FF:14305-155C3: Difference between revisions

Latest revision as of 19:06, 4 June 2020

Name:	Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	CNhs12398
Sample type:	fractionations and perturbations
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	7 month old child
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005618

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12398		CAGE		DRX008040		DRR008912

Accession ID Hg19

Library id		BAM		CTSS
CNhs12398		DRZ000337		DRZ001722

Accession ID Hg38

Library id		BAM		CTSS
CNhs12398		DRZ011687		DRZ013072

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.261
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.277
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.869
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.659
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.174
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.117
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.776
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.132
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.199
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.106
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.443
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.584
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0155
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0976
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0711
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.116
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.162
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.233
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.721
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.233
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.542
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.927
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.995
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12398

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0969
MA0003.1	MA0003.1	0.48
MA0004.1	MA0004.1	0.0276
MA0006.1	MA0006.1	0.607
MA0007.1	MA0007.1	0.156
MA0009.1	MA0009.1	0.464
MA0014.1	MA0014.1	0.373
MA0017.1	MA0017.1	0.00408
MA0018.2	MA0018.2	0.53
MA0019.1	MA0019.1	0.491
MA0024.1	MA0024.1	0.232
MA0025.1	MA0025.1	0.0174
MA0027.1	MA0027.1	0.844
MA0028.1	MA0028.1	0.208
MA0029.1	MA0029.1	0.802
MA0030.1	MA0030.1	0.154
MA0031.1	MA0031.1	0.0834
MA0035.2	MA0035.2	8.05032e-5
MA0038.1	MA0038.1	0.934
MA0039.2	MA0039.2	0.023
MA0040.1	MA0040.1	0.594
MA0041.1	MA0041.1	0.797
MA0042.1	MA0042.1	0.852
MA0043.1	MA0043.1	0.122
MA0046.1	MA0046.1	0.359
MA0047.2	MA0047.2	0.844
MA0048.1	MA0048.1	0.00683
MA0050.1	MA0050.1	0.00112
MA0051.1	MA0051.1	0.00315
MA0052.1	MA0052.1	0.317
MA0055.1	MA0055.1	0.6
MA0057.1	MA0057.1	0.651
MA0058.1	MA0058.1	0.00855
MA0059.1	MA0059.1	0.0357
MA0060.1	MA0060.1	0.239
MA0061.1	MA0061.1	6.06367e-4
MA0062.2	MA0062.2	0.0187
MA0065.2	MA0065.2	0.00161
MA0066.1	MA0066.1	0.756
MA0067.1	MA0067.1	0.855
MA0068.1	MA0068.1	0.575
MA0069.1	MA0069.1	0.0129
MA0070.1	MA0070.1	0.319
MA0071.1	MA0071.1	0.201
MA0072.1	MA0072.1	0.257
MA0073.1	MA0073.1	0.71
MA0074.1	MA0074.1	0.46
MA0076.1	MA0076.1	0.722
MA0077.1	MA0077.1	0.233
MA0078.1	MA0078.1	0.627
MA0079.2	MA0079.2	0.123
MA0080.2	MA0080.2	1.35004e-8
MA0081.1	MA0081.1	0.0377
MA0083.1	MA0083.1	3.7531e-4
MA0084.1	MA0084.1	0.639
MA0087.1	MA0087.1	0.437
MA0088.1	MA0088.1	0.208
MA0090.1	MA0090.1	1.7326e-4
MA0091.1	MA0091.1	0.855
MA0092.1	MA0092.1	0.717
MA0093.1	MA0093.1	0.0461
MA0099.2	MA0099.2	0.941
MA0100.1	MA0100.1	0.432
MA0101.1	MA0101.1	9.23601e-5
MA0102.2	MA0102.2	0.193
MA0103.1	MA0103.1	7.02537e-6
MA0104.2	MA0104.2	2.46938e-4
MA0105.1	MA0105.1	0.0403
MA0106.1	MA0106.1	0.216
MA0107.1	MA0107.1	1.59764e-4
MA0108.2	MA0108.2	0.106
MA0111.1	MA0111.1	0.138
MA0112.2	MA0112.2	0.538
MA0113.1	MA0113.1	0.492
MA0114.1	MA0114.1	0.00152
MA0115.1	MA0115.1	0.0334
MA0116.1	MA0116.1	0.502
MA0117.1	MA0117.1	0.404
MA0119.1	MA0119.1	0.726
MA0122.1	MA0122.1	0.268
MA0124.1	MA0124.1	0.0806
MA0125.1	MA0125.1	0.149
MA0131.1	MA0131.1	0.754
MA0135.1	MA0135.1	0.484
MA0136.1	MA0136.1	2.74773e-7
MA0137.2	MA0137.2	0.111
MA0138.2	MA0138.2	0.653
MA0139.1	MA0139.1	0.408
MA0140.1	MA0140.1	0.0123
MA0141.1	MA0141.1	0.00466
MA0142.1	MA0142.1	0.1
MA0143.1	MA0143.1	0.996
MA0144.1	MA0144.1	0.196
MA0145.1	MA0145.1	0.925
MA0146.1	MA0146.1	0.0688
MA0147.1	MA0147.1	0.0044
MA0148.1	MA0148.1	0.212
MA0149.1	MA0149.1	0.152
MA0150.1	MA0150.1	0.0932
MA0152.1	MA0152.1	0.212
MA0153.1	MA0153.1	0.991
MA0154.1	MA0154.1	0.598
MA0155.1	MA0155.1	0.724
MA0156.1	MA0156.1	0.00384
MA0157.1	MA0157.1	0.123
MA0159.1	MA0159.1	0.176
MA0160.1	MA0160.1	4.73799e-4
MA0162.1	MA0162.1	0.0318
MA0163.1	MA0163.1	0.537
MA0164.1	MA0164.1	0.59
MA0258.1	MA0258.1	0.374
MA0259.1	MA0259.1	0.27

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12398

Novel motif	Logo	P-value
1	1	0.0768
10	10	0.376
100	100	0.486
101	101	0.309
102	102	0.0758
103	103	0.313
104	104	0.929
105	105	0.529
106	106	0.126
107	107	0.975
108	108	0.919
109	109	0.013
11	11	0.129
110	110	0.624
111	111	0.0703
112	112	0.602
113	113	0.0163
114	114	0.322
115	115	0.262
116	116	0.779
117	117	0.105
118	118	0.414
119	119	0.307
12	12	0.937
120	120	0.754
121	121	0.838
122	122	0.0595
123	123	0.00104
124	124	0.063
125	125	0.704
126	126	0.233
127	127	0.516
128	128	0.188
129	129	0.107
13	13	0.619
130	130	0.991
131	131	0.399
132	132	0.623
133	133	0.328
134	134	0.923
135	135	0.837
136	136	0.131
137	137	0.918
138	138	0.533
139	139	0.108
14	14	0.447
140	140	0.608
141	141	0.214
142	142	0.984
143	143	0.667
144	144	0.719
145	145	0.928
146	146	0.142
147	147	0.158
148	148	0.11
149	149	0.266
15	15	0.0534
150	150	0.608
151	151	0.131
152	152	0.479
153	153	0.648
154	154	0.482
155	155	0.0167
156	156	0.589
157	157	0.34
158	158	0.108
159	159	0.715
16	16	0.806
160	160	0.257
161	161	0.022
162	162	0.581
163	163	0.382
164	164	0.91
165	165	0.703
166	166	0.00483
167	167	0.314
168	168	0.991
169	169	0.853
17	17	0.719
18	18	0.759
19	19	0.257
2	2	0.897
20	20	0.418
21	21	0.502
22	22	0.825
23	23	0.801
24	24	0.37
25	25	0.126
26	26	0.896
27	27	0.488
28	28	0.688
29	29	0.958
3	3	0.445
30	30	0.569
31	31	0.667
32	32	8.05793e-7
33	33	0.215
34	34	0.611
35	35	0.515
36	36	0.0245
37	37	0.72
38	38	0.278
39	39	0.978
4	4	0.35
40	40	0.0466
41	41	0.78
42	42	0.286
43	43	0.451
44	44	0.373
45	45	0.492
46	46	0.499
47	47	0.128
48	48	0.332
49	49	0.0708
5	5	0.734
50	50	0.799
51	51	0.466
52	52	0.645
53	53	0.323
54	54	0.486
55	55	0.533
56	56	0.294
57	57	0.994
58	58	0.119
59	59	0.73
6	6	0.872
60	60	0.309
61	61	0.144
62	62	0.0841
63	63	0.565
64	64	0.207
65	65	0.473
66	66	0.43
67	67	0.813
68	68	0.866
69	69	0.676
7	7	0.0684
70	70	0.0748
71	71	0.804
72	72	0.271
73	73	0.448
74	74	0.323
75	75	0.0754
76	76	0.534
77	77	0.898
78	78	0.0126
79	79	0.149
8	8	0.181
80	80	0.551
81	81	0.38
82	82	0.725
83	83	0.0539
84	84	0.362
85	85	0.683
86	86	0.521
87	87	0.486
88	88	0.721
89	89	0.923
9	9	0.969
90	90	0.237
91	91	0.8
92	92	0.429
93	93	0.641
94	94	0.556
95	95	0.016
96	96	0.735
97	97	0.531
98	98	0.0486
99	99	0.521

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12398

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
FF:0000670 human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
0000406 (nuclear fraction sample)
0000670 (human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000467,UBERON:0001062,UBERON:0003102,UBERON:0002416
+|DRA_sample_Accession=CAGE@SAMD00005618
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002620
+|accession_numbers=CAGE;DRX008040;DRR008912;DRZ000337;DRZ001722;DRZ011687;DRZ013072
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000251,FF:0000406,FF:0000670
