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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000467,UBERON:0001062,UBERON:0003102,UBERON:0002416
|DRA_sample_Accession=CAGE@SAMD00005302
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002620
|accession_numbers=CAGE;DRX008037;DRR008909;DRZ000334;DRZ001719;DRZ011684;DRZ013069
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000406,FF:0000668
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.46!286.75!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.06!113.10!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.92!82.96!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.89!76.00!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.74!145.05!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.44!26.79!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.83!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.39!418.92!FOSB;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.10!TCF12;;chr20:50179368..50179392,-!p2@NFATC2!1.36!28.34!NFATC2;;chr6:10415276..10415341,-!p2@TFAP2A!1.35!26.02!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.87!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!1.32!430.52!AEBP1;;chr5:321810..321877,+!p1@AHRR!1.25!52.56!AHRR;;chr7:27224795..27224840,-!p2@HOXA11!1.25!16.75!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.48!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.93!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.46!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.81!NFATC4;;chr8:60031619..60031676,-!p1@TOX!1.21!32.98!TOX;;chr5:72744594..72744609,-!p1@FOXD1!1.19!65.18!FOXD1;;chr7:44143978..44143989,+!p2@AEBP1!1.19!26.28!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.17!13.91!HOXC8;;chr15:37392616..37392638,-!p2@MEIS2!1.16!42.00!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr6:19837592..19837621,+!p1@ID4!1.14!78.58!ID4;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.37!HOXA11;;chr3:147111198..147111225,+!p4@ZIC1!1.12!12.11!ZIC1;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.62!MEIS2;;chr14:75745523..75745537,+!p1@FOS!1.09!1339.47!FOS;;chr3:157823517..157823562,-!p1@SHOX2!1.09!12.11!SHOX2;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.66!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.85!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.82!RUNX1T1;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.82!HOXD3;;chr21:36260773..36260804,-!p7@RUNX1!1.04!13.40!RUNX1;;chr4:174451370..174451387,-!p1@HAND2!1.04!10.05!HAND2;;chr6:85474299..85474324,-!p1@TBX18!1.02!17.00!TBX18;;chr10:114710244..114710257,+!p3@TCF7L2!1.01!25.25!TCF7L2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.62!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!1.01!9.28!ZIC1;;chr9:132427972..132428056,+!p1@PRRX2!1.00!11.85!PRRX2;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.02!ZFY;;chr2:239756671..239756732,+!p1@TWIST2!0.99!28.86!TWIST2;;chr8:67525443..67525459,-!p2@MYBL1!0.99!13.14!MYBL1;;chrX:106960180..106960197,-!p2@TSC22D3!0.98!33.24!TSC22D3;;chr8:60031682..60031710,-!p2@TOX!0.98!14.17!TOX;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.42!MEIS2;;chr7:44143997..44144008,+!p3@AEBP1!0.97!10.82!AEBP1;;chr1:119530493..119530572,-!p1@TBX15!0.97!8.24!TBX15;;chr2:66662281..66662308,+!p1@MEIS1!0.96!28.60!MEIS1;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.99!EMX2;;chr12:53614115..53614154,-!p1@RARG!0.94!42.77!RARG;;chr1:197886665..197886732,+!p3@LHX9!0.94!7.73!LHX9;;chr8:93115445..93115462,-!p7@RUNX1T1!0.94!7.73!RUNX1T1;;chr10:63809013..63809041,+!p3@ARID5B!0.93!43.80!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.31!ARID5B;;chr15:37392703..37392717,-!p8@MEIS2!0.92!10.56!MEIS2;;chr7:1577111..1577132,+!p4@MAFK!0.92!8.24!MAFK;;chr19:16435625..16435682,+!p1@KLF2!0.91!239.35!KLF2;;chr4:81118647..81118666,+!p1@PRDM8!0.91!9.53!PRDM8;;chr10:28032421..28032494,-!p2@MKX!0.91!7.21!MKX;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.21!NPAS1;;chr1:197886421..197886432,+!p2@LHX9!0.91!7.21!LHX9;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.83!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.90!17.52!ZNF281;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!9.02!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!0.90!6.96!DLX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.88!80.13!PLAGL1;;chr7:1577076..1577095,+!p5@MAFK!0.87!6.44!MAFK;;chr3:147127142..147127168,+!p1@ZIC1!0.87!6.44!ZIC1;;chr10:28035133..28035148,-!p3@MKX!0.87!6.44!MKX;;chr12:54393880..54393962,+!p1@HOXC9!0.87!6.44!HOXC9;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.89!HIF1A;;chr15:37390850..37390909,-!p3@MEIS2!0.86!12.88!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.85!7.47!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.54!ZNF521;;chr4:95128841..95128865,+!p4@SMARCAD1!0.84!12.62!SMARCAD1;;chr5:158527104..158527135,-!p4@EBF1!0.84!5.93!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.93!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.93!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.82!77.03!NR4A1;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.50!SATB2;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.67!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.67!HOXA9;;chr10:63661437..63661465,+!p2@ARID5B!0.81!112.33!ARID5B;;chr7:99156011..99156036,+!p7@ZNF655!0.81!6.44!ZNF655;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.41!HOXD8;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.41!PRRX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!14.94!GLI3;;chr6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|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.46!286.75!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.06!113.10!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.92!82.96!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.89!76.00!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.74!145.05!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.44!26.79!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.83!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.39!418.92!FOSB;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.10!TCF12;;chr20:50179368..50179392,-!p2@NFATC2!1.36!28.34!NFATC2;;chr6:10415276..10415341,-!p2@TFAP2A!1.35!26.02!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.87!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!1.32!430.52!AEBP1;;chr5:321810..321877,+!p1@AHRR!1.25!52.56!AHRR;;chr7:27224795..27224840,-!p2@HOXA11!1.25!16.75!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.48!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.93!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.46!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.81!NFATC4;;chr8:60031619..60031676,-!p1@TOX!1.21!32.98!TOX;;chr5:72744594..72744609,-!p1@FOXD1!1.19!65.18!FOXD1;;chr7:44143978..44143989,+!p2@AEBP1!1.19!26.28!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.17!13.91!HOXC8;;chr15:37392616..37392638,-!p2@MEIS2!1.16!42.00!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr6:19837592..19837621,+!p1@ID4!1.14!78.58!ID4;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.37!HOXA11;;chr3:147111198..147111225,+!p4@ZIC1!1.12!12.11!ZIC1;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.62!MEIS2;;chr14:75745523..75745537,+!p1@FOS!1.09!1339.47!FOS;;chr3:157823517..157823562,-!p1@SHOX2!1.09!12.11!SHOX2;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.66!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.85!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.82!RUNX1T1;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.82!HOXD3;;chr21:36260773..36260804,-!p7@RUNX1!1.04!13.40!RUNX1;;chr4:174451370..174451387,-!p1@HAND2!1.04!10.05!HAND2;;chr6:85474299..85474324,-!p1@TBX18!1.02!17.00!TBX18;;chr10:114710244..114710257,+!p3@TCF7L2!1.01!25.25!TCF7L2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.62!