NEUROG2!1.42!25.29!NEUROG2;;chr6:19837592..19837621,+!p1@ID4!1.41!145.24!ID4;;chr19:13135582..13135600,+!p3@NFIX!1.41!24.79!NFIX;;chr9:126773880..126773895,+!p2@LHX2!1.41!24.62!LHX2;;chr14:29237009..29237049,+!p4@FOXG1!1.41!24.46!FOXG1;;chr15:57511609..57511651,+!p2@TCF12!1.40!40.20!TCF12;;chr5:88178983..88179012,-!p1@MEF2C!1.39!175.05!MEF2C;;chr2:172949484..172949522,+!p1@DLX1!1.39!23.28!DLX1;;chr2:2335109..2335134,-!p2@MYT1L!1.38!23.12!MYT1L;;chr14:29236301..29236317,+!p5@FOXG1!1.38!22.95!FOXG1;;chrX:84498989..84499003,+!p1@ZNF711!1.36!29.99!ZNF711;;chr2:166326200..166326216,+!p1@CSRNP3!1.35!31.16!CSRNP3;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.34!20.77!POU3F3;;chr1:23696348..23696363,-!p4@ZNF436!1.32!22.28!ZNF436;;chr12:24102576..24102623,-!p2@SOX5!1.32!20.10!SOX5;;chr14:33403881..33403924,+!p1@NPAS3!1.31!19.60!NPAS3;;chr2:175199675..175199688,+!p1@SP9!1.31!19.43!SP9;;chr18:53069419..53069450,-!p34@TCF4!1.30!18.93!TCF4;;chr12:111471526..111471541,+!p1@CUX2!1.30!18.76!CUX2;;chr9:14308004..14308041,-!p14@NFIB!1.30!18.76!NFIB;;chr6:21593973..21593988,+!p1@SOX4!1.29!642.59!SOX4;;chr5:92918768..92918783,+!p8@NR2F1!1.28!17.92!NR2F1;;chr11:63684602..63684664,-!p1@RCOR2!1.27!34.68!RCOR2;;chr18:52989001..52989030,-!p10@TCF4!1.27!19.26!TCF4;;chr20:657284..657307,-!p1@SCRT2!1.27!17.59!SCRT2;;chr6:99282438..99282457,+!p2@POU3F2!1.27!17.59!POU3F2;;chr10:118897911..118897974,-!p1@VAX1!1.26!17.25!VAX1;;chr6:99282475..99282501,+!p1@POU3F2!1.23!16.08!POU3F2;;chr9:20621927..20621996,-!p3@MLLT3!1.22!26.13!MLLT3;;chr5:92919100..92919135,+!p3@NR2F1!1.22!18.76!NR2F1;;chr2:200320768..200320800,-!p4@SATB2!1.22!15.41!SATB2;;chr2:200322259..200322280,-!p5@SATB2!1.22!15.41!SATB2;;chr18:52989031..52989079,-!p2@TCF4!1.21!35.35!TCF4;;chr6:21594252..21594285,+!p11@SOX4!1.21!16.92!SOX4;;chr2:162272716..162272753,+!p3@TBR1!1.21!15.24!TBR1;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.21!15.08!POU3F3;;chr4:57547820..57547829,-!p8@HOPX!1.21!15.08!HOPX;;chr16:51185172..51185197,-!p1@SALL1!1.20!14.91!SALL1;;chr14:73360799..73360817,-!p1@DPF3!1.19!49.75!DPF3;;chr2:182545234..182545252,-!p1@NEUROD1!1.19!14.41!NEUROD1;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.07!PAX6;;chr2:145277882..145277967,-!p3@ZEB2!1.17!23.79!ZEB2;;chr2:166428839..166428859,+!p2@CSRNP3!1.17!13.90!CSRNP3;;chr18:52988979..52988993,-!p18@TCF4!1.17!13.90!TCF4;;chr1:244214655..244214666,+!p7@ZNF238!1.17!13.90!ZNF238;;chr14:58798013..58798071,+!p2@ARID4A!1.17!13.74!ARID4A;;chr15:37392724..37392757,-!p1@MEIS2!1.16!61.65!MEIS2;;chr6:99282592..99282616,+!p3@POU3F2!1.16!13.57!POU3F2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.16!13.40!RUNX1T1;;chr4:57547751..57547764,-!p6@HOPX!1.16!13.40!HOPX;;chr9:124991204..124991246,-!p1@LHX6!1.16!13.40!LHX6;;chr17:7492684..7492778,-!p2@SOX15!1.15!27.81!SOX15;;chrX:84499081..84499115,+!p2@ZNF711!1.15!19.10!ZNF711;;chr2:145275982..145276003,-!p7@ZEB2!1.15!13.07!ZEB2;;chr2:60781201..60781258,-!p3@BCL11A!1.15!13.07!BCL11A;;chr4:57522598..57522664,-!p3@HOPX!1.15!13.07!HOPX;;chr1:41827095..41827155,+!p1@FOXO6!1.13!16.92!FOXO6;;chr18:53068911..53068935,-!p4@TCF4!1.13!14.24!TCF4;;chr9:126774058..126774081,+!p3@LHX2!1.13!12.40!LHX2;;chr5:124082322..124082364,-!p1@ZNF608!1.12!31.49!ZNF608;;chr15:80696703..80696754,+!p1@ARNT2!1.11!15.91!ARNT2;;chr8:65492915..65492932,+!p1@BHLHE22!1.11!11.89!BHLHE22;;chr2:200322654..200322707,-!p2@SATB2!1.10!17.09!SATB2;;chr15:37392094..37392116,-!p6@MEIS2!1.10!14.41!MEIS2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.10!11.56!PEG3;;chr5:124081979..124082021,-!p7@ZNF608!1.10!11.56!ZNF608;;chr18:56532100..56532130,+!p1@ZNF532!1.09!21.11!ZNF532;;chr18:52988952..52988965,-!p23@TCF4!1.09!11.39!TCF4;;chr18:53089453..53089482,-!p11@TCF4!1.09!11.39!TCF4;;chr6:21597765..21597779,+!p2@SOX4!1.08!88.78!SOX4;;chr1:244219392..244219409,+!p5@ZNF238!1.08!10.89!ZNF238;;chr5:92918919..92918942,+!p1@NR2F1!1.06!47.24!NR2F1;;chr2:25475120..25475176,-!p2@DNMT3A!1.06!14.07!DNMT3A;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.74!HEY1;;chr7:20826504..20826526,-!p1@SP8!1.04!9.88!SP8;;chr14:29236169..29236216,+!p6@FOXG1!1.04!9.88!FOXG1;;chr2:200325204..200325243,-!p7@SATB2!1.04!9.88!SATB2;;chr2:63277948..63277974,+!p1@OTX1!1.04!9.88!OTX1;;chr5:178368186..178368238,+!p1@ZNF454!1.03!17.42!ZNF454;;chr7:150945663..150945692,-!p5@SMARCD3!1.03!9.72!SMARCD3;;chr3:114173720..114173794,-!p6@ZBTB20!1.03!9.72!ZBTB20;;chr9:14314131..14314147,-!p2@NFIB!1.02!54.28!NFIB;;chr19:13134457..13134462,+!p5@NFIX!1.02!17.09!NFIX;;chr5:124082279..124082319,-!p3@ZNF608!1.02!11.56!ZNF608;;chr21:34398234..34398250,+!p1@OLIG2!1.02!9.38!OLIG2;;chr7:150974206..150974255,-!p1@SMARCD3!1.01!58.13!SMARCD3;;chr19:19976683..19976709,+!p1@ZNF253!1.01!41.71!ZNF253;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.22!ZBTB38;;chr5:150284420..150284443,-!p2@ZNF300!0.99!17.59!ZNF300;;chr1:244219038..244219054,+!p3@ZNF238!0.99!11.89!ZNF238;;chr2:60780580..60780590,-!p9@BCL11A!0.99!8.88!BCL11A;;chr8:93107696..93107716,-!p8@RUNX1T1!0.99!8.88!RUNX1T1;;chr2:200322711..200322722,-!p10@SATB2!0.99!8.71!SATB2;;chr17:70117153..70117174,+!p1@SOX9!0.98!91.13!SOX9;;chr18:53069389..53069416,-!p40@TCF4!0.98!8.54!TCF4;;chr19:13135731..13135787,+!p10@NFIX!0.97!8.38!NFIX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.97!8.38!ZSCAN1;;chr2:60780753..60780800,-!p1@BCL11A!0.96!41.38!BCL11A;;chrX:82763265..82763283,+!p2@POU3F4!0.96!8.21!POU3F4;;chr8:40755333..40755352,-!p1@ZMAT4!0.96!8.21!ZMAT4;;chr13:95364784..95364806,-!p1@SOX21!0.96!8.21!SOX21;;chr16:71918033..71918101,-!p1@ZNF821!0.95!30.32!ZNF821;;chr1:38512457..38512474,-!p1@POU3F1!0.95!8.71!POU3F1;;chr11:31832658..31832681,-!p1@PAX6!0.95!7.87!PAX6;;chr9:14082760..14082775,-!p6@NFIB!0.94!12.90!NFIB;;chr9:20622444..20622468,-!p2@MLLT3!0.93!25.13!MLLT3;;chr18:53257027..53257052,-!p3@TCF4!0.92!30.66!TCF4;;chr5:92919068..92919082,+!p5@NR2F1!0.92!8.88!NR2F1;;chr2:73144617..73144654,+!p1@EMX1!0.92!7.37!EMX1;;chr4:57522513..57522548,-!p4@HOPX!0.91!7.04!HOPX;;chr6:108487289..108487302,+!p1@NR2E1!0.91!7.04!NR2E1;;chr21:34442439..34442455,+!p1@OLIG1!0.91!7.04!OLIG1;;chr9:20621834..20621884,-!p5@MLLT3!0.91!7.04!MLLT3;;chr2:145277640..145277771,-!p1@ZEB2!0.90!98.50!ZEB2;;chr9:14314566..14314618,-!p1@NFIB!0.90!86.77!NFIB;;chr9:14083467..14083483,-!p4@NFIB!0.90!17.59!NFIB;;chr19:47922750..47922795,-!p1@MEIS3!0.90!11.73!MEIS3;;chr2:60780516..60780526,-!p11@BCL11A!0.90!6.87!BCL11A;;chr6:99282570..99282591,+!p4@POU3F2!0.90!6.87!POU3F2;;chr11:31839488..31839515,-!p3@PAX6!0.90!6.87!PAX6;;chr19:58220517..58220583,-!p1@ZNF154!0.89!22.45!ZNF154;;chr6:28411241..28411284,-!p1@ZSCAN23!0.89!22.45!ZSCAN23;;chr7:31380502..31380515,-!p3@NEUROD6!0.89!6