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.67!471.45!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!2.05!297.50!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!51.83!HOXC5;;chr20:50179368..50179392,-!p2@NFATC2!1.70!62.48!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.63!41.18!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.55!56.80!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.37!MEIS2;;chr10:28034739..28034756,-!p1@MKX!1.48!29.47!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.44!39.05!MYBL1;;chr19:45971246..45971265,+!p1@FOSB!1.42!451.22!FOSB;;chr11:46299539..46299620,+!p2@CREB3L1!1.42!41.89!CREB3L1;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!123.19!CREB3L1;;chr2:176969228..176969260,+!p1@HOXD11!1.40!24.14!HOXD11;;chr2:176969097..176969109,+!p3@HOXD11!1.38!22.72!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.85!PRRX1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.95!LHX9;;chr6:19837592..19837621,+!p1@ID4!1.31!116.09!ID4;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.46!KDM5D;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.46!HOXD11;;chr15:37392703..37392717,-!p8@MEIS2!1.28!25.56!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!1.26!53.25!MEIS2;;chr3:147111231..147111281,+!p3@ZIC1!1.24!16.33!ZIC1;;chr15:37392724..37392757,-!p1@MEIS2!1.22!69.94!MEIS2;;chr15:37390850..37390909,-!p3@MEIS2!1.21!29.82!MEIS2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.20!EMX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.19!FOXD1;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.85!IRX2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.85!HOXA9;;chr14:75745523..75745537,+!p1@FOS!1.16!1601.09!FOS;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.40!PRRX2;;chr11:46316699..46316719,+!p10@CREB3L1!1.15!13.14!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.14!12.78!ZIC1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.13!12.43!RUNX1T1;;chr18:22932080..22932170,-!p1@ZNF521!1.11!50.41!ZNF521;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.72!HAND2;;chr1:197886665..197886732,+!p3@LHX9!1.10!11.72!LHX9;;chr20:55204351..55204377,+!p1@TFAP2C!1.09!14.56!TFAP2C;;chr2:102091566..102091581,-!p1@RFX8!1.09!11.36!RFX8;;chr2:176969124..176969155,+!p5@HOXD11!1.09!11.36!HOXD11;;chr5:321810..321877,+!p1@AHRR!1.08!35.50!AHRR;;chr7:27224842..27224872,-!p1@HOXA11!1.08!11.01!HOXA11;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.65!HOXD3;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.36!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.04!9.94!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.02!22.72!NFATC4;;chr21:36260773..36260804,-!p7@RUNX1!1.02!12.78!RUNX1;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.49!SATB2;;chr15:37390482..37390572,-!p7@MEIS2!1.01!12.78!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!1.01!11.36!MEIS2;;chr5:158526917..158526932,-!p1@EBF1!0.98!22.01!EBF1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!14.91!CREB3L2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.72!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.98!8.52!DLX1;;chr12:115121962..115121987,-!p1@TBX3!0.97!72.78!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!0.97!11.01!PRDM8;;chr7:42276787..42276815,-!p1@GLI3!0.96!22.37!GLI3;;chr5:72743793..72743855,-!p4@FOXD1!0.96!9.59!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.86!ZBTB20;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.59!RFX3;;chr15:37392593..37392607,-!p13@MEIS2!0.95!9.59!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.52!GLIS1;;chr12:124873357..124873401,-!p1@NCOR2!0.94!93.72!NCOR2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.81!HOXC5;;chr7:27205106..27205134,-!p2@HOXA9!0.94!7.81!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!0.93!175.73!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.93!106.50!ARID5B;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.46!PRRX1;;chr10:114710244..114710257,+!p3@TCF7L2!0.91!20.24!TCF7L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.91!8.88!TFAP2A;;chr8:93074848..93074871,-!p3@RUNX1T1!0.91!7.10!RUNX1T1;;chrY:21906761..21906810,-!p2@KDM5D!0.91!7.10!KDM5D;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.10!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.90!7.81!CREB3L1;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.14!MEIS1;;chr2:208031943..208031978,-!p5@KLF7!0.89!9.23!KLF7;;chr3:147111505..147111529,+!p6@ZIC1!0.89!6.75!ZIC1;;chr6:100912752..100912778,-!p2@SIM1!0.89!6.75!SIM1;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.75!HOXA11;;chr16:51185172..51185197,-!p1@SALL1!0.89!6.75!SALL1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.01!TWIST2;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.82!OSR1;;chr2:239756739..239756755,+!p2@TWIST2!0.88!11.72!TWIST2;;chr17:38256799..38256815,-!p3@NR1D1!0.87!12.07!NR1D1;;chr2:102091144..102091183,-!p2@RFX8!0.87!6.39!RFX8;;chr4:174450089..174450153,-!p2@HAND2!0.87!6.39!HAND2;;chr10:119302645..119302712,+!p3@EMX2!0.87!6.39!EMX2;;chr18:53254566..53254567,-!p8@TCF4!0.86!10.65!TCF4;;chr12:52445218..52445237,+!p1@NR4A1!0.85!82.36!NR4A1;;chr1:200379104..200379128,-!p2@ZNF281!0.85!15.62!ZNF281;;chr3:147127142..147127168,+!p1@ZIC1!0.85!6.04!ZIC1;;chr1:59249688..59249703,-!p3@JUN!0.84!37.99!JUN;;chr12:80085061..80085119,-!p6@PAWR!0.82!9.23!PAWR;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.68!HOXD8;;chr4:111558135..111558198,-!p2@PITX2!0.82!5.68!PITX2;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.68!HOXA10;;chr1:170633058..170633084,+!p5@PRRX1!0.82!5.68!PRRX1;;chr7:150945754..150945789,-!p2@SMARCD3!0.81!17.75!SMARCD3;;chr9:102584262..102584276,+!p1@NR4A3!0.81!12.78!NR4A3;;chr2:121493425..121493474,+!p1@GLI2!0.81!12.78!GLI2;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.24!RUNX1;;chr21:36259445..36259519,-!p4@RUNX1!0.80!15.98!RUNX1;;chr15:37390374..37390422,-!p9@MEIS2!0.80!6.75!MEIS2;;chr5:2751785..2751808,-!p2@IRX2!0.80!5.33!IRX2;;chr2:172949484..172949522,+!p1@DLX1!0.80!5.33!DLX1;;chr12:53614115..53614154,-!p1@RARG!0.79!29.82!RARG;;chr7:44143978..44143989,+!p2@AEBP1!0.79!9.94!AEBP1;;chr5:137801160..137801176,+!p1@EGR1!0.78!545.29!EGR1;;chr20:30193083..30193098,+!p1@ID1!0.78!440.92!ID1;;chr17:46125685..46125699,+!p3@NFE2L1!0.78!18.82!NFE2L1;;chr19:58220517..58220583,-!p1@ZNF154!0.78!17.04!ZNF154;;chr5:72744562..72744573,-!p3@FOXD1!0.78!6.39!FOXD1;;chr3:21792585..21792625,-!p2@ZNF385D!0.78!5.68!ZNF385D;;chr5:3595977..3595999,+!p1@IRX1!0.78!4.97!IRX1;;chr8:93115445..93115462,-!p7@RUNX1T1!0.78!4.97!RUNX1T1;;chr1:119530493..119530572,-!p1@TBX15!0.78!4.97!TBX15;;chr10:119302232..119302265,+!p1@EMX2!0.78!4.97!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.78!4.97!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.78!4.97!TBX5;;chr10:63661437..63661465,+!p2@ARID5B!0.77!101.53!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.77!33.73!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.77!7.46!NFIX;;chrX:128657457..128657475,-!p1@SMARCA1!0.76!60.00!SMARCA1;;chr14:62162258..62162269,+!p2@HIF1A!0.76!50.06!HIF1A;;chr11:12696071..12696086,+!p3@TEAD1!0.76!6.39!TEAD1;;chr10:63809134..63809145,+!p6@ARID5B!0.75!11.36!