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!1.01!9.28!ZIC1;;chr9:132427972..132428056,+!p1@PRRX2!1.00!11.85!PRRX2;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.02!ZFY;;chr2:239756671..239756732,+!p1@TWIST2!0.99!28.86!TWIST2;;chr8:67525443..67525459,-!p2@MYBL1!0.99!13.14!MYBL1;;chrX:106960180..106960197,-!p2@TSC22D3!0.98!33.24!TSC22D3;;chr8:60031682..60031710,-!p2@TOX!0.98!14.17!TOX;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.42!MEIS2;;chr7:44143997..44144008,+!p3@AEBP1!0.97!10.82!AEBP1;;chr1:119530493..119530572,-!p1@TBX15!0.97!8.24!TBX15;;chr2:66662281..66662308,+!p1@MEIS1!0.96!28.60!MEIS1;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.99!EMX2;;chr12:53614115..53614154,-!p1@RARG!0.94!42.77!RARG;;chr1:197886665..197886732,+!p3@LHX9!0.94!7.73!LHX9;;chr8:93115445..93115462,-!p7@RUNX1T1!0.94!7.73!RUNX1T1;;chr10:63809013..63809041,+!p3@ARID5B!0.93!43.80!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.31!ARID5B;;chr15:37392703..37392717,-!p8@MEIS2!0.92!10.56!MEIS2;;chr7:1577111..1577132,+!p4@MAFK!0.92!8.24!MAFK;;chr19:16435625..16435682,+!p1@KLF2!0.91!239.35!KLF2;;chr4:81118647..81118666,+!p1@PRDM8!0.91!9.53!PRDM8;;chr10:28032421..28032494,-!p2@MKX!0.91!7.21!MKX;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.21!NPAS1;;chr1:197886421..197886432,+!p2@LHX9!0.91!7.21!LHX9;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.83!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.90!17.52!ZNF281;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!9.02!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!0.90!6.96!DLX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.88!80.13!PLAGL1;;chr7:1577076..1577095,+!p5@MAFK!0.87!6.44!MAFK;;chr3:147127142..147127168,+!p1@ZIC1!0.87!6.44!ZIC1;;chr10:28035133..28035148,-!p3@MKX!0.87!6.44!MKX;;chr12:54393880..54393962,+!p1@HOXC9!0.87!6.44!HOXC9;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.89!HIF1A;;chr15:37390850..37390909,-!p3@MEIS2!0.86!12.88!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.85!7.47!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.54!ZNF521;;chr4:95128841..95128865,+!p4@SMARCAD1!0.84!12.62!SMARCAD1;;chr5:158527104..158527135,-!p4@EBF1!0.84!5.93!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.93!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.93!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.82!77.03!NR4A1;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.50!SATB2;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.67!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.67!HOXA9;;chr10:63661437..63661465,+!p2@ARID5B!0.81!112.33!ARID5B;;chr7:99156011..99156036,+!p7@ZNF655!0.81!6.44!ZNF655;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.41!HOXD8;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.41!PRRX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!14.94!GLI3;;chr6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|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.ctss.bed.gz
|id=FF:14323-155E3
|id=FF:14323-155E3
|is_a=EFO:0002091;;FF:0000210;;FF:0000668
|is_a=EFO:0002091;;FF:0000668
|is_obsolete=
|library_id=CNhs12403
|library_id_phase_based=2:CNhs12403
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14323
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14323
|name=Fibroblast - skin normal, donor1 (nuclear fraction)
|name=Fibroblast - skin normal, donor1 (nuclear fraction)
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12403,LSID914,release011,COMPLETED
|profile_hcage=CNhs12403,LSID914,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=155
|rna_box=155
|rna_catalog_number=custom
|rna_catalog_number=custom
Line 54: Line 75:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=155E3
|rna_tube_id=1.55E+05
|rna_weight_ug=23.3496
|rna_weight_ug=23.3496
|sample_age=25 year old
|sample_age=25 year old
|sample_category=fractionations and perturbations
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=nuclear RNA
|sample_experimental_condition=nuclear RNA
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.8309466224502e-224!GO:0043226;organelle;1.10631567062784e-175!GO:0043229;intracellular organelle;2.39000784129442e-175!GO:0043231;intracellular membrane-bound organelle;3.21390869288649e-170!GO:0043227;membrane-bound organelle;5.45429534730468e-170!GO:0005737;cytoplasm;2.73398608117942e-161!GO:0044422;organelle part;4.57278957460593e-111!GO:0044446;intracellular organelle part;1.25018494415518e-109!GO:0044444;cytoplasmic part;1.39085616746649e-106!GO:0044238;primary metabolic process;4.44907423696574e-88!GO:0043170;macromolecule metabolic process;2.14975204618745e-86!GO:0044237;cellular metabolic process;7.38809521120261e-85!GO:0005515;protein binding;7.71533212790018e-82!GO:0005634;nucleus;3.8698513950095e-77!GO:0032991;macromolecular complex;2.08307881304023e-73!GO:0044428;nuclear part;1.04875718706098e-65!GO:0043233;organelle lumen;1.99392782377062e-65!GO:0031974;membrane-enclosed lumen;1.99392782377062e-65!GO:0003723;RNA binding;1.34247512237921e-60!GO:0030529;ribonucleoprotein complex;1.4935870086021e-57!GO:0043283;biopolymer metabolic process;1.5245866543971e-50!GO:0016043;cellular component organization and biogenesis;1.46041887690467e-47!GO:0019538;protein metabolic process;1.44428324887639e-46!GO:0010467;gene expression;1.41084514235534e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.69712455475517e-44!GO:0033036;macromolecule localization;5.25698852567367e-44!GO:0006396;RNA processing;1.96160141288258e-43!GO:0015031;protein transport;2.32656985544263e-43!GO:0005739;mitochondrion;5.60880562095518e-43!GO:0031981;nuclear lumen;5.75351990727168e-43!GO:0008104;protein localization;3.12990112230876e-40!GO:0044260;cellular macromolecule metabolic process;3.5638247764626e-40!GO:0045184;establishment of protein localization;1.96061084543961e-39!GO:0044267;cellular protein metabolic process;2.06651715913678e-39!GO:0043234;protein complex;1.36138572796242e-38!GO:0031090;organelle membrane;2.05805649739372e-37!GO:0046907;intracellular transport;1.50043521370375e-36!GO:0016071;mRNA metabolic process;3.2343774462065e-36!GO:0006412;translation;1.40272705480959e-34!GO:0005829;cytosol;5.98631872995132e-32!GO:0008380;RNA splicing;3.93154472109101e-31!GO:0006397;mRNA processing;4.77096460446802e-31!GO:0006886;intracellular protein transport;1.51261307674087e-30!GO:0005840;ribosome;1.56829307173624e-29!GO:0000166;nucleotide binding;3.0743625218926e-29!GO:0044429;mitochondrial part;3.38312400308571e-29!GO:0006996;organelle organization and biogenesis;3.38312400308571e-29!GO:0031967;organelle envelope;9.48149198611074e-29!GO:0031975;envelope;1.59398539633782e-28!GO:0003676;nucleic acid binding;5.70139832669678e-28!GO:0005654;nucleoplasm;8.52510697896533e-28!GO:0009058;biosynthetic process;3.48763380431836e-27!GO:0044249;cellular biosynthetic process;1.608293093682e-26!GO:0009059;macromolecule biosynthetic process;1.79815075593162e-26!GO:0065003;macromolecular complex assembly;4.31926359868394e-26!GO:0016070;RNA metabolic process;6.59042370354948e-26!GO:0003735;structural constituent of ribosome;1.74694605770367e-24!GO:0022607;cellular component assembly;1.93164277350255e-24!GO:0043228;non-membrane-bound organelle;2.83538174109059e-24!GO:0043232;intracellular non-membrane-bound organelle;2.83538174109059e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.93992539116396e-23!GO:0033279;ribosomal subunit;1.35488076811944e-22!GO:0044451;nucleoplasm part;1.98164599342732e-22!GO:0051649;establishment of cellular localization;2.04586788368235e-22!GO:0051641;cellular localization;2.98254782615684e-22!GO:0005681;spliceosome;1.69110170089901e-21!GO:0006259;DNA metabolic process;2.98762567814735e-21!GO:0017076;purine nucleotide binding;1.42433854421783e-20!GO:0016462;pyrophosphatase activity;1.59014937693706e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.12667630840658e-20!GO:0017111;nucleoside-triphosphatase activity;2.80693700944092e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.89163294974548e-20!GO:0032553;ribonucleotide binding;3.90897529501987e-20!GO:0032555;purine ribonucleotide binding;3.90897529501987e-20!GO:0048770;pigment granule;4.80152466557909e-19!GO:0042470;melanosome;4.80152466557909e-19!GO:0016874;ligase