.70!NEUROD6;;chr11:66188503..66188511,+!p1@NPAS4!0.89!6.70!NPAS4;;chrX:84499056..84499078,+!p3@ZNF711!0.89!6.70!ZNF711;;chrX:139587228..139587234,-!p1@SOX3!0.89!6.70!SOX3;;chr16:30406423..30406447,+!p4@ZNF48!0.89!6.70!ZNF48;;chr10:119302232..119302265,+!p1@EMX2!0.88!6.53!EMX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.88!6.53!PKNOX2;;chr2:2335070..2335098,-!p4@MYT1L!0.88!6.53!MYT1L;;chr1:2985760..2985774,+!p1@PRDM16!0.88!6.53!PRDM16;;chr1:23696308..23696339,-!p2@ZNF436!0.87!14.07!ZNF436;;chr9:14313893..14313908,-!p7@NFIB!0.87!9.38!NFIB;;chr9:109625401..109625458,+!p1@ZNF462!0.86!17.09!ZNF462;;chr18:53257001..53257015,-!p5@TCF4!0.86!11.22!TCF4;;chr7:31380440..31380451,-!p4@NEUROD6!0.86!6.20!NEUROD6;;chr2:145275947..145275981,-!p10@ZEB2!0.86!6.20!ZEB2;;chr2:166428861..166428883,+!p3@CSRNP3!0.86!6.20!CSRNP3;;chr2:60780546..60780555,-!p10@BCL11A!0.86!6.20!BCL11A;;chr16:79634624..79634642,-!p1@MAF!0.85!25.29!MAF;;chr13:72441315..72441454,-!p1@DACH1!0.85!12.56!DACH1;;chr1:158969752..158969780,+!p6@IFI16!0.85!11.06!IFI16;;chr3:33482052..33482116,-!p2@UBP1!0.85!9.72!UBP1;;chr2:16080635..1608065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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
+|ffid_belonging_in_development=CL:0000133,CL:0000031,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11574-120E8
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000348
+|is_a=EFO:0002091;;FF:0000348
+|is_obsolete=
+|library_id=CNhs12726
+|library_id_phase_based=2:CNhs12726
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11574
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11574
 |name=Neurons, donor2
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12726,LSID960,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=120
 |rna_catalog_number=SC1525
@@ Line 54: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=120E8
+|rna_tube_id=1.20E+10
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.2743093922838e-233!GO:0043226;organelle;8.17267942242293e-193!GO:0043229;intracellular organelle;3.36763110612415e-192!GO:0043227;membrane-bound organelle;1.06602419105248e-191!GO:0043231;intracellular membrane-bound organelle;1.40896129304422e-191!GO:0005737;cytoplasm;5.80529448896917e-153!GO:0044422;organelle part;1.61948518101287e-127!GO:0044446;intracellular organelle part;6.54034541503034e-126!GO:0044444;cytoplasmic part;3.37761388084504e-106!GO:0032991;macromolecular complex;4.54549070493383e-99!GO:0005634;nucleus;1.53062853608246e-87!GO:0030529;ribonucleoprotein complex;3.76620371286666e-82!GO:0005515;protein binding;4.13760504351092e-79!GO:0043170;macromolecule metabolic process;2.53987494500506e-72!GO:0044238;primary metabolic process;1.05456780113273e-71!GO:0044237;cellular metabolic process;9.50060853469209e-71!GO:0003723;RNA binding;1.69210713107043e-67!GO:0044428;nuclear part;2.43081262109489e-67!GO:0016043;cellular component organization and biogenesis;2.77053254991716e-66!GO:0043233;organelle lumen;4.40839856280959e-58!GO:0031974;membrane-enclosed lumen;4.40839856280959e-58!GO:0043283;biopolymer metabolic process;4.30543849540259e-52!GO:0043234;protein complex;4.6148510951086e-50!GO:0005739;mitochondrion;4.79100499293417e-49!GO:0010467;gene expression;1.66331371513294e-48!GO:0006396;RNA processing;1.61531458039576e-47!GO:0005840;ribosome;5.3512020801459e-47!GO:0033036;macromolecule localization;1.14259089003672e-43!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.4252176906531e-43!GO:0031090;organelle membrane;2.84908330603976e-43!GO:0015031;protein transport;2.72889891726577e-42!GO:0016071;mRNA metabolic process;6.66804816616769e-41!GO:0003735;structural constituent of ribosome;2.18814977546265e-40!GO:0006996;organelle organization and biogenesis;5.07423154358976e-40!GO:0008380;RNA splicing;1.26042343789645e-39!GO:0008104;protein localization;1.54030764428963e-39!GO:0045184;establishment of protein localization;3.16241954671259e-39!GO:0031981;nuclear lumen;7.51976772427134e-39!GO:0006412;translation;1.89044938869764e-38!GO:0006397;mRNA processing;2.92624586102616e-37!GO:0044429;mitochondrial part;2.29498981946804e-35!GO:0046907;intracellular transport;1.03047282048165e-34!GO:0031967;organelle envelope;2.91254031501256e-34!GO:0031975;envelope;3.26188137082213e-34!GO:0033279;ribosomal subunit;5.65917933181703e-34!GO:0019538;protein metabolic process;1.07928698648325e-32!GO:0043228;non-membrane-bound organelle;2.59060001978058e-31!GO:0043232;intracellular non-membrane-bound organelle;2.59060001978058e-31!GO:0065003;macromolecular complex assembly;3.12627603413187e-30!GO:0003676;nucleic acid binding;3.68150654140019e-30!GO:0044267;cellular protein metabolic process;1.45934592234946e-29!GO:0044260;cellular macromolecule metabolic process;2.20608025343954e-29!GO:0005829;cytosol;3.33813118166509e-29!GO:0051649;establishment of cellular localization;5.02552468996e-29!GO:0051641;cellular localization;4.10387767893663e-28!GO:0006259;DNA metabolic process;9.17448176439143e-28!GO:0009059;macromolecule biosynthetic process;1.32858191329775e-27!GO:0022607;cellular component assembly;3.79947083588494e-27!GO:0005681;spliceosome;8.5103627922309e-27!GO:0006886;intracellular protein transport;2.1543978811875e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.49539506223677e-25!GO:0016070;RNA metabolic process;6.67517354450589e-25!GO:0009058;biosynthetic process;1.97643016391644e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.08002574514493e-24!GO:0005740;mitochondrial envelope;4.87125396208002e-24!GO:0044249;cellular biosynthetic process;7.72001642042352e-24!GO:0006119;oxidative phosphorylation;2.24871621662075e-23!GO:0019866;organelle inner membrane;3.39230726809736e-23!GO:0005654;nucleoplasm;3.56855543229337e-23!GO:0031966;mitochondrial membrane;4.4392386971513e-23!GO:0005743;mitochondrial inner membrane;4.46961973472732e-21!GO:0044445;cytosolic part;3.4679300391583e-20!GO:0016462;pyrophosphatase activity;1.44373743778273e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.53537480539204e-19!GO:0044455;mitochondrial membrane part;1.76530499677536e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.16919215926705e-19!GO:0017111;nucleoside-triphosphatase activity;3.06647908677475e-19!GO:0044451;nucleoplasm part;3.31335828012446e-19!GO:0000166;nucleotide binding;8.49550439036548e-19!GO:0015934;large ribosomal subunit;1.03959318566908e-17!GO:0005794;Golgi apparatus;2.07022984611363e-17!GO:0006512;ubiquitin cycle;2.80794080967694e-17!GO:0015935;small ribosomal subunit;3.85114207144807e-17!GO:0005746;mitochondrial respiratory chain;6.3114182094691e-17!GO:0016192;vesicle-mediated transport;7.39578507526137e-17!GO:0051276;chromosome