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.75!10.65!ARID5B;;chr21:36260295..36260310,-!p3@RUNX1!0.75!7.81!RUNX1;;chr3:157823517..157823562,-!p1@SHOX2!0.75!4.97!SHOX2;;chr2:172967276..172967296,-!p3@DLX2!0.75!4.62!DLX2;;chr2:66662396..66662407,+!p4@MEIS1!0.75!4.62!MEIS1;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.62!NPAS1;;chr1:119530636..119530653,-!p2@TBX15!0.75!4.62!TBX15;;chr10:119302268..119302282,+!p4@EMX2!0.75!4.62!EMX2;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.62!HOXC8;;chr15:37392094..37392116,-!p6@MEIS2!0.74!5.68!MEIS2;;chr2:208394817..208394834,+!p3@CREB1!0.73!19.53!CREB1;;chr4:95128841..95128865,+!p4@SMARCAD1!0.73!9.59!SMARCAD1;;chr6:144329384..144329405,-!p1@PLAGL1!0.72!55.74!PLAGL1;;chr1:59249645..59249656,-!p4@JUN!0.72!11.72!JUN;;chr2:121493492..121493537,+!p2@GLI2!0.72!7.46!GLI2;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.46!FOXD1;;chr5:43067636..43067674,+!p6@ZNF131!0.72!6.04!ZNF131;;chr1:170633262..170633285,+!p3@PRRX1!0.72!4.97!PRRX1;;chr5:158527139..158527161,-!p5@EBF1!0.72!4.26!EBF1;;chr7:1577076..1577095,+!p5@MAFK!0.72!4.26!MAFK;;chr2:100721881..100721904,-!p6@AFF3!0.72!4.26!AFF3;;chr2:66662895..66662907,+!p3@MEIS1!0.71!5.33!MEIS1;;chr1:23885981..23886002,-!p1@ID3!0.70!807.29!ID3;;chr1:59249707..59249727,-!p1@JUN!0.70!190.64!JUN;;chr9:4300050..4300118,-!p1@GLIS3!0.70!29.47!GLIS3;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.34!NCOR2;;chr10:63809013..63809041,+!p3@ARID5B!0.70!24.85!ARID5B;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.59!DRAP1;;chr19:45972701..45972774,+!p2@FOSB!0.70!5.68!FOSB;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.62!TCF4;;chr8:49833978..49833996,-!p1@SNAI2!0.69!91.24!SNAI2;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.62!BNC1;;chr15:57511589..57511608,+!p4@TCF12!0.69!3.91!TCF12;;chr19:9609272..9609297,-!p1@ZNF560!0.69!3.91!ZNF560;;chr8:93115274..93115323,-!p4@RUNX1T1!0.69!3.91!RUNX1T1;;chr7:17338266..17338282,+!p1@AHR!0.68!46.51!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.68!26.27!RFX2;;chr5:137804484..137804498,+!p2@EGR1!0.68!17.04!EGR1;;chrX:106960180..106960197,-!p2@TSC22D3!0.68!16.33!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!0.68!5.33!THAP2;;chr7:44143997..44144008,+!p3@AEBP1!0.68!4.97!AEBP1;;chr9:102584241..102584261,+!p4@NR4A3!0.67!6.04!NR4A3;;chr19:49864746..49864780,-!p2@TEAD2!0.67!5.33!TEAD2;;chr12:125002739..125002756,-!p6@NCOR2!0.66!5.68!NCOR2;;chr10:28035133..28035148,-!p3@MKX!0.66!3.55!MKX;;chr11:46333934..46333963,+!p5@CREB3L1!0.66!3.55!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.66!3.55!TBX3;;chr14:74256981..74256994,-!p16@C14orf43!0.66!3.55!C14orf43;;chr2:100721328..100721348,-!p4@AFF3!0.66!3.55!AFF3;;chr2:172967242..172967265,-!p2@DLX2!0.66!3.55!DLX2;;chr3:138665937..138665968,-!p1@FOXL2!0.66!3.55!FOXL2;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr1:170632477..170632506,+!p6@PRRX1!0.66!3.55!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.66!3.55!PRRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.66!3.55!RUNX1T1;;chr19:16435625..16435682,+!p1@KLF2!0.65!130.64!KLF2;;chr17:38256822..38256851,-!p1@NR1D1!0.65!31.95!NR1D1;;chr12:66218598..66218645,+!p2@HMGA2!0.65!18.46!HMGA2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.65!16.69!LRRFIP2;;chr21:36260343..36260402,-!p6@RUNX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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:14305-155C3
-|is_a=EFO:0002091;;FF:0000210;;FF:0000670
+|is_a=FF:0000670
+|is_obsolete=
+|library_id=CNhs12398
+|library_id_phase_based=2:CNhs12398
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14305
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14305
 |name=Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12398,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=155
 |rna_catalog_number=custom
@@ Line 57: / Line 78: @@
 |rna_weight_ug=19.7375
 |sample_age=7 month old child
+|sample_category=fractionations and perturbations
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 91: @@
 |sample_ethnicity=C
 |sample_experimental_condition=nuclear RNA
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.20343336213407e-212!GO:0043226;organelle;3.2579555970278e-167!GO:0043229;intracellular organelle;6.65961734103135e-167!GO:0043231;intracellular membrane-bound organelle;2.39576231173983e-162!GO:0043227;membrane-bound organelle;4.16534937372371e-162!GO:0005737;cytoplasm;1.16043710864268e-151!GO:0044422;organelle part;2.61505053323668e-126!GO:0044446;intracellular organelle part;8.35933382326344e-125!GO:0044444;cytoplasmic part;4.1661932519003e-113!GO:0044238;primary metabolic process;8.21765562214177e-76!GO:0043170;macromolecule metabolic process;3.6818636028293e-74!GO:0005515;protein binding;4.773733532258e-74!GO:0044237;cellular metabolic process;6.86147896447079e-72!GO:0032991;macromolecular complex;7.5411137664449e-71!GO:0044428;nuclear part;4.28414514615447e-62!GO:0005634;nucleus;5.66644366125928e-62!GO:0043233;organelle lumen;1.4916941633329e-58!GO:0031974;membrane-enclosed lumen;1.4916941633329e-58!GO:0003723;RNA binding;1.88800226461373e-54!GO:0030529;ribonucleoprotein complex;7.31033653443101e-53!GO:0016043;cellular component organization and biogenesis;5.23546993719219e-49!GO:0031090;organelle membrane;1.33597120164829e-47!GO:0019538;protein metabolic process;1.15279976677805e-44!GO:0043283;biopolymer metabolic process;8.62706884167465e-41!GO:0033036;macromolecule localization;5.15554566194525e-40!GO:0015031;protein transport;3.5529484861331e-39!GO:0006396;RNA processing;5.90636880214827e-39!GO:0044260;cellular macromolecule metabolic process;9.27711213483706e-39!GO:0043234;protein complex;4.39305801137856e-38!GO:0044267;cellular protein metabolic process;6.68831608990079e-38!GO:0031981;nuclear lumen;1.1960988695871e-37!GO:0008104;protein localization;1.64095506692965e-36!GO:0045184;establishment of protein localization;8.6113480595886e-36!GO:0046907;intracellular transport;9.89136535727704e-35!GO:0016071;mRNA metabolic process;1.43338269859021e-33!GO:0005739;mitochondrion;5.84471542993292e-33!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.85371540690044e-33!GO:0010467;gene expression;4.50088050896079e-31!GO:0006412;translation;1.13987172558694e-30!GO:0006996;organelle organization and biogenesis;1.76875726410049e-30!GO:0008380;RNA splicing;9.42321867692098e-29!GO:0006397;mRNA processing;1.16526179693797e-28!GO:0009058;biosynthetic process;3.96806038594086e-28!GO:0006886;intracellular protein transport;9.84261168353166e-28!GO:0009059;macromolecule biosynthetic process;1.30796532831866e-27!GO:0043228;non-membrane-bound organelle;1.65231137724848e-27!GO:0043232;intracellular non-membrane-bound organelle;1.65231137724848e-27!GO:0005840;ribosome;7.96178542571219e-27!GO:0031967;organelle envelope;9.96281545304352e-27!GO:0031975;envelope;1.48121832704199e-26!GO:0005783;endoplasmic reticulum;2.65237874178018e-26!GO:0005829;cytosol;3.59845576217937e-26!GO:0065003;macromolecular complex assembly;8.39442452552268e-26!GO:0012505;endomembrane system;9.50318979888887e-26!GO:0000166;nucleotide binding;3.94295491189322e-25!GO:0022607;cellular component assembly;1.30248880829186e-24!GO:0005654;nucleoplasm;4.7608639616672e-24!GO:0003735;structural constituent of ribosome;9.88017683157876e-24!GO:0044429;mitochondrial part;2.16280435321147e-23!GO:0044249;cellular biosynthetic process;3.7110527784053e-23!GO:0006259;DNA metabolic process;1.11460259291734e-22!GO:0051649;establishment of cellular localization;3.48533877432934e-22!GO:0044432;endoplasmic reticulum part;4.49579390174914e-22!GO:0051641;cellular localization;4.89306190771106e-22!GO:0033279;ribosomal subunit;3.57701859877515e-21!GO:0007049;cell cycle;1.44874041137173e-20!GO:0016462;pyrophosphatase activity;1.51685392824399e-20!GO:0005794;Golgi apparatus;2.17619045446329e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.26477159759051e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.91113793627932e-20!GO:0017111;nucleoside-triphosphatase activity;3.07531089455758e-20!GO:0048770;pigment granule;3.12706335299652e-20!GO:0042470;melanosome;3.12706335299652e-20!GO:0005681;spliceosome;5.18397457722362e-20!GO:0003676;nucleic acid binding;1.66570156641838e-19!GO:0044451;nucleoplasm part;2.12976188143362e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.11798497422583e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.54232054402518e-18!GO:0032553;ribonucleotide binding;1.12003636489977e-17!GO:0032555;purine ribonucleotide binding;1.12003636489977e-17!GO:0017076;purine nucleotide binding;1.4571341433889e-17!GO:0006457;protein