activity;6.19342599321544e-19!GO:0005524;ATP binding;9.37671072238766e-19!GO:0030554;adenyl nucleotide binding;9.53935056345354e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.30470268537105e-18!GO:0032559;adenyl ribonucleotide binding;1.6458238897187e-18!GO:0005740;mitochondrial envelope;7.56847433173637e-18!GO:0008134;transcription factor binding;1.09369642277321e-17!GO:0031966;mitochondrial membrane;3.04591332566245e-17!GO:0048193;Golgi vesicle transport;9.87148551766945e-17!GO:0006457;protein folding;1.45251312894501e-16!GO:0006119;oxidative phosphorylation;1.97147393808725e-16!GO:0019866;organelle inner membrane;1.99560528691159e-16!GO:0006512;ubiquitin cycle;5.34825489609699e-16!GO:0005783;endoplasmic reticulum;1.18971554280479e-15!GO:0043285;biopolymer catabolic process;1.70486587461737e-15!GO:0012505;endomembrane system;1.99964722992438e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.32861762481542e-15!GO:0005743;mitochondrial inner membrane;2.91317119196591e-15!GO:0007049;cell cycle;3.39961576605438e-15!GO:0019941;modification-dependent protein catabolic process;4.9532257929853e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.9532257929853e-15!GO:0006511;ubiquitin-dependent protein catabolic process;5.08132000729927e-15!GO:0044265;cellular macromolecule catabolic process;5.12380460259731e-15!GO:0044257;cellular protein catabolic process;5.32435149817573e-15!GO:0005794;Golgi apparatus;1.21168753823372e-14!GO:0005730;nucleolus;1.80851526323465e-14!GO:0044445;cytosolic part;1.80851526323465e-14!GO:0031980;mitochondrial lumen;2.0972519563601e-14!GO:0005759;mitochondrial matrix;2.0972519563601e-14!GO:0008135;translation factor activity, nucleic acid binding;2.60771485912314e-14!GO:0016192;vesicle-mediated transport;2.61305781426512e-14!GO:0030163;protein catabolic process;2.74889942925959e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.82845309117743e-14!GO:0006605;protein targeting;2.85620412934887e-14!GO:0050794;regulation of cellular process;3.59887078068419e-14!GO:0009057;macromolecule catabolic process;3.74702055670284e-14!GO:0022618;protein-RNA complex assembly;7.91849123528883e-14!GO:0004386;helicase activity;1.50538445505091e-13!GO:0006974;response to DNA damage stimulus;9.86181964565988e-13!GO:0003712;transcription cofactor activity;1.27646668071121e-12!GO:0051186;cofactor metabolic process;1.39122550901985e-12!GO:0016887;ATPase activity;1.67700072697159e-12!GO:0043412;biopolymer modification;1.68632152194808e-12!GO:0044455;mitochondrial membrane part;2.22507701412597e-12!GO:0005793;ER-Golgi intermediate compartment;2.51467636018887e-12!GO:0044432;endoplasmic reticulum part;4.36268653607765e-12!GO:0051082;unfolded protein binding;4.74436828720705e-12!GO:0042623;ATPase activity, coupled;5.64321221526227e-12!GO:0044248;cellular catabolic process;5.70061286416609e-12!GO:0031965;nuclear membrane;8.01126090071954e-12!GO:0008026;ATP-dependent helicase activity;8.86963698462068e-12!GO:0015935;small ribosomal subunit;1.04991250687293e-11!GO:0015934;large ribosomal subunit;1.08621877405527e-11!GO:0016604;nuclear body;1.78312284512634e-11!GO:0005635;nuclear envelope;1.78312284512634e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.91089900958002e-11!GO:0000375;RNA splicing, via transesterification reactions;1.91089900958002e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.91089900958002e-11!GO:0022402;cell cycle process;2.13740101338031e-11!GO:0006913;nucleocytoplasmic transport;4.83937937030827e-11!GO:0006464;protein modification process;5.50423877319526e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.50756508534206e-11!GO:0051169;nuclear transport;8.84217344311321e-11!GO:0005746;mitochondrial respiratory chain;8.90591170049071e-11!GO:0048523;negative regulation of cellular process;9.86631868450661e-11!GO:0003743;translation initiation factor activity;1.07747682191022e-10!GO:0044453;nuclear membrane part;2.13673393080206e-10!GO:0006461;protein complex assembly;2.50225517264365e-10!GO:0006281;DNA repair;2.59727483641421e-10!GO:0043687;post-translational protein modification;2.74988154070656e-10!GO:0016607;nuclear speck;4.11479951856979e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.6511167852017e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.6511167852017e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.6511167852017e-10!GO:0050789;regulation of biological process;4.98726202287407e-10!GO:0006732;coenzyme metabolic process;5.70551859087579e-10!GO:0008565;protein transporter activity;6.71482769729611e-10!GO:0050136;NADH dehydrogenase (quinone) activity;7.79286130727539e-10!GO:0003954;NADH dehydrogenase activity;7.79286130727539e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.79286130727539e-10!GO:0043038;amino acid activation;9.01457510810565e-10!GO:0006418;tRNA aminoacylation for protein translation;9.01457510810565e-10!GO:0043039;tRNA aminoacylation;9.01457510810565e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.01457510810565e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.03057342025774e-09!GO:0042254;ribosome biogenesis and assembly;1.31018634604487e-09!GO:0006366;transcription from RNA polymerase II promoter;1.32668105569286e-09!GO:0008639;small protein conjugating enzyme activity;1.33012455009091e-09!GO:0006399;tRNA metabolic process;1.41409851851194e-09!GO:0004842;ubiquitin-protein ligase activity;1.67805792694393e-09!GO:0000278;mitotic cell cycle;1.83586421568259e-09!GO:0030120;vesicle coat;2.61019714476017e-09!GO:0030662;coated vesicle membrane;2.61019714476017e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.24869583804559e-09!GO:0006446;regulation of translational initiation;3.41332431302553e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.31034249217437e-09!GO:0009719;response to endogenous stimulus;5.22373653040588e-09!GO:0006413;translational initiation;5.65259217417466e-09!GO:0019222;regulation of metabolic process;5.80826148947961e-09!GO:0051276;chromosome organization and biogenesis;6.19402493471672e-09!GO:0019787;small conjugating protein ligase activity;6.27339573435178e-09!GO:0048519;negative regulation of biological process;9.36620553366177e-09!GO:0048475;coated membrane;9.71958963633984e-09!GO:0030117;membrane coat;9.71958963633984e-09!GO:0005643;nuclear pore;1.00611635283224e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.17748936284961e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.17748936284961e-08!GO:0042773;ATP synthesis coupled electron transport;1.17748936284961e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.44478041797741e-08!GO:0045271;respiratory chain complex I;1.44478041797741e-08!GO:0005747;mitochondrial respiratory chain complex I;1.44478041797741e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.69400072452956e-08!GO:0009259;ribonucleotide metabolic process;1.93606212093759e-08!GO:0012501;programmed cell death;3.33187272365127e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.48144832165499e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.10259418288397e-08!GO:0006323;DNA packaging;4.58367938067208e-08!GO:0009055;electron carrier activity;4.84166349054968e-08!GO:0045333;cellular respiration;4.99141132437893e-08!GO:0006163;purine nucleotide metabolic process;5.16831787532403e-08!GO:0009060;aerobic respiration;5.21482841195293e-08!GO:0006403;RNA localization;5.23515515528156e-08!GO:0009150;purine ribonucleotide metabolic process;5.52532707530635e-08!GO:0051726;regulation of cell cycle;5.70084732814269e-08!GO:0009056;catabolic process;5.94351376922021e-08!GO:0050657;nucleic acid transport;5.94932727934848e-08!GO:0051236;establishment of RNA localization;5.94932727934848e-08!GO:0050658;RNA transport;5.94932727934848e-08!GO:0006915;apoptosis;6.79320861355125e-08!GO:0000074;regulation of progression through cell cycle;6.79742586283612e-08!GO:0016881;acid-amino acid ligase activity;7.63125467082799e-08!GO:0017038;protein import;8.51640730446979e-08!GO:0016568;chromatin modification;9.56558853976768e-08!GO:0008219;cell