organization and biogenesis;9.21190333418101e-17!GO:0007049;cell cycle;1.08078509568974e-16!GO:0012505;endomembrane system;1.11110762117457e-16!GO:0022618;protein-RNA complex assembly;1.78014408838431e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.6450662107061e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;4.28476881995191e-16!GO:0006457;protein folding;4.65996528694985e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.44708815770489e-16!GO:0003954;NADH dehydrogenase activity;6.44708815770489e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.44708815770489e-16!GO:0016874;ligase activity;9.97988456533398e-16!GO:0005694;chromosome;2.09796668142331e-15!GO:0006323;DNA packaging;2.80741921458212e-15!GO:0005730;nucleolus;6.14613955627253e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.63470047409392e-14!GO:0048770;pigment granule;2.18025500293117e-14!GO:0042470;melanosome;2.18025500293117e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.87576901496343e-14!GO:0000375;RNA splicing, via transesterification reactions;4.87576901496343e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.87576901496343e-14!GO:0044427;chromosomal part;5.14270319401156e-14!GO:0031980;mitochondrial lumen;5.92464306945634e-14!GO:0005759;mitochondrial matrix;5.92464306945634e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.64957409630688e-14!GO:0045271;respiratory chain complex I;6.64957409630688e-14!GO:0005747;mitochondrial respiratory chain complex I;6.64957409630688e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.49431914116286e-14!GO:0042773;ATP synthesis coupled electron transport;7.49431914116286e-14!GO:0008135;translation factor activity, nucleic acid binding;7.92416139392399e-14!GO:0005761;mitochondrial ribosome;1.64775772384545e-13!GO:0000313;organellar ribosome;1.64775772384545e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.1166589125512e-13!GO:0032553;ribonucleotide binding;2.95397458736909e-13!GO:0032555;purine ribonucleotide binding;2.95397458736909e-13!GO:0008134;transcription factor binding;4.03708125731093e-13!GO:0006974;response to DNA damage stimulus;7.96211578068364e-13!GO:0006605;protein targeting;1.08041117526349e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.32630122081396e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.35321977406378e-12!GO:0019941;modification-dependent protein catabolic process;1.72705244607345e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.72705244607345e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.8355454415853e-12!GO:0048193;Golgi vesicle transport;1.8355454415853e-12!GO:0043412;biopolymer modification;2.33213905784488e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.94832644406486e-12!GO:0044265;cellular macromolecule catabolic process;2.95168070731646e-12!GO:0044257;cellular protein catabolic process;3.5682006678049e-12!GO:0006333;chromatin assembly or disassembly;3.86476021917855e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.99744250539368e-12!GO:0022402;cell cycle process;7.48339204499572e-12!GO:0051082;unfolded protein binding;7.61990808289556e-12!GO:0015630;microtubule cytoskeleton;8.74239281500774e-12!GO:0017076;purine nucleotide binding;1.12048185025035e-11!GO:0065004;protein-DNA complex assembly;2.00564574257037e-11!GO:0000278;mitotic cell cycle;2.84683694402858e-11!GO:0031965;nuclear membrane;3.20887773241984e-11!GO:0043285;biopolymer catabolic process;3.61612698256528e-11!GO:0006464;protein modification process;4.69185196390489e-11!GO:0005635;nuclear envelope;5.3828584946023e-11!GO:0006281;DNA repair;7.09443007021953e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.22420094255352e-10!GO:0008565;protein transporter activity;1.4335062461319e-10!GO:0030163;protein catabolic process;1.4853575989998e-10!GO:0031988;membrane-bound vesicle;2.07304227832946e-10!GO:0044453;nuclear membrane part;2.15666773553938e-10!GO:0000785;chromatin;2.68166732134568e-10!GO:0050794;regulation of cellular process;3.76713526621884e-10!GO:0009057;macromolecule catabolic process;3.8438097623447e-10!GO:0043687;post-translational protein modification;4.02947500695674e-10!GO:0006913;nucleocytoplasmic transport;5.36597107540374e-10!GO:0016023;cytoplasmic membrane-bound vesicle;5.84083128289931e-10!GO:0003743;translation initiation factor activity;6.6381557136314e-10!GO:0016604;nuclear body;6.68014393967831e-10!GO:0042254;ribosome biogenesis and assembly;7.33970068685869e-10!GO:0051186;cofactor metabolic process;1.03392491491115e-09!GO:0006413;translational initiation;1.07253161402941e-09!GO:0031982;vesicle;1.42366852255212e-09!GO:0051169;nuclear transport;1.42705249174213e-09!GO:0003924;GTPase activity;1.53279689991745e-09!GO:0006446;regulation of translational initiation;1.66591809312869e-09!GO:0006334;nucleosome assembly;2.17761703805089e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.4338830500718e-09!GO:0005643;nuclear pore;3.00751276362889e-09!GO:0016607;nuclear speck;3.47763256701972e-09!GO:0050789;regulation of biological process;3.51226060612875e-09!GO:0006260;DNA replication;3.58284362597317e-09!GO:0031410;cytoplasmic vesicle;4.0208456897543e-09!GO:0031497;chromatin assembly;4.49731498411764e-09!GO:0005524;ATP binding;4.80619661223783e-09!GO:0006163;purine nucleotide metabolic process;5.00221385262108e-09!GO:0009259;ribonucleotide metabolic process;5.08415540517656e-09!GO:0008639;small protein conjugating enzyme activity;5.5161504452932e-09!GO:0032559;adenyl ribonucleotide binding;6.63443712743878e-09!GO:0019829;cation-transporting ATPase activity;7.11398471177338e-09!GO:0000087;M phase of mitotic cell cycle;7.11398471177338e-09!GO:0042623;ATPase activity, coupled;7.46913784155669e-09!GO:0009150;purine ribonucleotide metabolic process;7.98328485057463e-09!GO:0015986;ATP synthesis coupled proton transport;8.84544139713472e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.84544139713472e-09!GO:0016887;ATPase activity;9.35697312922449e-09!GO:0004842;ubiquitin-protein ligase activity;1.02692095153515e-08!GO:0006403;RNA localization;1.03284401906957e-08!GO:0007067;mitosis;1.06422931483373e-08!GO:0019787;small conjugating protein ligase activity;1.54757793378902e-08!GO:0050657;nucleic acid transport;1.67210217188806e-08!GO:0051236;establishment of RNA localization;1.67210217188806e-08!GO:0050658;RNA transport;1.67210217188806e-08!GO:0005783;endoplasmic reticulum;1.73760901295579e-08!GO:0044431;Golgi apparatus part;1.94996566328921e-08!GO:0044248;cellular catabolic process;2.07992074289428e-08!GO:0009141;nucleoside triphosphate metabolic process;2.12361178942249e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.22503850154418e-08!GO:0051301;cell