folding;1.98230223012779e-17!GO:0005524;ATP binding;4.03524715180602e-17!GO:0016874;ligase activity;4.14877969368228e-17!GO:0032559;adenyl ribonucleotide binding;1.97689145463359e-16!GO:0022402;cell cycle process;2.16705698290285e-16!GO:0016070;RNA metabolic process;3.89968478942827e-16!GO:0030554;adenyl nucleotide binding;4.50571291572504e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.96333080464571e-15!GO:0048193;Golgi vesicle transport;2.51162528222646e-15!GO:0006119;oxidative phosphorylation;3.27285076906166e-15!GO:0005740;mitochondrial envelope;4.94459193293123e-15!GO:0005789;endoplasmic reticulum membrane;9.70509192283552e-15!GO:0016192;vesicle-mediated transport;1.33190003248619e-14!GO:0000278;mitotic cell cycle;1.38582638940865e-14!GO:0031966;mitochondrial membrane;2.01596145443797e-14!GO:0008134;transcription factor binding;2.1110840400607e-14!GO:0019866;organelle inner membrane;5.02576497414064e-14!GO:0043285;biopolymer catabolic process;6.8486453350136e-14!GO:0044445;cytosolic part;1.63667685123595e-13!GO:0005793;ER-Golgi intermediate compartment;1.92055834369028e-13!GO:0044265;cellular macromolecule catabolic process;4.11282992024443e-13!GO:0009057;macromolecule catabolic process;7.66731592419405e-13!GO:0005730;nucleolus;8.31413410906671e-13!GO:0016887;ATPase activity;8.65006615176982e-13!GO:0006605;protein targeting;1.07577639934539e-12!GO:0051082;unfolded protein binding;1.3655722993579e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.45681704269085e-12!GO:0006512;ubiquitin cycle;1.47311103254797e-12!GO:0005635;nuclear envelope;1.59011565360689e-12!GO:0030163;protein catabolic process;1.59799954907134e-12!GO:0006974;response to DNA damage stimulus;1.61314644329744e-12!GO:0031965;nuclear membrane;1.95345598633122e-12!GO:0042623;ATPase activity, coupled;1.96181706742107e-12!GO:0005743;mitochondrial inner membrane;2.12596003913735e-12!GO:0019941;modification-dependent protein catabolic process;2.97942145887067e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.97942145887067e-12!GO:0044257;cellular protein catabolic process;3.02081670754314e-12!GO:0006511;ubiquitin-dependent protein catabolic process;3.33330250392294e-12!GO:0000502;proteasome complex (sensu Eukaryota);3.54703217177373e-12!GO:0004386;helicase activity;4.9159212351562e-12!GO:0008135;translation factor activity, nucleic acid binding;5.57561856689285e-12!GO:0022618;protein-RNA complex assembly;9.62130388251761e-12!GO:0043412;biopolymer modification;1.40635546643358e-11!GO:0000087;M phase of mitotic cell cycle;1.55768226802987e-11!GO:0044455;mitochondrial membrane part;1.68904214219087e-11!GO:0007067;mitosis;2.04546397257826e-11!GO:0022403;cell cycle phase;2.30873033808296e-11!GO:0051276;chromosome organization and biogenesis;5.09641790528352e-11!GO:0015934;large ribosomal subunit;5.41506708690085e-11!GO:0044453;nuclear membrane part;5.57767378703389e-11!GO:0015935;small ribosomal subunit;7.41054601509182e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.55018931395593e-11!GO:0000375;RNA splicing, via transesterification reactions;8.55018931395593e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.55018931395593e-11!GO:0051186;cofactor metabolic process;9.01070889740902e-11!GO:0016604;nuclear body;1.28590243364518e-10!GO:0031980;mitochondrial lumen;1.41608564095977e-10!GO:0005759;mitochondrial matrix;1.41608564095977e-10!GO:0005694;chromosome;1.46726804465217e-10!GO:0008026;ATP-dependent helicase activity;2.57245112848627e-10!GO:0005788;endoplasmic reticulum lumen;2.57547344059835e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.59406740595092e-10!GO:0006464;protein modification process;3.03435936064176e-10!GO:0044248;cellular catabolic process;3.29880703917907e-10!GO:0005746;mitochondrial respiratory chain;3.37408745030202e-10!GO:0006281;DNA repair;3.69201952956079e-10!GO:0015630;microtubule cytoskeleton;3.84195483779032e-10!GO:0051301;cell division;4.86042992813435e-10!GO:0006913;nucleocytoplasmic transport;5.4219041399731e-10!GO:0003712;transcription cofactor activity;6.15666311071581e-10!GO:0044431;Golgi apparatus part;8.89641671403463e-10!GO:0051169;nuclear transport;1.01361129937399e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.23624978645207e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.23624978645207e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.23624978645207e-09!GO:0006461;protein complex assembly;1.71795977968616e-09!GO:0016607;nuclear speck;1.71795977968616e-09!GO:0003743;translation initiation factor activity;1.72752206221072e-09!GO:0043038;amino acid activation;2.07620180663349e-09!GO:0006418;tRNA aminoacylation for protein translation;2.07620180663349e-09!GO:0043039;tRNA aminoacylation;2.07620180663349e-09!GO:0000279;M phase;2.16496792757479e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.27459719882119e-09!GO:0009719;response to endogenous stimulus;3.08330044847079e-09!GO:0050136;NADH dehydrogenase (quinone) activity;3.31395489797252e-09!GO:0003954;NADH dehydrogenase activity;3.31395489797252e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.31395489797252e-09!GO:0048523;negative regulation of cellular process;3.76798194657284e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;4.21316556348692e-09!GO:0008565;protein transporter activity;4.29947563404527e-09!GO:0006399;tRNA metabolic process;4.67060296453487e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.66851497053081e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.05978618088063e-08!GO:0006323;DNA packaging;1.18158285681956e-08!GO:0044427;chromosomal part;1.2202707884482e-08!GO:0006732;coenzyme metabolic process;1.37234879481273e-08!GO:0000074;regulation of progression through cell cycle;1.79741638839775e-08!GO:0051726;regulation of cell cycle;1.80074491542251e-08!GO:0005643;nuclear pore;2.63939961631406e-08!GO:0050794;regulation of cellular process;2.99948181262133e-08!GO:0043687;post-translational protein modification;3.69487380491307e-08!GO:0009259;ribonucleotide metabolic process;3.93368040245427e-08!GO:0006260;DNA replication;3.97422470854878e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.29536217014868e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.51420801187816e-08!GO:0030964;NADH dehydrogenase complex (quinone);6.80120842558321e-08!GO:0045271;respiratory chain complex I;6.80120842558321e-08!GO:0005747;mitochondrial respiratory chain complex I;6.80120842558321e-08!GO:0019787;small conjugating protein ligase activity;7.09823062248871e-08!GO:0042775;organelle ATP synthesis coupled electron transport;7.16998987629374e-08!GO:0042773;ATP synthesis coupled electron transport;7.16998987629374e-08!GO:0000139;Golgi membrane;7.51861686488599e-08!GO:0042254;ribosome biogenesis and assembly;1.02013796219165e-07!GO:0008639;small protein conjugating enzyme activity;1.1260119516206e-07!GO:0048519;negative regulation of biological process;1.19804995311978e-07!GO:0006403;RNA localization;1.20956891406613e-07!GO:0004842;ubiquitin-protein ligase activity;1.36952156828077e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.39486580028444e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.46326180233356e-07!GO:0005768;endosome;1.49162852686088e-07!GO:0009150;purine ribonucleotide metabolic process;1.49162852686088e-07!GO:0050657;nucleic acid transport;1.49323923725432e-07!GO:0051236;establishment of RNA localization;1.49323923725432e-07!GO:0050658;RNA transport;1.49323923725432e-07!GO:0030120;vesicle coat;1.58916905484062e-07!GO:0030662;coated vesicle membrane;1.58916905484062e-07!GO:0016787;hydrolase activity;1.5990673801988e-07!GO:0006163;purine nucleotide metabolic process;1.69626961107529e-07!GO:0005773;vacuole;1.86338421411833e-07!GO:0048475;coated membrane;1.88163080829376e-07!GO:0030117;membrane coat;1.88163080829376e-07!GO:0006446;regulation of translational