death;9.7645105664588e-08!GO:0016265;death;9.7645105664588e-08!GO:0016564;transcription repressor activity;1.01343170186512e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.05066105865298e-07!GO:0043566;structure-specific DNA binding;1.24795564635953e-07!GO:0006164;purine nucleotide biosynthetic process;1.35653425956968e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.38852308582165e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.39565645932223e-07!GO:0005789;endoplasmic reticulum membrane;1.58307931834416e-07!GO:0009260;ribonucleotide biosynthetic process;1.68110313178806e-07!GO:0005768;endosome;1.84726827806856e-07!GO:0031324;negative regulation of cellular metabolic process;1.92270428268701e-07!GO:0046930;pore complex;2.11197980709721e-07!GO:0016787;hydrolase activity;2.41512878552604e-07!GO:0005788;endoplasmic reticulum lumen;2.78916733432048e-07!GO:0003714;transcription corepressor activity;3.38362255895649e-07!GO:0005798;Golgi-associated vesicle;3.61296955055796e-07!GO:0015986;ATP synthesis coupled proton transport;3.75342934770735e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.75342934770735e-07!GO:0006099;tricarboxylic acid cycle;3.75710489505615e-07!GO:0046356;acetyl-CoA catabolic process;3.75710489505615e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.80163734521273e-07!GO:0015630;microtubule cytoskeleton;3.88394387776994e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.38156676932685e-07!GO:0051187;cofactor catabolic process;4.92732026601952e-07!GO:0006260;DNA replication;5.68166504393083e-07!GO:0009109;coenzyme catabolic process;5.71799970861411e-07!GO:0005667;transcription factor complex;6.35319813558104e-07!GO:0065002;intracellular protein transport across a membrane;6.69405509041543e-07!GO:0005761;mitochondrial ribosome;7.04061077898091e-07!GO:0000313;organellar ribosome;7.04061077898091e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.34555152440641e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.34555152440641e-07!GO:0009141;nucleoside triphosphate metabolic process;7.55952667089831e-07!GO:0003724;RNA helicase activity;1.10201590503002e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.20657064918574e-06!GO:0046034;ATP metabolic process;1.2401952009812e-06!GO:0031323;regulation of cellular metabolic process;1.40842866160913e-06!GO:0051028;mRNA transport;1.49825220092776e-06!GO:0006084;acetyl-CoA metabolic process;1.62618817620012e-06!GO:0009892;negative regulation of metabolic process;1.68555644422296e-06!GO:0000087;M phase of mitotic cell cycle;1.72446153416169e-06!GO:0051188;cofactor biosynthetic process;1.72446153416169e-06!GO:0000151;ubiquitin ligase complex;1.7819400147988e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.8404646261319e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8404646261319e-06!GO:0003697;single-stranded DNA binding;1.8404646261319e-06!GO:0065007;biological regulation;1.99346862066922e-06!GO:0007067;mitosis;2.17898476539043e-06!GO:0051246;regulation of protein metabolic process;2.26584540305091e-06!GO:0051170;nuclear import;2.3970893070865e-06!GO:0019829;cation-transporting ATPase activity;2.82373782711555e-06!GO:0003924;GTPase activity;3.21291807953041e-06!GO:0006606;protein import into nucleus;3.23878199472945e-06!GO:0019899;enzyme binding;3.4486647233269e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.59691495642405e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.59691495642405e-06!GO:0006350;transcription;3.70874476635914e-06!GO:0005694;chromosome;3.8485302361703e-06!GO:0007010;cytoskeleton organization and biogenesis;3.9299259521608e-06!GO:0022403;cell cycle phase;4.39468583123547e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.630079777996e-06!GO:0003713;transcription coactivator activity;4.65012906396379e-06!GO:0006754;ATP biosynthetic process;5.12737739194546e-06!GO:0006753;nucleoside phosphate metabolic process;5.12737739194546e-06!GO:0005813;centrosome;5.21468392173662e-06!GO:0051789;response to protein stimulus;5.57527371688668e-06!GO:0006986;response to unfolded protein;5.57527371688668e-06!GO:0031988;membrane-bound vesicle;6.0075928285287e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.22680807390639e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.24260945070498e-06!GO:0030029;actin filament-based process;6.43006004643903e-06!GO:0031252;leading edge;6.9810939938819e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.17194689130469e-06!GO:0044440;endosomal part;7.1969870158017e-06!GO:0010008;endosome membrane;7.1969870158017e-06!GO:0044431;Golgi apparatus part;7.25289701088238e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.72024204959939e-06!GO:0016563;transcription activator activity;8.00908587392074e-06!GO:0045786;negative regulation of progression through cell cycle;8.4014255651624e-06!GO:0016481;negative regulation of transcription;8.43939031082572e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.51460160725673e-06!GO:0006364;rRNA processing;8.69518590111256e-06!GO:0032446;protein modification by small protein conjugation;9.56103414457275e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.06908048536915e-05!GO:0005815;microtubule organizing center;1.15397617964346e-05!GO:0009117;nucleotide metabolic process;1.34152595891934e-05!GO:0006793;phosphorus metabolic process;1.3624978624659e-05!GO:0006796;phosphate metabolic process;1.3624978624659e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.38079968789946e-05!GO:0051301;cell division;1.54616722683082e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.54616722683082e-05!GO:0016310;phosphorylation;1.57709448258869e-05!GO:0016072;rRNA metabolic process;1.58710363768405e-05!GO:0016567;protein ubiquitination;1.74666248684728e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.76148264423883e-05!GO:0008092;cytoskeletal protein binding;1.81152968643488e-05!GO:0010468;regulation of gene expression;1.82347243059694e-05!GO:0006752;group transfer coenzyme metabolic process;1.9433496903267e-05!GO:0043069;negative regulation of programmed cell death;2.18459199588757e-05!GO:0043067;regulation of programmed cell death;2.27350038140051e-05!GO:0031982;vesicle;2.30378498570565e-05!GO:0031410;cytoplasmic vesicle;2.61997821130867e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.79688124179384e-05!GO:0043623;cellular protein complex assembly;2.87163464301698e-05!GO:0042981;regulation of apoptosis;3.11352060776511e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.19717688731324e-05!GO:0004298;threonine endopeptidase activity;3.27410522148022e-05!GO:0015078;hydrogen ion transmembrane transporter activity;3.27773741054616e-05!GO:0006613;cotranslational protein targeting to membrane;3.31181297582194e-05!GO:0009108;coenzyme biosynthetic process;3.48718418889184e-05!GO:0008361;regulation of cell size;3.76681152525207e-05!GO:0016740;transferase activity;4.15260882102287e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.20407001730272e-05!GO:0006916;anti-apoptosis;4.61459993482627e-05!GO:0016049;cell growth;4.73360954761843e-05!GO:0043066;negative regulation of apoptosis;4.85703751098996e-05!GO:0016491;oxidoreductase activity;5.07704595365011e-05!GO:0016363;nuclear matrix;5.45513591597051e-05!GO:0045259;proton-transporting ATP synthase complex;5.53661630517986e-05!GO:0005773;vacuole;5.56765352751396e-05!GO:0005770;late endosome;5.75983065770574e-05!GO:0030532;small nuclear ribonucleoprotein complex;5.94192420724336e-05!GO:0016853;isomerase activity;6.01134570648349e-05!GO:0008186;RNA-dependent ATPase activity;7.17343842221714e-05!GO:0003690;double-stranded DNA binding;7.63481188119233e-05!GO:0000245;spliceosome assembly;7.67875095448475e-05!GO:0030133;transport vesicle;7.88440776201077e-05!GO:0030663;COPI coated vesicle membrane;8.09408047759331e-05!GO:0030126;COPI vesicle coat;8.09408047759331e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.05002344163996e-05!GO:0030867;rough endoplasmic reticulum membrane;0.000101354498543443!GO:0048471;perinuclear region of cytoplasm;0.000106763283146359!GO:0006891;intra-Golgi vesicle-mediated transport;0.00011857719533942!GO:0032774;RNA biosynthetic process;0.000122899452947021!GO:0033116;ER-Golgi intermediate compartment membrane;0.000130551817083396!GO:0006351;transcription, DNA-dependent;0.00014443541248765!