division;2.23932425170113e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.2835079672145e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.2835079672145e-08!GO:0006164;purine nucleotide biosynthetic process;3.88728865880116e-08!GO:0015631;tubulin binding;4.47508834592294e-08!GO:0003712;transcription cofactor activity;5.05637916368868e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.23273742516422e-08!GO:0022403;cell cycle phase;5.57404908484579e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.21118532012196e-08!GO:0004386;helicase activity;6.45188515601383e-08!GO:0019222;regulation of metabolic process;7.38009868485676e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.44528251214025e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.44528251214025e-08!GO:0009260;ribonucleotide biosynthetic process;7.94867981068679e-08!GO:0006732;coenzyme metabolic process;8.68430597877518e-08!GO:0009060;aerobic respiration;8.81443501757577e-08!GO:0009719;response to endogenous stimulus;9.19322122547578e-08!GO:0016568;chromatin modification;1.00971322603602e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.09001654362325e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.09001654362325e-07!GO:0045045;secretory pathway;1.10008598066343e-07!GO:0046034;ATP metabolic process;1.15810023794163e-07!GO:0030554;adenyl nucleotide binding;1.81197804258265e-07!GO:0016881;acid-amino acid ligase activity;2.06732668387121e-07!GO:0005768;endosome;2.06732668387121e-07!GO:0007010;cytoskeleton organization and biogenesis;2.10364639960725e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.28680055600833e-07!GO:0045333;cellular respiration;2.95975700338953e-07!GO:0009055;electron carrier activity;3.07655462278034e-07!GO:0006754;ATP biosynthetic process;3.1277221729668e-07!GO:0006753;nucleoside phosphate metabolic process;3.1277221729668e-07!GO:0044432;endoplasmic reticulum part;3.89158834312589e-07!GO:0017038;protein import;4.10355300193185e-07!GO:0005525;GTP binding;4.30644116424542e-07!GO:0008026;ATP-dependent helicase activity;5.10547514560424e-07!GO:0065002;intracellular protein transport across a membrane;5.57796247087027e-07!GO:0032446;protein modification by small protein conjugation;5.59526482157231e-07!GO:0006461;protein complex assembly;5.91868285884702e-07!GO:0006364;rRNA processing;5.92132815127909e-07!GO:0031252;leading edge;6.15270727125745e-07!GO:0051726;regulation of cell cycle;6.53920259103542e-07!GO:0000074;regulation of progression through cell cycle;7.18339146052343e-07!GO:0006793;phosphorus metabolic process;7.35976489553918e-07!GO:0006796;phosphate metabolic process;7.35976489553918e-07!GO:0048523;negative regulation of cellular process;7.50988120148818e-07!GO:0006366;transcription from RNA polymerase II promoter;8.44986096719773e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.56391584642852e-07!GO:0046930;pore complex;9.36502375006754e-07!GO:0000245;spliceosome assembly;9.36502375006754e-07!GO:0051028;mRNA transport;9.5473231967286e-07!GO:0016072;rRNA metabolic process;1.01408024789722e-06!GO:0048475;coated membrane;1.10197463254589e-06!GO:0030117;membrane coat;1.10197463254589e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.35364692616e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.48561354196838e-06!GO:0005874;microtubule;1.49048299112586e-06!GO:0005793;ER-Golgi intermediate compartment;1.49320856612871e-06!GO:0016567;protein ubiquitination;1.76849035916032e-06!GO:0003697;single-stranded DNA binding;2.1905065461375e-06!GO:0045259;proton-transporting ATP synthase complex;2.53070737730242e-06!GO:0000139;Golgi membrane;2.59517597339474e-06!GO:0043566;structure-specific DNA binding;3.04042079889135e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.19726406373162e-06!GO:0000279;M phase;3.23674981882643e-06!GO:0006099;tricarboxylic acid cycle;3.76184572544856e-06!GO:0046356;acetyl-CoA catabolic process;3.76184572544856e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.93993850345965e-06!GO:0032561;guanyl ribonucleotide binding;6.13451974267935e-06!GO:0019001;guanyl nucleotide binding;6.13451974267935e-06!GO:0006399;tRNA metabolic process;7.18393409624039e-06!GO:0006350;transcription;8.0352572436822e-06!GO:0016310;phosphorylation;8.59045856683367e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.83157588153038e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.34604975773024e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.36710733293887e-06!GO:0004812;aminoacyl-tRNA ligase activity;9.36710733293887e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.36710733293887e-06!GO:0016363;nuclear matrix;9.61253828630884e-06!GO:0044440;endosomal part;1.03145120959536e-05!GO:0010008;endosome membrane;1.03145120959536e-05!GO:0006084;acetyl-CoA metabolic process;1.38193590252945e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.40673745804478e-05!GO:0003729;mRNA binding;1.51406948208838e-05!GO:0031323;regulation of cellular metabolic process;1.67816569407013e-05!GO:0008017;microtubule binding;1.78547595408068e-05!GO:0032940;secretion by cell;1.96782805520636e-05!GO:0030120;vesicle coat;1.96782805520636e-05!GO:0030662;coated vesicle membrane;1.96782805520636e-05!GO:0048519;negative regulation of biological process;2.0518316327668e-05!GO:0007017;microtubule-based process;2.14555908350021e-05!GO:0005789;endoplasmic reticulum membrane;2.17036332768241e-05!GO:0000902;cell morphogenesis;2.2232771879182e-05!GO:0032989;cellular structure morphogenesis;2.2232771879182e-05!GO:0043623;cellular protein complex assembly;2.26581782817627e-05!GO:0006613;cotranslational protein targeting to membrane;2.40704642649806e-05!GO:0043038;amino acid activation;2.6066022002741e-05!GO:0006418;tRNA aminoacylation for protein translation;2.6066022002741e-05!GO:0043039;tRNA aminoacylation;2.6066022002741e-05!GO:0003724;RNA helicase activity;2.65561313200258e-05!GO:0005905;coated pit;2.85185689150262e-05!GO:0051246;regulation of protein metabolic process;2.91577268380221e-05!GO:0009109;coenzyme catabolic process;3.17810246224182e-05!GO:0051187;cofactor catabolic process;3.23767632971709e-05!GO:0005762;mitochondrial large ribosomal subunit;3.59037843562744e-05!GO:0000315;organellar large ribosomal subunit;3.59037843562744e-05!GO:0007005;mitochondrion organization and biogenesis;4.23877065312433e-05!GO:0051188;cofactor biosynthetic process;4.79060020159123e-05!GO:0051427;hormone receptor binding;5.47165073447072e-05!GO:0006752;group transfer coenzyme metabolic process;5.78676840383868e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.95152423369676e-05!GO:0005770;late endosome;6.01659889880368e-05!GO:0009892;negative regulation of metabolic process;6.7341991402627e-05!GO:0005813;centrosome;7.26221542252959e-05!GO:0004298;threonine endopeptidase activity;7.26221542252959e-05!GO:0008092;cytoskeletal protein binding;7.66532332260649e-05!GO:0031324;negative regulation of cellular metabolic process;7.73570696826014e-05!GO:0007399;nervous system development;7.85923047556234e-05!GO:0016044;membrane organization and biogenesis;8.28948133285527e-05!GO:0051170;nuclear import;8.34908366033653e-05!GO:0016564;transcription repressor activity;8.83960737467676e-05!GO:0010468;regulation of gene expression;8.94976186423733e-05!GO:0012501;programmed cell death;9.51876918511094e-05!GO:0006606;protein import into nucleus;9.78991193041583e-05!GO:0051168;nuclear export;0.000106135824119193!