initiation;1.98797028067324e-07!GO:0007010;cytoskeleton organization and biogenesis;2.54317671996552e-07!GO:0006413;translational initiation;2.56730726659715e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.72385723793385e-07!GO:0012501;programmed cell death;3.39643324532987e-07!GO:0009260;ribonucleotide biosynthetic process;3.51929341219809e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.60127920619063e-07!GO:0006366;transcription from RNA polymerase II promoter;4.83456071396929e-07!GO:0046930;pore complex;5.02368109061052e-07!GO:0009055;electron carrier activity;5.0324661906096e-07!GO:0006164;purine nucleotide biosynthetic process;5.46194573275787e-07!GO:0006915;apoptosis;5.65175949621323e-07!GO:0016568;chromatin modification;6.50476351896463e-07!GO:0017038;protein import;7.08402255563277e-07!GO:0009060;aerobic respiration;7.11254566246652e-07!GO:0015986;ATP synthesis coupled proton transport;8.55766255137687e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.55766255137687e-07!GO:0008219;cell death;8.89320874692502e-07!GO:0016265;death;8.89320874692502e-07!GO:0009199;ribonucleoside triphosphate metabolic process;9.02190626927636e-07!GO:0016881;acid-amino acid ligase activity;9.20873672201279e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.06397059895703e-06!GO:0009056;catabolic process;1.15573124377258e-06!GO:0009141;nucleoside triphosphate metabolic process;1.25443808930861e-06!GO:0065002;intracellular protein transport across a membrane;1.57442899272738e-06!GO:0000323;lytic vacuole;1.57442899272738e-06!GO:0005764;lysosome;1.57442899272738e-06!GO:0043566;structure-specific DNA binding;1.63790299275702e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.66287901402355e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.66287901402355e-06!GO:0045333;cellular respiration;1.70127966277026e-06!GO:0031988;membrane-bound vesicle;1.75764265768742e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.03510192238328e-06!GO:0046034;ATP metabolic process;2.07356200438251e-06!GO:0003724;RNA helicase activity;2.08404198395974e-06!GO:0031324;negative regulation of cellular metabolic process;2.09138157594892e-06!GO:0016564;transcription repressor activity;2.56544962325567e-06!GO:0006099;tricarboxylic acid cycle;2.64321161116552e-06!GO:0046356;acetyl-CoA catabolic process;2.64321161116552e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.87114753996172e-06!GO:0008654;phospholipid biosynthetic process;2.92083446530022e-06!GO:0051028;mRNA transport;3.23880743698133e-06!GO:0051187;cofactor catabolic process;3.84067595436758e-06!GO:0005761;mitochondrial ribosome;3.92784160779054e-06!GO:0000313;organellar ribosome;3.92784160779054e-06!GO:0005819;spindle;3.92784160779054e-06!GO:0009109;coenzyme catabolic process;4.20365714020294e-06!GO:0005798;Golgi-associated vesicle;4.51700975023562e-06!GO:0005667;transcription factor complex;4.60203057153717e-06!GO:0005813;centrosome;4.9246383199715e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.00473416613111e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.00473416613111e-06!GO:0019829;cation-transporting ATPase activity;5.20230008630403e-06!GO:0003714;transcription corepressor activity;5.35511720423957e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.45444751249699e-06!GO:0003697;single-stranded DNA binding;6.08380500968033e-06!GO:0005815;microtubule organizing center;6.48331160203121e-06!GO:0006084;acetyl-CoA metabolic process;7.12859825550337e-06!GO:0051789;response to protein stimulus;7.32392653681246e-06!GO:0006986;response to unfolded protein;7.32392653681246e-06!GO:0006606;protein import into nucleus;8.09792846182577e-06!GO:0065004;protein-DNA complex assembly;8.56987296494788e-06!GO:0051170;nuclear import;8.75270060585312e-06!GO:0009892;negative regulation of metabolic process;8.77704612316592e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.21149812488462e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.21149812488462e-06!GO:0006754;ATP biosynthetic process;1.00848055839134e-05!GO:0006753;nucleoside phosphate metabolic process;1.00848055839134e-05!GO:0050789;regulation of biological process;1.01767428468101e-05!GO:0006333;chromatin assembly or disassembly;1.07009597763556e-05!GO:0044440;endosomal part;1.1581279958819e-05!GO:0010008;endosome membrane;1.1581279958819e-05!GO:0031982;vesicle;1.2963503161702e-05!GO:0051246;regulation of protein metabolic process;1.43755191803708e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.50828434308403e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.50975843597409e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.50975843597409e-05!GO:0031410;cytoplasmic vesicle;1.5850814304724e-05!GO:0008361;regulation of cell size;1.58707357246664e-05!GO:0003924;GTPase activity;1.63260278093911e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.69173073792349e-05!GO:0030029;actin filament-based process;1.69173073792349e-05!GO:0016049;cell growth;1.74935180635229e-05!GO:0030133;transport vesicle;1.84821803600274e-05!GO:0016740;transferase activity;1.97717552282441e-05!GO:0009117;nucleotide metabolic process;2.00315212648522e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.05761020218836e-05!GO:0043623;cellular protein complex assembly;2.27095997363553e-05!GO:0006613;cotranslational protein targeting to membrane;2.33058173076336e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.42913726134189e-05!GO:0031252;leading edge;2.9677756431098e-05!GO:0008092;cytoskeletal protein binding;3.04601439677868e-05!GO:0051188;cofactor biosynthetic process;3.54398145703999e-05!GO:0030867;rough endoplasmic reticulum membrane;3.64344892903524e-05!GO:0000785;chromatin;3.82291216833239e-05!GO:0045786;negative regulation of progression through cell cycle;3.93938865302469e-05!GO:0007051;spindle organization and biogenesis;4.08425731499604e-05!GO:0005770;late endosome;4.57084787910764e-05!GO:0005874;microtubule;4.78818618592111e-05!GO:0016363;nuclear matrix;4.82614016075678e-05!GO:0019899;enzyme binding;5.15744389547961e-05!GO:0000151;ubiquitin ligase complex;5.65255203890135e-05!GO:0006752;group transfer coenzyme metabolic process;5.9370412466201e-05!GO:0005905;coated pit;7.38027205480845e-05!GO:0006793;phosphorus metabolic process;7.69858925587677e-05!GO:0006796;phosphate metabolic process;7.69858925587677e-05!GO:0006916;anti-apoptosis;8.11463839028418e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.26967708207919e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.52462443682887e-05!GO:0032446;protein modification by small protein conjugation;8.59909689278111e-05!GO:0019222;regulation of metabolic process;8.76607193927338e-05!GO:0016481;negative regulation of transcription;9.24078916355511e-05!GO:0016310;phosphorylation;9.40208851960817e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.73849308749388e-05!GO:0000245;spliceosome assembly;9.77701764880868e-05!GO:0045259;proton-transporting ATP synthase complex;0.000103851270402417!GO:0030532;small nuclear ribonucleoprotein complex;0.000107613031471637!GO:0043069;negative regulation of programmed cell death;0.000107758005491317!GO:0016563;transcription activator activity;0.000127825246129962!GO:0005769;early endosome;0.000134213022474048!GO:0016567;protein ubiquitination;0.000145693940631919!GO:0043067;regulation of programmed cell death;0.000145693940631919!GO:0044262;cellular carbohydrate metabolic process;0.000146439502609391!GO:0042981;regulation of apoptosis;0.000158113747156279!GO:0004576;oligosaccharyl transferase activity;0.000162702228437395!GO:0016853;isomerase activity;0.000164682939237645!GO:0006364;rRNA processing;0.000169050570885714!GO:0016859;cis-trans isomerase activity;0.000170818718601039!GO:0008186;RNA-dependent ATPase activity;0.000183851527493415!