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147913233506202!GO:0044427;chromosomal part;0.00015487617059648!GO:0016197;endosome transport;0.000166930660840671!GO:0016859;cis-trans isomerase activity;0.000195858101605771!GO:0051168;nuclear export;0.000196736669321835!GO:0005905;coated pit;0.000201324842545008!GO:0000279;M phase;0.00021582370691994!GO:0004004;ATP-dependent RNA helicase activity;0.000228680106331129!GO:0030137;COPI-coated vesicle;0.000229676251265252!GO:0008047;enzyme activator activity;0.000255052958462575!GO:0005769;early endosome;0.000275698057174111!GO:0065004;protein-DNA complex assembly;0.000279295549341102!GO:0044262;cellular carbohydrate metabolic process;0.000291976317160044!GO:0001558;regulation of cell growth;0.000298504091404955!GO:0006333;chromatin assembly or disassembly;0.000307124345829951!GO:0003729;mRNA binding;0.000336487324854053!GO:0000139;Golgi membrane;0.000349795434767535!GO:0045449;regulation of transcription;0.000361325237101668!GO:0016779;nucleotidyltransferase activity;0.000367136849380759!GO:0006612;protein targeting to membrane;0.000369662707958924!GO:0051427;hormone receptor binding;0.000395855568295221!GO:0006091;generation of precursor metabolites and energy;0.00039953195567381!GO:0005791;rough endoplasmic reticulum;0.000411629297948644!GO:0007243;protein kinase cascade;0.000417550173841268!GO:0008270;zinc ion binding;0.000425012429513427!GO:0046914;transition metal ion binding;0.000441733598799394!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000445496815207827!GO:0000323;lytic vacuole;0.000463823755192159!GO:0005764;lysosome;0.000463823755192159!GO:0006414;translational elongation;0.000480831199787543!GO:0030134;ER to Golgi transport vesicle;0.000516234273508639!GO:0031968;organelle outer membrane;0.000518613877442232!GO:0005048;signal sequence binding;0.000528393386655998!GO:0004576;oligosaccharyl transferase activity;0.000540898984430905!GO:0030658;transport vesicle membrane;0.000549481624997009!GO:0008250;oligosaccharyl transferase complex;0.000561296201968765!GO:0004177;aminopeptidase activity;0.000571478759220696!GO:0005885;Arp2/3 protein complex;0.000623333236527282!GO:0019867;outer membrane;0.00062948931284422!GO:0007005;mitochondrion organization and biogenesis;0.000645636237468983!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000668984499279846!GO:0019843;rRNA binding;0.000743417555931889!GO:0035257;nuclear hormone receptor binding;0.000747525223195837!GO:0005819;spindle;0.000791664929147792!GO:0030127;COPII vesicle coat;0.000828058382631654!GO:0012507;ER to Golgi transport vesicle membrane;0.000828058382631654!GO:0005525;GTP binding;0.000828058382631654!GO:0045454;cell redox homeostasis;0.000836362889156928!GO:0000059;protein import into nucleus, docking;0.000888394606137382!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000890696036910013!GO:0000785;chromatin;0.000977935997563105!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00108232294381459!GO:0043021;ribonucleoprotein binding;0.00109488663125759!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00112725026370972!GO:0043284;biopolymer biosynthetic process;0.00113865656134113!GO:0050662;coenzyme binding;0.00114361678662783!GO:0051920;peroxiredoxin activity;0.00119646364346217!GO:0003678;DNA helicase activity;0.0013067288595101!GO:0004674;protein serine/threonine kinase activity;0.00134720068334103!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00159444330313311!GO:0048522;positive regulation of cellular process;0.00162654713162528!GO:0045892;negative regulation of transcription, DNA-dependent;0.00163652905980044!GO:0008022;protein C-terminus binding;0.00165733528177!GO:0030118;clathrin coat;0.00166357808485515!GO:0008654;phospholipid biosynthetic process;0.00167055702872751!GO:0006892;post-Golgi vesicle-mediated transport;0.00169599735081002!GO:0005096;GTPase activator activity;0.00176177445243449!GO:0044420;extracellular matrix part;0.00180804568421129!GO:0006402;mRNA catabolic process;0.00180939105069448!GO:0051329;interphase of mitotic cell cycle;0.00189879052403472!GO:0030660;Golgi-associated vesicle membrane;0.00190369737921132!GO:0006355;regulation of transcription, DNA-dependent;0.00191325326139356!GO:0003684;damaged DNA binding;0.00202147163876171!GO:0005581;collagen;0.00204394820061446!GO:0006289;nucleotide-excision repair;0.00208276619217908!GO:0007050;cell cycle arrest;0.00236830800614573!GO:0030132;clathrin coat of coated pit;0.00238903822880739!GO:0051252;regulation of RNA metabolic process;0.00252190329788023!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00257236676925146!GO:0015399;primary active transmembrane transporter activity;0.00257236676925146!GO:0005741;mitochondrial outer membrane;0.00284896836110622!GO:0003746;translation elongation factor activity;0.00289927618571409!GO:0032561;guanyl ribonucleotide binding;0.00289927618571409!GO:0019001;guanyl nucleotide binding;0.00289927618571409!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00291317047510389!GO:0030521;androgen receptor signaling pathway;0.00293791850740405!GO:0006261;DNA-dependent DNA replication;0.0029746910119053!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00318133212452231!GO:0051325;interphase;0.00318202866055424!GO:0045045;secretory pathway;0.00321738064206939!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00325663911583476!GO:0019752;carboxylic acid metabolic process;0.00343933545683615!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00352922028696462!GO:0031124;mRNA 3'-end processing;0.00377976460008492!GO:0005874;microtubule;0.00381164275292882!GO:0048500;signal recognition particle;0.00383031616739221!GO:0007030;Golgi organization and biogenesis;0.00389872893140657!GO:0019798;procollagen-proline dioxygenase activity;0.00397031583625089!GO:0006082;organic acid metabolic process;0.0040307143503687!GO:0018196;peptidyl-asparagine modification;0.00407856741001311!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00407856741001311!GO:0031625;ubiquitin protein ligase binding;0.00441246944694573!GO:0042802;identical protein binding;0.00441246944694573!GO:0031543;peptidyl-proline dioxygenase activity;0.00460768927771501!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0046846422432893!GO:0000049;tRNA binding;0.00468829557525692!GO:0051287;NAD binding;0.00468829557525692!GO:0015631;tubulin binding;0.00470341794108502!GO:0001726;ruffle;0.00471487033225977!GO:0009165;nucleotide biosynthetic process;0.00471487033225977!GO:0065009;regulation of a molecular function;0.00485473750896673!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00490240725538788!GO:0003682;chromatin binding;0.00495888207119757!GO:0003779;actin binding;0.00495888207119757!GO:0005762;mitochondrial large ribosomal subunit;0.0050398195642576!GO:0000315;organellar large ribosomal subunit;0.0050398195642576!GO:0008139;nuclear localization sequence binding;0.00533794154894717!GO:0005583;fibrillar collagen;0.00550995731400178!GO:0017166;vinculin binding;0.00569445966499554!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00594614833647287!GO:0007264;small GTPase mediated signal transduction;0.00606025416942621!GO:0030027;lamellipodium;0.00683604186810947!GO:0048037;cofactor binding;0.00683722432243733!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00685877930036407!GO:0007265;Ras protein signal transduction;0.00705243199816789!GO:0003677;DNA binding;0.0071379580159399!GO:0046483;heterocycle metabolic process;0.00730818435713837!GO:0003711;transcription elongation regulator activity;0.00739614768143505!GO:0035258;steroid hormone receptor binding;0.00739614768143505!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00869619263955297!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00869619263955297!