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000107585921369303!GO:0035257;nuclear hormone receptor binding;0.000112885661410449!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000113019939064856!GO:0065007;biological regulation;0.000115915277649897!GO:0009056;catabolic process;0.000130120408043113!GO:0005798;Golgi-associated vesicle;0.000132833969709291!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000136335198640498!GO:0003713;transcription coactivator activity;0.000137831980638961!GO:0006915;apoptosis;0.000143397595956824!GO:0048471;perinuclear region of cytoplasm;0.000153122393405291!GO:0005773;vacuole;0.000153631191234429!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000159105123362975!GO:0005667;transcription factor complex;0.000161536994946915!GO:0005815;microtubule organizing center;0.000164941958515011!GO:0008654;phospholipid biosynthetic process;0.000189356082614621!GO:0043069;negative regulation of programmed cell death;0.000194633637847088!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000198886622633748!GO:0030027;lamellipodium;0.000209687751598072!GO:0000151;ubiquitin ligase complex;0.000214078072595159!GO:0032774;RNA biosynthetic process;0.000223639053139653!GO:0006916;anti-apoptosis;0.000232086870748838!GO:0050767;regulation of neurogenesis;0.00023938594154925!GO:0019899;enzyme binding;0.00023953933056702!GO:0003714;transcription corepressor activity;0.000241940699940898!GO:0007264;small GTPase mediated signal transduction;0.000260933721653799!GO:0006351;transcription, DNA-dependent;0.000260933721653799!GO:0043066;negative regulation of apoptosis;0.00026177662509383!GO:0006414;translational elongation;0.000264005836986035!GO:0003899;DNA-directed RNA polymerase activity;0.000267827088656769!GO:0016481;negative regulation of transcription;0.000277026025357073!GO:0000314;organellar small ribosomal subunit;0.000277026025357073!GO:0005763;mitochondrial small ribosomal subunit;0.000277026025357073!GO:0045786;negative regulation of progression through cell cycle;0.000285188252126759!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000293505832480424!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000301782243231658!GO:0043021;ribonucleoprotein binding;0.000314025239200348!GO:0009108;coenzyme biosynthetic process;0.000314025239200348!GO:0005769;early endosome;0.000315899367483422!GO:0005819;spindle;0.000325290116983241!GO:0016779;nucleotidyltransferase activity;0.000325974184097467!GO:0008219;cell death;0.000337175897323756!GO:0016265;death;0.000337175897323756!GO:0006261;DNA-dependent DNA replication;0.000337730606258321!GO:0000786;nucleosome;0.00034612767839247!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000380253416303017!GO:0008186;RNA-dependent ATPase activity;0.000402645004353338!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000460490283571144!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000513285543193377!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000526613583268759!GO:0009117;nucleotide metabolic process;0.000539317139779499!GO:0005875;microtubule associated complex;0.0005889812906286!GO:0016740;transferase activity;0.000640860786039786!GO:0031124;mRNA 3'-end processing;0.000643455801341743!GO:0030036;actin cytoskeleton organization and biogenesis;0.000677239798400799!GO:0008250;oligosaccharyl transferase complex;0.000724387709320655!GO:0006612;protein targeting to membrane;0.000788804609898857!GO:0051920;peroxiredoxin activity;0.000846774718995461!GO:0005657;replication fork;0.000901776733509777!GO:0030427;site of polarized growth;0.00103499851436706!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00107718024434716!GO:0030426;growth cone;0.00112440101513633!GO:0003682;chromatin binding;0.00113061655711887!GO:0004004;ATP-dependent RNA helicase activity;0.00114372089777988!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00117232257049535!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00117232257049535!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00117232257049535!GO:0000323;lytic vacuole;0.00120253194633551!GO:0005764;lysosome;0.00120253194633551!GO:0045449;regulation of transcription;0.00122841737655051!GO:0051087;chaperone binding;0.00130154099488238!GO:0022406;membrane docking;0.00140369546781518!GO:0048278;vesicle docking;0.00140369546781518!GO:0008361;regulation of cell size;0.00149853729865557!GO:0043681;protein import into mitochondrion;0.00159976428091003!GO:0015980;energy derivation by oxidation of organic compounds;0.00160781074855977!GO:0005869;dynactin complex;0.00164832105443239!GO:0048487;beta-tubulin binding;0.00167121781394878!GO:0000775;chromosome, pericentric region;0.00167121781394878!GO:0006383;transcription from RNA polymerase III promoter;0.00171317700763917!GO:0030118;clathrin coat;0.00172308644356356!GO:0004576;oligosaccharyl transferase activity;0.00183003779299008!GO:0001726;ruffle;0.00188441642067382!GO:0007051;spindle organization and biogenesis;0.00188441642067382!GO:0003746;translation elongation factor activity;0.00193223326547583!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00200535413024223!GO:0016049;cell growth;0.00201856239128703!GO:0051329;interphase of mitotic cell cycle;0.00203663909223889!GO:0003690;double-stranded DNA binding;0.00219291665685746!GO:0008287;protein serine/threonine phosphatase complex;0.0022755748160271!GO:0030135;coated vesicle;0.00246707715622481!GO:0006904;vesicle docking during exocytosis;0.00248206676394139!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00259156471225092!GO:0015399;primary active transmembrane transporter activity;0.00259156471225092!GO:0016197;endosome transport;0.00262459261351045!GO:0030867;rough endoplasmic reticulum membrane;0.00265861885006882!GO:0051128;regulation of cellular component organization and biogenesis;0.002720157873371!