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000189426629082101!GO:0003713;transcription coactivator activity;0.00019326530951866!GO:0043066;negative regulation of apoptosis;0.000204435180509505!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000215874232091141!GO:0008250;oligosaccharyl transferase complex;0.000235528337625773!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000260707360465933!GO:0005839;proteasome core complex (sensu Eukaryota);0.000264681746872732!GO:0016072;rRNA metabolic process;0.000287783622921584!GO:0016491;oxidoreductase activity;0.000295363555283476!GO:0001558;regulation of cell growth;0.000312200882434908!GO:0015980;energy derivation by oxidation of organic compounds;0.000330533708972474!GO:0046489;phosphoinositide biosynthetic process;0.000340419140383057!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000347479881953776!GO:0005791;rough endoplasmic reticulum;0.000357551619068345!GO:0030663;COPI coated vesicle membrane;0.000360410209799939!GO:0030126;COPI vesicle coat;0.000360410209799939!GO:0046474;glycerophospholipid biosynthetic process;0.000368081091685415!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000381664827019529!GO:0051329;interphase of mitotic cell cycle;0.00039052990448402!GO:0009108;coenzyme biosynthetic process;0.000402397695705149!GO:0006891;intra-Golgi vesicle-mediated transport;0.000420480649375294!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000459786413977909!GO:0003690;double-stranded DNA binding;0.000460453370347335!GO:0030134;ER to Golgi transport vesicle;0.000485422420160377!GO:0051325;interphase;0.000497073754146484!GO:0051427;hormone receptor binding;0.000538173581432682!GO:0004004;ATP-dependent RNA helicase activity;0.000557591376521317!GO:0003729;mRNA binding;0.000673579973753708!GO:0006612;protein targeting to membrane;0.000688252407772699!GO:0045454;cell redox homeostasis;0.000709450296984513!GO:0051168;nuclear export;0.000711182800884318!GO:0005048;signal sequence binding;0.000730356889745306!GO:0018196;peptidyl-asparagine modification;0.000730356889745306!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000730356889745306!GO:0019843;rRNA binding;0.000783547860668148!GO:0004298;threonine endopeptidase activity;0.000818121564362101!GO:0006334;nucleosome assembly;0.000859237361399229!GO:0031968;organelle outer membrane;0.000942065332364956!GO:0044420;extracellular matrix part;0.000991472714426342!GO:0031497;chromatin assembly;0.000992700770841885!GO:0035257;nuclear hormone receptor binding;0.00100036243241842!GO:0031124;mRNA 3'-end processing;0.00112176491369306!GO:0006261;DNA-dependent DNA replication;0.00112176491369306!GO:0005885;Arp2/3 protein complex;0.00112176491369306!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00117220964789658!GO:0007243;protein kinase cascade;0.00119498101134506!GO:0046467;membrane lipid biosynthetic process;0.00120417319077662!GO:0019867;outer membrane;0.00121171278184546!GO:0048471;perinuclear region of cytoplasm;0.00121739712269634!GO:0030127;COPII vesicle coat;0.00122210689132631!GO:0012507;ER to Golgi transport vesicle membrane;0.00122210689132631!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00122744197031896!GO:0015399;primary active transmembrane transporter activity;0.00122744197031896!GO:0030137;COPI-coated vesicle;0.00123470413035461!GO:0043021;ribonucleoprotein binding;0.0012518574952726!GO:0043284;biopolymer biosynthetic process;0.00126126201098379!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00134599389789254!GO:0000075;cell cycle checkpoint;0.00138160695484146!GO:0000059;protein import into nucleus, docking;0.00142317357692394!GO:0065007;biological regulation;0.00154030437400531!GO:0006414;translational elongation;0.00160777421257581!GO:0007052;mitotic spindle organization and biogenesis;0.00173163014122425!GO:0008094;DNA-dependent ATPase activity;0.00173752757051548!GO:0000775;chromosome, pericentric region;0.00175178848848705!GO:0051920;peroxiredoxin activity;0.00193550020981112!GO:0016197;endosome transport;0.00222696087027514!GO:0003682;chromatin binding;0.00222696087027514!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00234765959056396!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00234765959056396!GO:0051252;regulation of RNA metabolic process;0.00245751484692652!GO:0030176;integral to endoplasmic reticulum membrane;0.00260020583298488!GO:0006310;DNA recombination;0.00266639923048292!GO:0003678;DNA helicase activity;0.00270580268834484!GO:0048522;positive regulation of cellular process;0.00295070599947927!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.003127126853008!GO:0007040;lysosome organization and biogenesis;0.00321895205555065!GO:0000776;kinetochore;0.00328776925534425!GO:0003684;damaged DNA binding;0.00341566887314827!GO:0008022;protein C-terminus binding;0.00344142552228466!GO:0006302;double-strand break repair;0.00345285068459615!GO:0004177;aminopeptidase activity;0.00345285068459615!GO:0006402;mRNA catabolic process;0.00353923723319343!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00367970537855029!GO:0005525;GTP binding;0.00373930074636824!GO:0008047;enzyme activator activity;0.00374775390763685!GO:0007050;cell cycle arrest;0.00387534630196794!GO:0030658;transport vesicle membrane;0.00406946511661364!GO:0007033;vacuole organization and biogenesis;0.00415279890220703!GO:0006650;glycerophospholipid metabolic process;0.00416468463585391!GO:0009165;nucleotide biosynthetic process;0.00432418341216572!GO:0008610;lipid biosynthetic process;0.00436166571789547!GO:0019798;procollagen-proline dioxygenase activity;0.00459031199263506!GO:0016779;nucleotidyltransferase activity;0.00464226549819628!GO:0031123;RNA 3'-end processing;0.00490925876790554!GO:0015631;tubulin binding;0.00491243375330853!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00491243375330853!GO:0006505;GPI anchor metabolic process;0.00508847799288194!GO:0030521;androgen receptor signaling pathway;0.00513377564687859!GO:0006506;GPI anchor biosynthetic process;0.00518208117708856!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0052179157058111!GO:0005581;collagen;0.00524109137837135!GO:0004674;protein serine/threonine kinase activity;0.00548757282787889!GO:0045045;secretory pathway;0.00549360825007271!GO:0006091;generation of precursor metabolites and energy;0.00570009233283715!GO:0030118;clathrin coat;0.00571244341943197!GO:0065009;regulation of a molecular function;0.00573137073042502!GO:0043492;ATPase activity, coupled to movement of substances;0.0057844668652614!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00604341186341654!GO:0031543;peptidyl-proline dioxygenase activity;0.0061442317403585!GO:0005741;mitochondrial outer membrane;0.00623771942481975!GO:0031323;regulation of cellular metabolic process;0.00625762753321534!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00641127254408593!GO:0005856;cytoskeleton;0.00642315191680085!GO:0048500;signal recognition particle;0.00656573262592217!GO:0006509;membrane protein ectodomain proteolysis;0.00683088744318349!GO:0033619;membrane protein proteolysis;0.00683088744318349!GO:0003779;actin binding;0.00683945737454233!GO:0008484;sulfuric ester hydrolase activity;0.00687935001503655!GO:0017166;vinculin binding;0.00692701902455689!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00708953188938435!GO:0007093;mitotic cell cycle checkpoint;0.00714041731800854!GO:0003756;protein disulfide isomerase activity;0.00804332269691528!