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00887651060107999!GO:0045047;protein targeting to ER;0.00887651060107999!GO:0005099;Ras GTPase activator activity;0.00901881815241668!GO:0006520;amino acid metabolic process;0.00901881815241668!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00901881815241668!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00901881815241668!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00901881815241668!GO:0031418;L-ascorbic acid binding;0.00951291325510212!GO:0045941;positive regulation of transcription;0.00975070929531458!GO:0045893;positive regulation of transcription, DNA-dependent;0.00981730768771233!GO:0005083;small GTPase regulator activity;0.00982622589456918!GO:0046489;phosphoinositide biosynthetic process;0.0102256621951853!GO:0006383;transcription from RNA polymerase III promoter;0.0104076646902466!GO:0051128;regulation of cellular component organization and biogenesis;0.0104874097369053!GO:0006354;RNA elongation;0.0109242577910007!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0109503638275864!GO:0050681;androgen receptor binding;0.0109539520550697!GO:0006401;RNA catabolic process;0.0110666784104727!GO:0040008;regulation of growth;0.0110728537975019!GO:0000118;histone deacetylase complex;0.0111114493476392!GO:0003756;protein disulfide isomerase activity;0.0111778228013602!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0111778228013602!GO:0044452;nucleolar part;0.011241938250451!GO:0031901;early endosome membrane;0.0117394919067024!GO:0005595;collagen type XII;0.0117639537541435!GO:0051052;regulation of DNA metabolic process;0.0119304196956814!GO:0006310;DNA recombination;0.0120003928456951!GO:0005869;dynactin complex;0.0120244989027576!GO:0004003;ATP-dependent DNA helicase activity;0.0120998868958955!GO:0031123;RNA 3'-end processing;0.0120998868958955!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0120998868958955!GO:0016044;membrane organization and biogenesis;0.0122497737034999!GO:0030518;steroid hormone receptor signaling pathway;0.0123574072413501!GO:0051539;4 iron, 4 sulfur cluster binding;0.012377218765007!GO:0006635;fatty acid beta-oxidation;0.0124473851053681!GO:0003702;RNA polymerase II transcription factor activity;0.0125022378421166!GO:0008312;7S RNA binding;0.0125320397005052!GO:0043492;ATPase activity, coupled to movement of substances;0.0125518548766324!GO:0030041;actin filament polymerization;0.0127927907712934!GO:0006405;RNA export from nucleus;0.0131829209060703!GO:0008180;signalosome;0.0134408480643385!GO:0045792;negative regulation of cell size;0.0137894158661835!GO:0008154;actin polymerization and/or depolymerization;0.0137985854764582!GO:0030032;lamellipodium biogenesis;0.0137985854764582!GO:0030119;AP-type membrane coat adaptor complex;0.0138913721999806!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0145459945150843!GO:0030131;clathrin adaptor complex;0.014675048697433!GO:0005832;chaperonin-containing T-complex;0.0148791373802766!GO:0030659;cytoplasmic vesicle membrane;0.0149376632920132!GO:0006352;transcription initiation;0.0149712934562177!GO:0006607;NLS-bearing substrate import into nucleus;0.0150379031258512!GO:0001527;microfibril;0.0156099809487658!GO:0030308;negative regulation of cell growth;0.0156958560200758!GO:0032200;telomere organization and biogenesis;0.01583031205112!GO:0000723;telomere maintenance;0.01583031205112!GO:0008094;DNA-dependent ATPase activity;0.0162747569704563!GO:0006302;double-strand break repair;0.0165137656852279!GO:0016251;general RNA polymerase II transcription factor activity;0.0167122630563047!GO:0003899;DNA-directed RNA polymerase activity;0.0167122630563047!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0168099312708865!GO:0007034;vacuolar transport;0.0171482671647318!GO:0031461;cullin-RING ubiquitin ligase complex;0.0171904457906535!GO:0008234;cysteine-type peptidase activity;0.0172165995385224!GO:0031902;late endosome membrane;0.017250007195174!GO:0048468;cell development;0.0172852884557495!GO:0016301;kinase activity;0.0178194339313411!GO:0006378;mRNA polyadenylation;0.0180033743146935!GO:0030125;clathrin vesicle coat;0.0181817930627111!GO:0030665;clathrin coated vesicle membrane;0.0181817930627111!GO:0005862;muscle thin filament tropomyosin;0.0184986448608231!GO:0005938;cell cortex;0.0185832721704269!GO:0015992;proton transport;0.0185832721704269!GO:0006818;hydrogen transport;0.0189401137464254!GO:0030695;GTPase regulator activity;0.0196947503952996!GO:0005591;collagen type VIII;0.0198421439198195!GO:0005598;short-chain collagen;0.0198421439198195!GO:0031072;heat shock protein binding;0.0199220466658926!GO:0043087;regulation of GTPase activity;0.0199220466658926!GO:0031529;ruffle organization and biogenesis;0.0201371723258652!GO:0007052;mitotic spindle organization and biogenesis;0.0205201332780336!GO:0005684;U2-dependent spliceosome;0.0205201332780336!GO:0007041;lysosomal transport;0.0206141096858609!GO:0007051;spindle organization and biogenesis;0.0206598394639817!GO:0043488;regulation of mRNA stability;0.0211908096457579!GO:0043487;regulation of RNA stability;0.0211908096457579!GO:0046474;glycerophospholipid biosynthetic process;0.0213758045153426!GO:0005856;cytoskeleton;0.0218694354907322!GO:0000339;RNA cap binding;0.0219487673529688!GO:0008033;tRNA processing;0.0220448708921871!GO:0000922;spindle pole;0.0220750304394995!GO:0006007;glucose catabolic process;0.0224035555565852!GO:0000075;cell cycle checkpoint;0.0225248646104575!GO:0006984;ER-nuclear signaling pathway;0.0227992725706906!GO:0044433;cytoplasmic vesicle part;0.0229842650378497!GO:0048487;beta-tubulin binding;0.0237826115582914!GO:0007160;cell-matrix adhesion;0.023926098196611!GO:0000781;chromosome, telomeric region;0.0243338007533926!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0246199116795097!GO:0009967;positive regulation of signal transduction;0.025159954825618!GO:0000096;sulfur amino acid metabolic process;0.0256543519333618!GO:0032940;secretion by cell;0.0260329851616589!GO:0031497;chromatin assembly;0.0261390996047017!GO:0030833;regulation of actin filament polymerization;0.0262920546643086!GO:0016408;C-acyltransferase activity;0.0263616152007975!GO:0043022;ribosome binding;0.0265891284312859!GO:0009112;nucleobase metabolic process;0.027388503218632!GO:0008652;amino acid biosynthetic process;0.0274357557193422!GO:0006334;nucleosome assembly;0.0277453235195699!GO:0043433;negative regulation of transcription factor activity;0.0279133557295033!GO:0035035;histone acetyltransferase binding;0.0281290148587428!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0281641749422603!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0281641749422603!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0281641749422603!GO:0033043;regulation of organelle organization and biogenesis;0.0281641749422603!GO:0012506;vesicle membrane;0.0289370540934801!GO:0031589;cell-substrate adhesion;0.0291448069026414!GO:0000209;protein polyubiquitination;0.029235664747624!GO:0045926;negative regulation of growth;0.029235664747624!GO:0007040;lysosome organization and biogenesis;0.0298700596570472!GO:0022408;negative regulation of cell-cell adhesion;0.0312640081020748!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0312640081020748!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0312640081020748!GO:0006740;NADPH regeneration;0.0313458694803718!GO:0006098;pentose-phosphate shunt;0.0313458694803718!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0328820545096333!GO:0033673;negative regulation of kinase activity;0.0338201028749662!GO:0006469;negative regulation of protein kinase activity;0.0338201028749662!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0347507842641981!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0347507842641981!GO:0051348;negative regulation of transferase activity;0.0348872544513389!GO:0051271;negative regulation of cell motility;0.0349531258562603!GO:0000314;organellar small ribosomal subunit;0.0349541460792414!GO:0005763;mitochondrial small ribosomal subunit;0.0349541460792414!GO:0043495;protein anchor;0.0350311253951437!GO:0007004;telomere maintenance via telomerase;0.0350460866871558!GO:0006497;protein amino acid lipidation;0.0350659404582452!GO:0005801;cis-Golgi network;0.0351847131011541!GO:0004527;exonuclease activity;0.0355053294403949!