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00280369644119044!GO:0031072;heat shock protein binding;0.00287013692689535!GO:0045892;negative regulation of transcription, DNA-dependent;0.00307087744843357!GO:0005885;Arp2/3 protein complex;0.00307087744843357!GO:0031123;RNA 3'-end processing;0.00308845763033413!GO:0008180;signalosome;0.00310119012590846!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00331764611309847!GO:0007006;mitochondrial membrane organization and biogenesis;0.0033483721491242!GO:0000776;kinetochore;0.00338928704645425!GO:0005741;mitochondrial outer membrane;0.00339844019878588!GO:0016126;sterol biosynthetic process;0.00346257516079613!GO:0003684;damaged DNA binding;0.00349120289155122!GO:0050770;regulation of axonogenesis;0.00352610999748998!GO:0000059;protein import into nucleus, docking;0.00353022612738989!GO:0006891;intra-Golgi vesicle-mediated transport;0.00354356511368858!GO:0030133;transport vesicle;0.00355563032222973!GO:0051325;interphase;0.00359908118690397!GO:0005684;U2-dependent spliceosome;0.00366948481259496!GO:0016853;isomerase activity;0.00378785757767166!GO:0006405;RNA export from nucleus;0.00397604285328564!GO:0018196;peptidyl-asparagine modification;0.00400076921640826!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00400076921640826!GO:0048468;cell development;0.0040843408450191!GO:0006378;mRNA polyadenylation;0.0042567516746504!GO:0048500;signal recognition particle;0.00428108975564693!GO:0030137;COPI-coated vesicle;0.0043556953354489!GO:0031968;organelle outer membrane;0.0045776869485078!GO:0033116;ER-Golgi intermediate compartment membrane;0.00472229640289074!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00472229640289074!GO:0016859;cis-trans isomerase activity;0.00475336347558135!GO:0003711;transcription elongation regulator activity;0.0047715120941664!GO:0031902;late endosome membrane;0.00487714598184068!GO:0030880;RNA polymerase complex;0.00513553409603686!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00514196534721491!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00514196534721491!GO:0005637;nuclear inner membrane;0.00517301355254011!GO:0001558;regulation of cell growth;0.00518632815711661!GO:0006355;regulation of transcription, DNA-dependent;0.00520139781999921!GO:0006595;polyamine metabolic process;0.00523519813229403!GO:0046467;membrane lipid biosynthetic process;0.00544808857146082!GO:0030029;actin filament-based process;0.0055771673469551!GO:0006352;transcription initiation;0.00569709589812878!GO:0045454;cell redox homeostasis;0.00575048743268472!GO:0008139;nuclear localization sequence binding;0.00579740148179789!GO:0030521;androgen receptor signaling pathway;0.00583844957854839!GO:0008601;protein phosphatase type 2A regulator activity;0.00589756861773834!GO:0016563;transcription activator activity;0.00594002877733397!GO:0016585;chromatin remodeling complex;0.00594002877733397!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00596076534878988!GO:0046474;glycerophospholipid biosynthetic process;0.00608088941608988!GO:0031901;early endosome membrane;0.00668931543129065!GO:0005048;signal sequence binding;0.00670935289029381!GO:0003677;DNA binding;0.00684264806076525!GO:0019867;outer membrane;0.00712509344230377!GO:0016272;prefoldin complex;0.00729452659814055!GO:0006626;protein targeting to mitochondrion;0.00732422635420275!GO:0000159;protein phosphatase type 2A complex;0.00741901272913944!GO:0008312;7S RNA binding;0.00786729975482474!GO:0030176;integral to endoplasmic reticulum membrane;0.00800739132699163!GO:0000904;cellular morphogenesis during differentiation;0.00811155508601394!GO:0008094;DNA-dependent ATPase activity;0.00817822404143503!GO:0006695;cholesterol biosynthetic process;0.00818202422898945!GO:0016584;nucleosome positioning;0.00820351479452273!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00829972515110131!GO:0045047;protein targeting to ER;0.00829972515110131!GO:0048667;neuron morphogenesis during differentiation;0.00851256605330088!GO:0048812;neurite morphogenesis;0.00851256605330088!GO:0006818;hydrogen transport;0.00874431511335928!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00877349612755429!GO:0030030;cell projection organization and biogenesis;0.00900116930870215!GO:0048858;cell projection morphogenesis;0.00900116930870215!GO:0032990;cell part morphogenesis;0.00900116930870215!GO:0005774;vacuolar membrane;0.00903077427603264!GO:0004674;protein serine/threonine kinase activity;0.00915939616679658!GO:0006650;glycerophospholipid metabolic process;0.00916855155031314!GO:0030182;neuron differentiation;0.00923312613833059!GO:0008320;protein transmembrane transporter activity;0.00926394183642682!GO:0030516;regulation of axon extension;0.00948297931124608!GO:0015992;proton transport;0.00978091239097554!GO:0006402;mRNA catabolic process;0.00986107523400806!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00998864210543893!GO:0051252;regulation of RNA metabolic process;0.00998864210543893!GO:0006338;chromatin remodeling;0.0105533703196263!GO:0005832;chaperonin-containing T-complex;0.0108572383060135!GO:0007021;tubulin folding;0.0108629294237252!GO:0007019;microtubule depolymerization;0.0109446255388236!GO:0030663;COPI coated vesicle membrane;0.0110959414014121!GO:0030126;COPI vesicle coat;0.0110959414014121!GO:0006897;endocytosis;0.0111514650032536!GO:0010324;membrane invagination;0.0111514650032536!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0111837618263712!GO:0000428;DNA-directed RNA polymerase complex;0.0111837618263712!GO:0006892;post-Golgi vesicle-mediated transport;0.0117586304550378!GO:0000339;RNA cap binding;0.0118589845553418!GO:0008270;zinc ion binding;0.0119108864820915!GO:0016251;general RNA polymerase II transcription factor activity;0.0122590488366756!GO:0003678;DNA helicase activity;0.0126577807125915!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0126577807125915!GO:0005791;rough endoplasmic reticulum;0.0127271762517004!GO:0030384;phosphoinositide metabolic process;0.0129065228117776!GO:0005788;endoplasmic reticulum lumen;0.0133487564656752!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0134889817986143!GO:0000209;protein polyubiquitination;0.0135958181090606!GO:0007052;mitotic spindle organization and biogenesis;0.0136945932040829!GO:0019843;rRNA binding;0.0139093665707929!GO:0006839;mitochondrial transport;0.0144282273838646!