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00804332269691528!GO:0006892;post-Golgi vesicle-mediated transport;0.00839229242433953!GO:0051052;regulation of DNA metabolic process;0.00853788629994835!GO:0030384;phosphoinositide metabolic process;0.00856810178082303!GO:0031418;L-ascorbic acid binding;0.00861321444417001!GO:0000922;spindle pole;0.00877286257537845!GO:0008154;actin polymerization and/or depolymerization;0.00892056118139557!GO:0007005;mitochondrion organization and biogenesis;0.00898792666904083!GO:0006497;protein amino acid lipidation;0.00930890156102934!GO:0001527;microfibril;0.00938191434945207!GO:0001726;ruffle;0.00943602758908552!GO:0030132;clathrin coat of coated pit;0.00943602758908552!GO:0003711;transcription elongation regulator activity;0.00957694577013976!GO:0031901;early endosome membrane;0.00965848596097894!GO:0006378;mRNA polyadenylation;0.00971040330500269!GO:0005637;nuclear inner membrane;0.0100177275552696!GO:0032561;guanyl ribonucleotide binding;0.0103093554493036!GO:0019001;guanyl nucleotide binding;0.0103093554493036!GO:0007160;cell-matrix adhesion;0.0103734667338316!GO:0006289;nucleotide-excision repair;0.0107601783126422!GO:0051128;regulation of cellular component organization and biogenesis;0.0109554747070998!GO:0030660;Golgi-associated vesicle membrane;0.0109706268219693!GO:0007017;microtubule-based process;0.0112723268056729!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0115039992374955!GO:0033043;regulation of organelle organization and biogenesis;0.0115039992374955!GO:0040008;regulation of growth;0.0115051088644982!GO:0003923;GPI-anchor transamidase activity;0.0115480266293091!GO:0016255;attachment of GPI anchor to protein;0.0115480266293091!GO:0042765;GPI-anchor transamidase complex;0.0115480266293091!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0116594749639672!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0116594749639672!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0116594749639672!GO:0016281;eukaryotic translation initiation factor 4F complex;0.011860002006299!GO:0005657;replication fork;0.0129265189513287!GO:0031589;cell-substrate adhesion;0.0129265189513287!GO:0035258;steroid hormone receptor binding;0.0129884220040736!GO:0000082;G1/S transition of mitotic cell cycle;0.0133223679429803!GO:0008139;nuclear localization sequence binding;0.013356161681818!GO:0003746;translation elongation factor activity;0.0133789884482674!GO:0005938;cell cortex;0.013588150189194!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0135981886883904!GO:0045892;negative regulation of transcription, DNA-dependent;0.0138385440905086!GO:0032200;telomere organization and biogenesis;0.0138714390510305!GO:0000723;telomere maintenance;0.0138714390510305!GO:0005762;mitochondrial large ribosomal subunit;0.0139103479910174!GO:0000315;organellar large ribosomal subunit;0.0139103479910174!GO:0005869;dynactin complex;0.0139103479910174!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0139168007546903!GO:0045047;protein targeting to ER;0.0139168007546903!GO:0016126;sterol biosynthetic process;0.0140067238697727!GO:0005591;collagen type VIII;0.0143858287277843!GO:0005598;short-chain collagen;0.0143858287277843!GO:0030027;lamellipodium;0.0143858287277843!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0144676130757567!GO:0007041;lysosomal transport;0.0145772427861029!GO:0031072;heat shock protein binding;0.0146069125367336!GO:0016044;membrane organization and biogenesis;0.0149301734307893!GO:0042802;identical protein binding;0.0149879439512011!GO:0005862;muscle thin filament tropomyosin;0.0150089526496965!GO:0007034;vacuolar transport;0.0156570089085583!GO:0030032;lamellipodium biogenesis;0.0159985023766804!GO:0051539;4 iron, 4 sulfur cluster binding;0.0162537843676279!GO:0006897;endocytosis;0.0165176552004591!GO:0010324;membrane invagination;0.0165176552004591!GO:0005583;fibrillar collagen;0.0165894190550445!GO:0006984;ER-nuclear signaling pathway;0.0171336504037198!GO:0005876;spindle microtubule;0.0173807867403676!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0175980161482213!GO:0046519;sphingoid metabolic process;0.0178149100028417!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0179122406079331!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0179122406079331!GO:0031625;ubiquitin protein ligase binding;0.0179468042110517!GO:0030518;steroid hormone receptor signaling pathway;0.0181492156943785!GO:0005774;vacuolar membrane;0.018466996666296!GO:0001666;response to hypoxia;0.0187394231874504!GO:0000049;tRNA binding;0.0189122809623347!GO:0006383;transcription from RNA polymerase III promoter;0.0191022135457404!GO:0006350;transcription;0.0191888551206889!GO:0051271;negative regulation of cell motility;0.0195537274143442!GO:0006352;transcription initiation;0.0195925310925163!GO:0031529;ruffle organization and biogenesis;0.0196933672202851!GO:0043488;regulation of mRNA stability;0.020020338248627!GO:0043487;regulation of RNA stability;0.020020338248627!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0200348842876341!GO:0045893;positive regulation of transcription, DNA-dependent;0.0201161361436477!GO:0048487;beta-tubulin binding;0.0204236548587209!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0204687442480858!GO:0004003;ATP-dependent DNA helicase activity;0.0205569874769737!GO:0005832;chaperonin-containing T-complex;0.0205933198866742!GO:0006607;NLS-bearing substrate import into nucleus;0.0207729002323722!GO:0006643;membrane lipid metabolic process;0.0208857804044568!GO:0000781;chromosome, telomeric region;0.0219753484754622!GO:0050662;coenzyme binding;0.0219753484754622!GO:0007030;Golgi organization and biogenesis;0.0219753484754622!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0221797927738812!GO:0008312;7S RNA binding;0.0223955263808625!GO:0000118;histone deacetylase complex;0.0231123851286857!GO:0042158;lipoprotein biosynthetic process;0.0237977005317936!GO:0045792;negative regulation of cell size;0.0239387660219675!GO:0050681;androgen receptor binding;0.0241687179617361!GO:0007088;regulation of mitosis;0.0243018968765205!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0248360647101883!GO:0006401;RNA catabolic process;0.0248983545343356!GO:0000339;RNA cap binding;0.0250624671002596!GO:0031902;late endosome membrane;0.0251761197908751!GO:0030308;negative regulation of cell growth;0.0254184058358604!GO:0006672;ceramide metabolic process;0.0254184058358604!GO:0033559;unsaturated fatty acid metabolic process;0.0255186540889981!GO:0006636;unsaturated fatty acid biosynthetic process;0.0255186540889981!GO:0051287;NAD binding;0.0256130913064381!GO:0009967;positive regulation of signal transduction;0.0260717099249043!GO:0006405;RNA export from nucleus;0.0262141957608747!GO:0004527;exonuclease activity;0.0267626647220194!GO:0022408;negative regulation of cell-cell adhesion;0.0268298057758644!GO:0000030;mannosyltransferase activity;0.0268552068397623!GO:0045941;positive regulation of transcription;0.0269892934858049!GO:0030149;sphingolipid catabolic process;0.0272600895097228!GO:0030041;actin filament polymerization;0.0276050284885118!GO:0005684;U2-dependent spliceosome;0.0280944733739644!GO:0019752;carboxylic acid metabolic process;0.0284364678549794!GO:0006818;hydrogen transport;0.028676787644364!GO:0044452;nucleolar part;0.0289023011465725!GO:0005875;microtubule associated complex;0.0293193480558109!GO:0006007;glucose catabolic process;0.0293193480558109!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0293193480558109!GO:0000910;cytokinesis;0.0293863391153182!GO:0015992;proton transport;0.0294461106085569!GO:0006354;RNA elongation;0.0304547317503973!GO:0046483;heterocycle metabolic process;0.0305324875570076!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0306994945020407!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0306994945020407!GO:0006376;mRNA splice site selection;0.0308653674667777!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0308653674667777!GO:0005975;carbohydrate metabolic process;0.0309225173529313!