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0363484057437731!GO:0016569;covalent chromatin modification;0.0367667759185993!GO:0009225;nucleotide-sugar metabolic process;0.0369644761978744!GO:0000287;magnesium ion binding;0.0376160064907984!GO:0019318;hexose metabolic process;0.0377686026587254!GO:0006376;mRNA splice site selection;0.0378323820501117!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0378323820501117!GO:0005586;collagen type III;0.0378487037391913!GO:0004287;prolyl oligopeptidase activity;0.0379522364590711!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0379522364590711!GO:0008168;methyltransferase activity;0.0380662911154616!GO:0048518;positive regulation of biological process;0.0381141601434664!GO:0016741;transferase activity, transferring one-carbon groups;0.0382513778140891!GO:0001872;zymosan binding;0.0385980883022303!GO:0001878;response to yeast;0.0385980883022303!GO:0016579;protein deubiquitination;0.0388224121078758!GO:0005996;monosaccharide metabolic process;0.039106249982612!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0393391576656283!GO:0051087;chaperone binding;0.0393391576656283!GO:0005774;vacuolar membrane;0.0399994588810261!GO:0006611;protein export from nucleus;0.0400794449447097!GO:0042168;heme metabolic process;0.0400794449447097!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0404087324200803!GO:0030522;intracellular receptor-mediated signaling pathway;0.0407245692595672!GO:0001952;regulation of cell-matrix adhesion;0.0407245692595672!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0409044381558737!GO:0001666;response to hypoxia;0.0421015597911327!GO:0016570;histone modification;0.0427114408221797!GO:0005100;Rho GTPase activator activity;0.0428829376386284!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0430296203630202!GO:0051540;metal cluster binding;0.0437163683574116!GO:0051536;iron-sulfur cluster binding;0.0437163683574116!GO:0050790;regulation of catalytic activity;0.0438787352377525!GO:0006509;membrane protein ectodomain proteolysis;0.0445067538594589!GO:0033619;membrane protein proteolysis;0.0445067538594589!GO:0006778;porphyrin metabolic process;0.0446099518477979!GO:0033013;tetrapyrrole metabolic process;0.0446099518477979!GO:0000082;G1/S transition of mitotic cell cycle;0.0452950539890268!GO:0006338;chromatin remodeling;0.0474336275524319!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0476741523784867!GO:0006368;RNA elongation from RNA polymerase II promoter;0.048083646074912!GO:0007033;vacuole organization and biogenesis;0.0486956509456381!GO:0047485;protein N-terminus binding;0.0486956509456381!GO:0006379;mRNA cleavage;0.0487527772614905
|sample_id=14323
|sample_id=14323
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=skin
|sample_tissue=skin
|top_motifs=ALX4:2.26356298456;NKX3-1:2.21007183549;HIF1A:2.11385417952;NR3C1:2.08524813019;XBP1:1.78914129541;EN1,2:1.73421006159;SRF:1.73061653973;GZF1:1.68905069395;ESR1:1.65681213173;RXRA_VDR{dimer}:1.64686137249;NKX3-2:1.58118801103;TEAD1:1.57990303629;FOXL1:1.51538294664;HBP1_HMGB_SSRP1_UBTF:1.46596241031;ZNF238:1.44512642455;UFEwm:1.43164407323;GATA4:1.42354236806;PRDM1:1.39175439524;HMGA1,2:1.35244756761;HMX1:1.34921360841;MYBL2:1.34554130182;KLF4:1.32933089054;GTF2A1,2:1.30455208687;HSF1,2:1.29353908286;RXR{A,B,G}:1.27607028207;SOX17:1.24973650547;MZF1:1.21258628505;AHR_ARNT_ARNT2:1.13843627357;EBF1:1.07958316697;HOX{A5,B5}:1.06877827186;MAFB:1.03099689116;GFI1B:1.01322719212;ATF6:0.991610458142;MTE{core}:0.99150673975;AIRE:0.978265208792;EVI1:0.975437492384;TOPORS:0.972186287259;NANOG{mouse}:0.967892898817;TP53:0.951846857062;GLI1..3:0.9463881537;GTF2I:0.944420205745;EP300:0.941014812529;MAZ:0.939821449803;TEF:0.938382198837;TAL1_TCF{3,4,12}:0.882659664458;PAX8:0.83964738975;HAND1,2:0.83233313818;SPZ1:0.828057993928;ZNF384:0.825767254333;NFATC1..3:0.785512196209;NKX2-1,4:0.756289222682;TLX1..3_NFIC{dimer}:0.75371235562;RREB1:0.697030157884;ZIC1..3:0.695839078403;NFIX:0.681230938528;NFE2L1:0.669642395213;HLF:0.663396644519;GFI1:0.644444691674;IKZF1:0.637586477164;GCM1,2:0.62928609779;STAT1,3:0.603922249166;ARID5B:0.594456765502;TFAP2{A,C}:0.571795366922;RFX1:0.549483119634;PPARG:0.535356327007;ELK1,4_GABP{A,B1}:0.534981630403;POU3F1..4:0.495291082007;TLX2:0.476703548684;NR1H4:0.470292184256;TBX4,5:0.452006788342;PATZ1:0.432485374914;MEF2{A,B,C,D}:0.413869222303;NFE2L2:0.408645180091;TFAP4:0.40343214868;SMAD1..7,9:0.402906929446;SP1:0.402426697154;ZNF148:0.399076886648;HES1:0.388321057636;PDX1:0.370154615053;FOXD3:0.368464348524;POU1F1:0.365103193051;TFCP2:0.325145999394;ZBTB6:0.320982714858;ATF4:0.301414631143;BPTF:0.285094427151;BACH2:0.283809006818;PRRX1,2:0.279377514198;FOXN1:0.278769580562;NFE2:0.235776529708;CEBPA,B_DDIT3:0.232185356457;NKX2-2,8:0.225958102667;ZNF143:0.220012562364;YY1:0.217703918821;MED-1{core}:0.208738754424;NRF1:0.188703337504;CREB1:0.182655663607;TFDP1:0.171454169469;FOXO1,3,4:0.168842066348;TBP:0.163126852772;HOX{A4,D4}:0.15615012001;XCPE1{core}:0.152290068876;CDC5L:0.146406391441;FOS_FOS{B,L1}_JUN{B,D}:0.141875041895;NR6A1:0.114228276032;PAX2:0.0964528090268;IRF1,2:0.0903120999186;PAX3,7:0.0882677120454;FOX{I1,J2}:0.0853251796542;MYFfamily:0.0577598323931;FOXP1:0.0549887378471;POU5F1:0.0547695530526;TFAP2B:0.0455424084342;ATF5_CREB3:0.0373250625667;EGR1..3:-0.0145263370342;NHLH1,2:-0.0168866048851;FOSL2:-0.0229011528817;ELF1,2,4:-0.0234574105545;HOX{A6,A7,B6,B7}:-0.0252392169528;ZFP161:-0.0269000790492;RUNX1..3:-0.0342404406179;MYB:-0.0442559287272;SOX5:-0.0556583686567;NKX2-3_NKX2-5:-0.065357343456;HIC1:-0.0662745555861;DMAP1_NCOR{1,2}_SMARC:-0.0743824111874;ZBTB16:-0.105497654958;PAX5:-0.106985185573;FOX{D1,D2}:-0.165088909806;ATF2:-0.170161349937;STAT5{A,B}:-0.171193690459;CRX:-0.172400373087;STAT2,4,6:-0.185084828527;RBPJ:-0.1871488568;SOX2:-0.191781294862;DBP:-0.202749547152;ZNF423:-0.214565884632;LEF1_TCF7_TCF7L1,2:-0.219635181035;FOXA2:-0.23344586566;CDX1,2,4:-0.236374171523;ONECUT1,2:-0.252857285017;HNF1A:-0.270863996401;SREBF1,2:-0.278670628326;T:-0.295642612075;SPI1:-0.309999730798;ETS1,2:-0.329812104847;AR:-0.368305844938;E2F1..5:-0.377085652942;bHLH_family:-0.384149446202;PAX4:-0.400804561161;HNF4A_NR2F1,2:-0.401143165021;TGIF1:-0.406514759534;NFKB1_REL_RELA:-0.416600838245;POU6F1:-0.422799555282;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.445065806144;JUN:-0.445721835941;RFX2..5_RFXANK_RFXAP:-0.455922960362;NFY{A,B,C}:-0.507575466765;ADNP_IRX_SIX_ZHX:-0.526759168976;MTF1:-0.534523742978;PAX1,9:-0.538071899797;PITX1..3:-0.542405441767;IRF7:-0.550645730106;REST:-0.561352200627;CUX2:-0.580127235103;LHX3,4:-0.595841564151;FOXM1:-0.61005716202;POU2F1..3:-0.616329034125;SPIB:-0.652895096305;PAX6:-0.734142724944;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.744456339465;ALX1:-0.791244864968;ZEB1:-0.850216085956;OCT4_SOX2{dimer}:-0.857425204394;HOXA9_MEIS1:-0.880087620114;SOX{8,9,10}:-0.912275295553;RORA:-0.921498382519;FOXP3:-0.931245785525;SNAI1..3:-0.93210696813;NFIL3:-0.955248535599;FOX{F1,F2,J1}:-0.9814995627;MYOD1:-0.992061106423;GATA6:-1.04602356;NANOG:-1.12349336653;IKZF2:-1.13428658984;NKX6-1,2:-1.1471971591;FOXQ1:-1.16361821229;ESRRA:-1.20368108501;LMO2:-1.20807526543;BREu{core}:-1.27933713864;NR5A1,2:-1.2808048738;PBX1:-1.56827192497;VSX1,2:-2.28761262566