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0147283300972818!GO:0016311;dephosphorylation;0.0148273049396339!GO:0030658;transport vesicle membrane;0.0150257057093789!GO:0043488;regulation of mRNA stability;0.0150452339951886!GO:0043487;regulation of RNA stability;0.0150452339951886!GO:0046489;phosphoinositide biosynthetic process;0.0151061826163173!GO:0009165;nucleotide biosynthetic process;0.0156396714661743!GO:0007409;axonogenesis;0.0162615053327203!GO:0048666;neuron development;0.0165526898965409!GO:0000792;heterochromatin;0.0166770193517423!GO:0031175;neurite development;0.0176854166927641!GO:0044452;nucleolar part;0.0177687030787993!GO:0006611;protein export from nucleus;0.0178430121660308!GO:0032508;DNA duplex unwinding;0.0179672359796313!GO:0032392;DNA geometric change;0.0179672359796313!GO:0035258;steroid hormone receptor binding;0.0182988592344424!GO:0006607;NLS-bearing substrate import into nucleus;0.0186139841798017!GO:0043022;ribosome binding;0.0186425517283393!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0190599847196607!GO:0055083;monovalent inorganic anion homeostasis;0.0190599847196607!GO:0055064;chloride ion homeostasis;0.0190599847196607!GO:0030644;cellular chloride ion homeostasis;0.0190599847196607!GO:0043414;biopolymer methylation;0.0192821136030042!GO:0022008;neurogenesis;0.0194168152228528!GO:0006376;mRNA splice site selection;0.0200368494491648!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0200368494491648!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0200368494491648!GO:0005092;GDP-dissociation inhibitor activity;0.0207228627960106!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0210812087402395!GO:0006401;RNA catabolic process;0.0210812087402395!GO:0043067;regulation of programmed cell death;0.0214639286375084!GO:0042981;regulation of apoptosis;0.0215495697645788!GO:0043631;RNA polyadenylation;0.0216764565689228!GO:0040029;regulation of gene expression, epigenetic;0.0221513128272972!GO:0005876;spindle microtubule;0.0223663639958863!GO:0000910;cytokinesis;0.0229168147898775!GO:0008022;protein C-terminus binding;0.0230003964212182!GO:0043492;ATPase activity, coupled to movement of substances;0.0245941559042013!GO:0032259;methylation;0.0246237460067038!GO:0030660;Golgi-associated vesicle membrane;0.0251129029615282!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0252706868158855!GO:0005669;transcription factor TFIID complex;0.0255836499126028!GO:0044437;vacuolar part;0.0256165243789832!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0260679571791791!GO:0048699;generation of neurons;0.026943463054973!GO:0006284;base-excision repair;0.0270186739318503!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0271174890895515!GO:0006643;membrane lipid metabolic process;0.0271954461911066!GO:0000049;tRNA binding;0.0276665461837876!GO:0043284;biopolymer biosynthetic process;0.028228986661729!GO:0005765;lysosomal membrane;0.0288222754171786!GO:0051539;4 iron, 4 sulfur cluster binding;0.028867025802959!GO:0019208;phosphatase regulator activity;0.0293623287469958!GO:0051287;NAD binding;0.0293623287469958!GO:0006672;ceramide metabolic process;0.0296133265262376!GO:0012506;vesicle membrane;0.0300451099571408!GO:0019887;protein kinase regulator activity;0.0300641955703451!GO:0042585;germinal vesicle;0.0305642646841698!GO:0007050;cell cycle arrest;0.0311279686655784!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0316771515215898!GO:0050811;GABA receptor binding;0.0316771515215898!GO:0043086;negative regulation of catalytic activity;0.0320732213850119!GO:0006289;nucleotide-excision repair;0.0321179207686557!GO:0022890;inorganic cation transmembrane transporter activity;0.032234781175005!GO:0031114;regulation of microtubule depolymerization;0.032234781175005!GO:0007026;negative regulation of microtubule depolymerization;0.032234781175005!GO:0032594;protein transport within lipid bilayer;0.032234781175005!GO:0032907;transforming growth factor-beta3 production;0.032234781175005!GO:0032596;protein transport into lipid raft;0.032234781175005!GO:0032910;regulation of transforming growth factor-beta3 production;0.032234781175005!GO:0032595;B cell receptor transport within lipid bilayer;0.032234781175005!GO:0033606;chemokine receptor transport within lipid bilayer;0.032234781175005!GO:0032600;chemokine receptor transport out of lipid raft;0.032234781175005!GO:0032599;protein transport out of lipid raft;0.032234781175005!GO:0032597;B cell receptor transport into lipid raft;0.032234781175005!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.032234781175005!GO:0031371;ubiquitin conjugating enzyme complex;0.0323940625397251!GO:0050769;positive regulation of neurogenesis;0.0327680157371564!GO:0050772;positive regulation of axonogenesis;0.0328467723374673!GO:0019207;kinase regulator activity;0.0346246442037339!GO:0004448;isocitrate dehydrogenase activity;0.0352201936180702!GO:0030518;steroid hormone receptor signaling pathway;0.0352228154444211!GO:0005938;cell cortex;0.0352228154444211!GO:0031301;integral to organelle membrane;0.0356924365354791!GO:0022884;macromolecule transmembrane transporter activity;0.0371474157667783!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0371474157667783!GO:0006302;double-strand break repair;0.0372048709249245!GO:0048489;synaptic vesicle transport;0.0372444187904854!GO:0017134;fibroblast growth factor binding;0.0373471284040692!GO:0005784;translocon complex;0.0373678752576917!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0375009657190263!GO:0010257;NADH dehydrogenase complex assembly;0.0375009657190263!GO:0033108;mitochondrial respiratory chain complex assembly;0.0375009657190263!GO:0031529;ruffle organization and biogenesis;0.0377709107501371!GO:0030132;clathrin coat of coated pit;0.0381395436958292!GO:0009311;oligosaccharide metabolic process;0.0386635557156116!GO:0007059;chromosome segregation;0.0388146527786367!GO:0008286;insulin receptor signaling pathway;0.0388146527786367!GO:0006509;membrane protein ectodomain proteolysis;0.0388238606212323!GO:0033619;membrane protein proteolysis;0.0388238606212323!GO:0046519;sphingoid metabolic process;0.0388238606212323!GO:0033673;negative regulation of kinase activity;0.0388238606212323!GO:0006469;negative regulation of protein kinase activity;0.0388238606212323!GO:0019902;phosphatase binding;0.0392547537893949!GO:0051789;response to protein stimulus;0.039481444235006!GO:0006986;response to unfolded protein;0.039481444235006!GO:0030134;ER to Golgi transport vesicle;0.0395107573456941!GO:0051052;regulation of DNA metabolic process;0.0395107573456941!GO:0006268;DNA unwinding during replication;0.0395107573456941!GO:0007004;telomere maintenance via telomerase;0.0398426203053813!GO:0044433;cytoplasmic vesicle part;0.0400674901098294!GO:0005871;kinesin complex;0.0401430681104573!GO:0003730;mRNA 3'-UTR binding;0.0403830118116028!GO:0030032;lamellipodium biogenesis;0.0411489369848434!GO:0016050;vesicle organization and biogenesis;0.0411622197795516!