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0313577020641075!GO:0050790;regulation of catalytic activity;0.0315601845657318!GO:0001952;regulation of cell-matrix adhesion;0.0316461087595532!GO:0004563;beta-N-acetylhexosaminidase activity;0.0326226293358868!GO:0016584;nucleosome positioning;0.0326226293358868!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0326226293358868!GO:0008033;tRNA processing;0.0329685748224729!GO:0006082;organic acid metabolic process;0.0332241199118224!GO:0022890;inorganic cation transmembrane transporter activity;0.0335877981935464!GO:0005595;collagen type XII;0.0337909430248329!GO:0032940;secretion by cell;0.0337980807515193!GO:0000209;protein polyubiquitination;0.0337980807515193!GO:0007059;chromosome segregation;0.0337980807515193!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0340296087138131!GO:0043022;ribosome binding;0.0340808833249925!GO:0005096;GTPase activator activity;0.0343774738151261!GO:0048468;cell development;0.0346277543154511!GO:0016251;general RNA polymerase II transcription factor activity;0.0349222614724336!GO:0005784;translocon complex;0.0351465505749884!GO:0035035;histone acetyltransferase binding;0.0365699184397074!GO:0016408;C-acyltransferase activity;0.0365699184397074!GO:0006595;polyamine metabolic process;0.0366938695455213!GO:0030119;AP-type membrane coat adaptor complex;0.0387089154575145!GO:0008180;signalosome;0.0387104374574483!GO:0032508;DNA duplex unwinding;0.0387824089201936!GO:0032392;DNA geometric change;0.0387824089201936!GO:0044437;vacuolar part;0.0388716128968292!GO:0032535;regulation of cellular component size;0.0403448598111937!GO:0031301;integral to organelle membrane;0.0404118133400098!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0404118133400098!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0404118133400098!GO:0030833;regulation of actin filament polymerization;0.0413813863835347!GO:0006740;NADPH regeneration;0.042456544986189!GO:0006098;pentose-phosphate shunt;0.042456544986189!GO:0016579;protein deubiquitination;0.04276648264591!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0441847327084376!GO:0040013;negative regulation of locomotion;0.0448279713659329!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0448279713659329!GO:0030659;cytoplasmic vesicle membrane;0.045083964459228!GO:0043631;RNA polyadenylation;0.0452900221561855!GO:0006379;mRNA cleavage;0.0453591095872903!GO:0051348;negative regulation of transferase activity;0.0454548746759411!GO:0045639;positive regulation of myeloid cell differentiation;0.0456356005157247!GO:0006338;chromatin remodeling;0.0456356005157247!GO:0006644;phospholipid metabolic process;0.0457353369495334!GO:0031461;cullin-RING ubiquitin ligase complex;0.0459636565730621!GO:0030131;clathrin adaptor complex;0.0467148324363981!GO:0009225;nucleotide-sugar metabolic process;0.0467784806322095!GO:0033673;negative regulation of kinase activity;0.047973631235417!GO:0006469;negative regulation of protein kinase activity;0.047973631235417!GO:0016301;kinase activity;0.0497902249465538
 |sample_id=14305
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=skin
 |top_motifs=ALX4:2.20465791481;XBP1:2.19048019873;NKX3-1:2.19031216361;HIF1A:2.04231703583;EN1,2:1.92218390016;HOX{A5,B5}:1.84206932302;HBP1_HMGB_SSRP1_UBTF:1.6789065526;MYBL2:1.66785586818;KLF4:1.61903298806;SRF:1.61104714829;HSF1,2:1.60837138589;FOXL1:1.57370600676;TEAD1:1.56012979006;UFEwm:1.55419287142;TAL1_TCF{3,4,12}:1.52589102221;NR3C1:1.52323897571;PRDM1:1.49881895694;NFE2L1:1.48341945053;GZF1:1.48034519451;ZNF384:1.46689196964;MAFB:1.40532369485;MZF1:1.40092234166;RXR{A,B,G}:1.37171652651;ESR1:1.34231411762;RXRA_VDR{dimer}:1.32393684966;HMX1:1.31886258015;GFI1B:1.28068745809;GATA4:1.26470681663;NKX3-2:1.24647168892;GCM1,2:1.23898788398;SOX17:1.23281553799;TP53:1.19839400872;ZNF238:1.17953699265;EBF1:1.16919818741;EVI1:1.14904720538;GTF2A1,2:1.14269721358;AHR_ARNT_ARNT2:1.13828642967;EP300:1.13798445766;GFI1:1.08698180559;MTE{core}:1.06700192237;MAZ:1.05855417033;TEF:1.04463709251;HMGA1,2:1.02291492571;ATF6:1.00134898377;GTF2I:0.942301373131;ZIC1..3:0.913501039265;TOPORS:0.899579364986;NANOG{mouse}:0.893728431587;ZBTB6:0.855330691056;RFX1:0.854556110446;SMAD1..7,9:0.814347699416;TFAP2{A,C}:0.776309851601;BPTF:0.745544464999;TLX1..3_NFIC{dimer}:0.741398186883;TFAP4:0.739032176264;TFDP1:0.691273810633;SPZ1:0.65904248053;FOXD3:0.611822961573;NKX2-2,8:0.592161708188;NFATC1..3:0.575384587717;ARID5B:0.555013510991;FOXN1:0.532356673984;TFCP2:0.522136675028;TBX4,5:0.500919196829;NFE2L2:0.480089866394;HOX{A4,D4}:0.471354446638;GLI1..3:0.44607305637;AIRE:0.44422619497;BACH2:0.43885432151;PPARG:0.433414790218;MYB:0.424711615934;HLF:0.407367398473;MEF2{A,B,C,D}:0.373275930571;CREB1:0.353130565608;POU5F1:0.34742360415;IKZF1:0.328878286647;MED-1{core}:0.320167170539;HOXA9_MEIS1:0.299369072765;NFE2:0.281967556225;SOX2:0.28066713344;PATZ1:0.277526185669;NKX2-1,4:0.275935754983;PAX8:0.260806781303;CDC5L:0.236892442943;XCPE1{core}:0.233244434568;NRF1:0.225348174601;RREB1:0.213598800695;FOS_FOS{B,L1}_JUN{B,D}:0.209581999777;POU3F1..4:0.198805641769;PAX3,7:0.16408433639;ELK1,4_GABP{A,B1}:0.16356125594;E2F1..5:0.158022839553;MYFfamily:0.138339703084;LHX3,4:0.134494483447;PDX1:0.133163612187;PAX5:0.129451268152;PAX2:0.126317380533;FOX{D1,D2}:0.102880811732;TBP:0.0874868628475;ATF4:0.0766211022376;TLX2:0.0721319707126;ATF5_CREB3:0.0669060380484;HES1:0.0589890917196;NFIX:0.0505029822702;TFAP2B:0.0397508279629;ZNF143:0.029702249351;CRX:0.0278792388116;LEF1_TCF7_TCF7L1,2:0.0183710701378;RUNX1..3:0.017318723986;STAT1,3:0.0134127730607;HIC1:0.00554410305103;NFY{A,B,C}:0.00498376349141;SP1:0.00412814029585;ZFP161:-0.003101379428;T:-0.00716093046263;FOSL2:-0.0146456124928;DMAP1_NCOR{1,2}_SMARC:-0.0344366221896;PRRX1,2:-0.0634743793;SOX5:-0.0889876991522;POU1F1:-0.104676472594;YY1:-0.112653441596;NHLH1,2:-0.115196015486;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.15421617413;DBP:-0.16827741709;JUN:-0.193010535776;ZBTB16:-0.200077814274;FOXA2:-0.208192908543;ZNF148:-0.214485371358;NR1H4:-0.22283064358;CEBPA,B_DDIT3:-0.226940319007;ELF1,2,4:-0.233987523172;HAND1,2:-0.242248812565;IRF1,2:-0.255927828217;FOX{I1,J2}:-0.25603686206;FOXP1:-0.258975669314;RFX2..5_RFXANK_RFXAP:-0.290515958911;STAT2,4,6:-0.318562532986;HNF1A:-0.337209091486;CUX2:-0.337954700092;EGR1..3:-0.3698622669;NKX2-3_NKX2-5:-0.421585043234;SPI1:-0.423580101539;PAX1,9:-0.426735398615;SPIB:-0.430115085008;ONECUT1,2:-0.44228056684;SREBF1,2:-0.454217737834;HNF4A_NR2F1,2:-0.466672952069;ZNF423:-0.47612053366;bHLH_family:-0.491613371379;ETS1,2:-0.493676314206;TGIF1:-0.498009370864;POU6F1:-0.506429148647;HOX{A6,A7,B6,B7}:-0.524101445898;NFKB1_REL_RELA:-0.58937356109;AR:-0.600322082452;PAX4:-0.618889171571;SOX{8,9,10}:-0.620820256779;PBX1:-0.646877792345;FOXP3:-0.673451626032;NR6A1:-0.690871725264;REST:-0.757476333984;ADNP_IRX_SIX_ZHX:-0.765543456407;ATF2:-0.773815606943;FOXO1,3,4:-0.783464499788;VSX1,2:-0.785186363105;IKZF2:-0.907422975706;NANOG:-0.925069811282;POU2F1..3:-0.946511066387;STAT5{A,B}:-0.958489477047;MTF1:-0.961091321651;RBPJ:-0.963365255294;OCT4_SOX2{dimer}:-1.00737037552;NKX6-1,2:-1.01465845574;ALX1:-1.02817387984;NFIL3:-1.02825142244;IRF7:-1.02872465173;SNAI1..3:-1.10961808388;PITX1..3:-1.1096937091;BREu{core}:-1.11788146157;CDX1,2,4:-1.14965879889;GATA6:-1.21281755528;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.21496788738;ZEB1:-1.26276915339;FOXM1:-1.30081479347;LMO2:-1.38484735233;MYOD1:-1.42474164951;NR5A1,2:-1.47203245644;RORA:-1.55382613981;PAX6:-1.58087559376;FOX{F1,F2,J1}:-1.7414480631;ESRRA:-1.77500998305;FOXQ1:-1.89568473862
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14305-155C3;search_select_hide=table117:FF:14305-155C3
 }}

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FF:14305-155C3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:06, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0