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0412638673495433!GO:0007033;vacuole organization and biogenesis;0.0416650705002474!GO:0030119;AP-type membrane coat adaptor complex;0.0416933273142851!GO:0005862;muscle thin filament tropomyosin;0.0419835597717116!GO:0008097;5S rRNA binding;0.0421269362445833!GO:0000228;nuclear chromosome;0.0425678015846673!GO:0008276;protein methyltransferase activity;0.0426962199055979!GO:0005521;lamin binding;0.0426962199055979!GO:0050681;androgen receptor binding;0.0438720809287318!GO:0042393;histone binding;0.0451091432062621!GO:0019894;kinesin binding;0.04567092841726!GO:0042026;protein refolding;0.0458014195130072!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0460193196859665!GO:0003727;single-stranded RNA binding;0.0462135387543147!GO:0000075;cell cycle checkpoint;0.0473221263453036!GO:0030127;COPII vesicle coat;0.0473573180371836!GO:0012507;ER to Golgi transport vesicle membrane;0.0473573180371836!GO:0001725;stress fiber;0.0474861263590256!GO:0032432;actin filament bundle;0.0474861263590256!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0477327672800129!GO:0015002;heme-copper terminal oxidase activity;0.0477327672800129!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0477327672800129!GO:0004129;cytochrome-c oxidase activity;0.0477327672800129!GO:0051540;metal cluster binding;0.0481326906308807!GO:0051536;iron-sulfur cluster binding;0.0481326906308807!GO:0019717;synaptosome;0.0483611351845497!GO:0030149;sphingolipid catabolic process;0.0489911288357281!GO:0065009;regulation of a molecular function;0.0489911288357281!GO:0030911;TPR domain binding;0.0493453413475085!GO:0030175;filopodium;0.0493453413475085!GO:0046426;negative regulation of JAK-STAT cascade;0.0494774733491508
 |sample_id=11574
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=brain
 |top_motifs=SOX2:4.05348213867;NKX2-3_NKX2-5:3.39467223967;ADNP_IRX_SIX_ZHX:3.02984321104;T:3.01588172858;POU5F1:2.7423049541;PRRX1,2:2.66331302662;MZF1:2.51104411848;CDC5L:2.47834979718;JUN:2.34142461972;OCT4_SOX2{dimer}:2.32695619756;LEF1_TCF7_TCF7L1,2:2.29482557292;PAX8:2.28521349474;SOX{8,9,10}:2.2744151131;NANOG:2.1514813503;LHX3,4:2.1277349074;SOX17:2.10965035662;FOXM1:1.9769605092;STAT1,3:1.97046762218;TFDP1:1.94532882285;RFX1:1.92092197089;ZFP161:1.86299376352;NHLH1,2:1.86089782143;GFI1:1.85598016355;MED-1{core}:1.83806611076;CUX2:1.72290028678;MTE{core}:1.692212784;NKX6-1,2:1.60561213055;PATZ1:1.55810396099;ARID5B:1.47908639093;NRF1:1.4327579677;ONECUT1,2:1.40368234051;PRDM1:1.36292301559;ZNF143:1.35471397276;GTF2I:1.32753070572;MAZ:1.31988585564;ZIC1..3:1.31932218804;ATF2:1.24386388946;HOX{A4,D4}:1.24123732118;EGR1..3:1.23027783954;PAX5:1.21985999219;ZBTB6:1.21521388116;BREu{core}:1.21322116073;IKZF2:1.19951349092;PAX4:1.17507874221;ZNF384:1.17506370516;FOXD3:1.16755426124;RREB1:1.16138128545;PBX1:1.13548686548;REST:1.13416723052;YY1:1.13337152486;AHR_ARNT_ARNT2:1.1305123237;POU6F1:1.10715908542;DBP:1.10198023136;POU1F1:1.08492486829;POU3F1..4:1.07952131185;FOXP3:1.07383535652;NR1H4:1.06512477996;PAX1,9:1.04782415382;GATA4:1.04372355849;TFAP2B:1.03446225276;NFY{A,B,C}:0.998223187068;SMAD1..7,9:0.985196341634;RBPJ:0.979747228062;SOX5:0.955057990426;LMO2:0.925063995831;TGIF1:0.868231676177;PAX6:0.856388937165;GTF2A1,2:0.824842366754;GCM1,2:0.820270930199;VSX1,2:0.814611889237;KLF4:0.808830298222;GFI1B:0.800688507252;TEF:0.770079497801;MYFfamily:0.765890786834;ZNF423:0.746551913155;CRX:0.711773096121;TLX2:0.700124293114;ELK1,4_GABP{A,B1}:0.696406761609;CDX1,2,4:0.678720083879;HAND1,2:0.671197242229;HOXA9_MEIS1:0.636555553432;ATF4:0.616183265043;HBP1_HMGB_SSRP1_UBTF:0.613845408263;CREB1:0.609796577329;E2F1..5:0.606239539224;HIC1:0.591260806279;RFX2..5_RFXANK_RFXAP:0.588935783263;GZF1:0.551234275072;FOXL1:0.53643547888;POU2F1..3:0.486663640757;XCPE1{core}:0.466194838065;PPARG:0.456236895648;EVI1:0.444494154366;FOXP1:0.408679264615;RORA:0.352240007657;MYB:0.286069679496;NR6A1:0.278779592505;MAFB:0.228428179013;EP300:0.224751341592;FOXQ1:0.219933007327;PAX3,7:0.210432158756;MTF1:0.210368745501;TBP:0.20422448385;HSF1,2:0.198294324321;PDX1:0.164802316398;TLX1..3_NFIC{dimer}:0.155132210012;NKX3-2:0.15165917608;SP1:0.117270107261;EN1,2:0.113657975594;ATF5_CREB3:0.0875669490751;NR3C1:0.0617298818026;UFEwm:0.00296685047141;BPTF:-0.0294141892126;NKX3-1:-0.0480479293429;NFIX:-0.0508311451356;MEF2{A,B,C,D}:-0.0558844055171;MYBL2:-0.0600572807616;NFE2L2:-0.0744993779409;SPZ1:-0.0822401846915;SREBF1,2:-0.13702356205;NANOG{mouse}:-0.144360247086;NFIL3:-0.146673496932;DMAP1_NCOR{1,2}_SMARC:-0.148462535789;HMGA1,2:-0.165612749507;ALX1:-0.173131970638;AR:-0.186144472172;HNF1A:-0.191060049884;XBP1:-0.191689906409;TOPORS:-0.243784358851;FOXN1:-0.267384157206;ESRRA:-0.277964720303;STAT2,4,6:-0.281682625708;ZBTB16:-0.299515429021;GATA6:-0.307929977778;EBF1:-0.314458765761;SRF:-0.317093430141;NFE2L1:-0.318209634296;SPIB:-0.319512788318;NKX2-2,8:-0.327393443666;PAX2:-0.329520389846;bHLH_family:-0.337877459423;FOS_FOS{B,L1}_JUN{B,D}:-0.347782828156;STAT5{A,B}:-0.369610044075;RUNX1..3:-0.36975678427;HNF4A_NR2F1,2:-0.391078457975;AIRE:-0.426758346488;MYOD1:-0.431970706639;FOSL2:-0.441964934717;BACH2:-0.459722704993;IRF7:-0.484265233438;ZEB1:-0.491433985011;FOX{D1,D2}:-0.493594732871;HOX{A5,B5}:-0.494248576523;FOXA2:-0.500175844707;SPI1:-0.50306342661;TP53:-0.508159370688;SNAI1..3:-0.513281556537;FOX{F1,F2,J1}:-0.52117676291;NFE2:-0.537103033369;ATF6:-0.55720658706;TAL1_TCF{3,4,12}:-0.576418459892;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.580802958845;CEBPA,B_DDIT3:-0.61431969721;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.641989020825;IKZF1:-0.660629548467;TEAD1:-0.688061692785;NFKB1_REL_RELA:-0.688369117863;TFAP4:-0.690725068957;TBX4,5:-0.716797645766;PITX1..3:-0.719760614475;TFCP2:-0.738826961728;ALX4:-0.743797108651;ZNF238:-0.757007526043;IRF1,2:-0.776958461648;HLF:-0.794771745526;NKX2-1,4:-0.831003014801;NFATC1..3:-0.842047964211;ETS1,2:-0.876375815606;ESR1:-0.892526826625;FOX{I1,J2}:-0.899843095178;HMX1:-0.953480798596;ZNF148:-0.960641897036;GLI1..3:-0.982699609256;NR5A1,2:-1.01339417062;FOXO1,3,4:-1.01502424641;ELF1,2,4:-1.01665573519;HES1:-1.07137290814;TFAP2{A,C}:-1.42911511653;RXRA_VDR{dimer}:-1.45911386277;HOX{A6,A7,B6,B7}:-1.49292680829;HIF1A:-1.57759173285;RXR{A,B,G}:-1.64486797741
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11574-120E8;search_select_hide=table117:FF:11574-120E8
 }}

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FF:11574-120E8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:10, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0