|top_motifs=ALX4:2.26356298456;NKX3-1:2.21007183549;HIF1A:2.11385417952;NR3C1:2.08524813019;XBP1:1.78914129541;EN1,2:1.73421006159;SRF:1.73061653973;GZF1:1.68905069395;ESR1:1.65681213173;RXRA_VDR{dimer}:1.64686137249;NKX3-2:1.58118801103;TEAD1:1.57990303629;FOXL1:1.51538294664;HBP1_HMGB_SSRP1_UBTF:1.46596241031;ZNF238:1.44512642455;UFEwm:1.43164407323;GATA4:1.42354236806;PRDM1:1.39175439524;HMGA1,2:1.35244756761;HMX1:1.34921360841;MYBL2:1.34554130182;KLF4:1.32933089054;GTF2A1,2:1.30455208687;HSF1,2:1.29353908286;RXR{A,B,G}:1.27607028207;SOX17:1.24973650547;MZF1:1.21258628505;AHR_ARNT_ARNT2:1.13843627357;EBF1:1.07958316697;HOX{A5,B5}:1.06877827186;MAFB:1.03099689116;GFI1B:1.01322719212;ATF6:0.991610458142;MTE{core}:0.99150673975;AIRE:0.978265208792;EVI1:0.975437492384;TOPORS:0.972186287259;NANOG{mouse}:0.967892898817;TP53:0.951846857062;GLI1..3:0.9463881537;GTF2I:0.944420205745;EP300:0.941014812529;MAZ:0.939821449803;TEF:0.938382198837;TAL1_TCF{3,4,12}:0.882659664458;PAX8:0.83964738975;HAND1,2:0.83233313818;SPZ1:0.828057993928;ZNF384:0.825767254333;NFATC1..3:0.785512196209;NKX2-1,4:0.756289222682;TLX1..3_NFIC{dimer}:0.75371235562;RREB1:0.697030157884;ZIC1..3:0.695839078403;NFIX:0.681230938528;NFE2L1:0.669642395213;HLF:0.663396644519;GFI1:0.644444691674;IKZF1:0.637586477164;GCM1,2:0.62928609779;STAT1,3:0.603922249166;ARID5B:0.594456765502;TFAP2{A,C}:0.571795366922;RFX1:0.549483119634;PPARG:0.535356327007;ELK1,4_GABP{A,B1}:0.534981630403;POU3F1..4:0.495291082007;TLX2:0.476703548684;NR1H4:0.470292184256;TBX4,5:0.452006788342;PATZ1:0.432485374914;MEF2{A,B,C,D}:0.413869222303;NFE2L2:0.408645180091;TFAP4:0.40343214868;SMAD1..7,9:0.402906929446;SP1:0.402426697154;ZNF148:0.399076886648;HES1:0.388321057636;PDX1:0.370154615053;FOXD3:0.368464348524;POU1F1:0.365103193051;TFCP2:0.325145999394;ZBTB6:0.320982714858;ATF4:0.301414631143;BPTF:0.285094427151;BACH2:0.283809006818;PRRX1,2:0.279377514198;FOXN1:0.278769580562;NFE2:0.235776529708;CEBPA,B_DDIT3:0.232185356457;NKX2-2,8:0.225958102667;ZNF143:0.220012562364;YY1:0.217703918821;MED-1{core}:0.208738754424;NRF1:0.188703337504;CREB1:0.182655663607;TFDP1:0.171454169469;FOXO1,3,4:0.168842066348;TBP:0.163126852772;HOX{A4,D4}:0.15615012001;XCPE1{core}:0.152290068876;CDC5L:0.146406391441;FOS_FOS{B,L1}_JUN{B,D}:0.141875041895;NR6A1:0.114228276032;PAX2:0.0964528090268;IRF1,2:0.0903120999186;PAX3,7:0.0882677120454;FOX{I1,J2}:0.0853251796542;MYFfamily:0.0577598323931;FOXP1:0.0549887378471;POU5F1:0.0547695530526;TFAP2B:0.0455424084342;ATF5_CREB3:0.0373250625667;EGR1..3:-0.0145263370342;NHLH1,2:-0.0168866048851;FOSL2:-0.0229011528817;ELF1,2,4:-0.0234574105545;HOX{A6,A7,B6,B7}:-0.0252392169528;ZFP161:-0.0269000790492;RUNX1..3:-0.0342404406179;MYB:-0.0442559287272;SOX5:-0.0556583686567;NKX2-3_NKX2-5:-0.065357343456;HIC1:-0.0662745555861;DMAP1_NCOR{1,2}_SMARC:-0.0743824111874;ZBTB16:-0.105497654958;PAX5:-0.106985185573;FOX{D1,D2}:-0.165088909806;ATF2:-0.170161349937;STAT5{A,B}:-0.171193690459;CRX:-0.172400373087;STAT2,4,6:-0.185084828527;RBPJ:-0.1871488568;SOX2:-0.191781294862;DBP:-0.202749547152;ZNF423:-0.214565884632;LEF1_TCF7_TCF7L1,2:-0.219635181035;FOXA2:-0.23344586566;CDX1,2,4:-0.236374171523;ONECUT1,2:-0.252857285017;HNF1A:-0.270863996401;SREBF1,2:-0.278670628326;T:-0.295642612075;SPI1:-0.309999730798;ETS1,2:-0.329812104847;AR:-0.368305844938;E2F1..5:-0.377085652942;bHLH_family:-0.384149446202;PAX4:-0.400804561161;HNF4A_NR2F1,2:-0.401143165021;TGIF1:-0.406514759534;NFKB1_REL_RELA:-0.416600838245;POU6F1:-0.422799555282;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.445065806144;JUN:-0.445721835941;RFX2..5_RFXANK_RFXAP:-0.455922960362;NFY{A,B,C}:-0.507575466765;ADNP_IRX_SIX_ZHX:-0.526759168976;MTF1:-0.534523742978;PAX1,9:-0.538071899797;PITX1..3:-0.542405441767;IRF7:-0.550645730106;REST:-0.561352200627;CUX2:-0.580127235103;LHX3,4:-0.595841564151;FOXM1:-0.61005716202;POU2F1..3:-0.616329034125;SPIB:-0.652895096305;PAX6:-0.734142724944;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.744456339465;ALX1:-0.791244864968;ZEB1:-0.850216085956;OCT4_SOX2{dimer}:-0.857425204394;HOXA9_MEIS1:-0.880087620114;SOX{8,9,10}:-0.912275295553;RORA:-0.921498382519;FOXP3:-0.931245785525;SNAI1..3:-0.93210696813;NFIL3:-0.955248535599;FOX{F1,F2,J1}:-0.9814995627;MYOD1:-0.992061106423;GATA6:-1.04602356;NANOG:-1.12349336653;IKZF2:-1.13428658984;NKX6-1,2:-1.1471971591;FOXQ1:-1.16361821229;ESRRA:-1.20368108501;LMO2:-1.20807526543;BREu{core}:-1.27933713864;NR5A1,2:-1.2808048738;PBX1:-1.56827192497;VSX1,2:-2.28761262566
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14323-155E3;search_select_hide=table117:FF:14323-155E3
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - skin normal, donor1 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12403
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age25 year old
cell typefibroblast
cell lineNA
companyCoriell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005302
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12403 CAGE DRX008037 DRR008909
Accession ID Hg19

Library idBAMCTSS
CNhs12403 DRZ000334 DRZ001719
Accession ID Hg38

Library idBAMCTSS
CNhs12403 DRZ011684 DRZ013069
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0176
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.872
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.156
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.949
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.521
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.16
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0908
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.448
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0996
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.18
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.453
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0996
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.14
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.77
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0415
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0791
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0784
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0996
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.13
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.127
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.18
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.486
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.359
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.02
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.308
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.77
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.001
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12403

Jaspar motifP-value
MA0002.20.105
MA0003.10.991
MA0004.10.0217
MA0006.10.465
MA0007.10.537
MA0009.10.22
MA0014.10.182
MA0017.10.0497
MA0018.20.195
MA0019.10.783
MA0024.10.00152
MA0025.10.0974
MA0027.10.815
MA0028.10.413
MA0029.10.722
MA0030.10.159
MA0031.10.17
MA0035.25.23208e-4
MA0038.10.43
MA0039.20.321
MA0040.10.198
MA0041.10.731
MA0042.10.667
MA0043.10.117
MA0046.10.316
MA0047.20.968
MA0048.10.00634
MA0050.10.577
MA0051.10.145
MA0052.10.108
MA0055.10.303
MA0057.10.676
MA0058.10.00281
MA0059.10.0444
MA0060.12.07666e-4
MA0061.10.0118
MA0062.20.506
MA0065.20.00174
MA0066.10.451
MA0067.10.645
MA0068.10.248
MA0069.10.0413
MA0070.10.65
MA0071.10.154
MA0072.10.438
MA0073.10.72
MA0074.10.612
MA0076.10.0984
MA0077.10.0759
MA0078.10.655
MA0079.20.318
MA0080.21.52063e-7
MA0081.10.0289
MA0083.13.29492e-5
MA0084.10.289
MA0087.10.691
MA0088.10.829
MA0090.12.18488e-5
MA0091.10.824
MA0092.10.869
MA0093.10.0243
MA0099.20.319
MA0100.10.597
MA0101.10.00171
MA0102.20.519
MA0103.17.27761e-6
MA0104.29.43344e-5
MA0105.10.0647
MA0106.10.132
MA0107.10.00158
MA0108.20.0885
MA0111.10.0953
MA0112.20.563
MA0113.10.819
MA0114.10.0171
MA0115.10.189
MA0116.10.874
MA0117.10.365
MA0119.10.901
MA0122.10.474
MA0124.10.0517
MA0125.10.153
MA0131.10.993
MA0135.10.875
MA0136.11.05811e-5
MA0137.20.785
MA0138.20.753
MA0139.10.492
MA0140.10.00497
MA0141.10.0297
MA0142.10.0208
MA0143.10.658
MA0144.10.881
MA0145.10.413
MA0146.10.926
MA0147.10.00395
MA0148.10.347
MA0149.10.0953
MA0150.10.18
MA0152.10.0743
MA0153.10.805
MA0154.10.936
MA0155.10.947
MA0156.10.0431
MA0157.10.206
MA0159.10.436
MA0160.10.00573
MA0162.10.096
MA0163.10.533
MA0164.10.496
MA0258.10.503
MA0259.10.336



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12403

Novel motifP-value
10.082
100.446
1000.376
1010.778
1020.0295
1030.167
1040.385
1050.731
1060.0379
1070.753
1080.868
1090.0982
110.191
1100.854
1110.0895
1120.667
1130.0153
1140.685
1150.861
1160.88
1170.511
1180.687
1190.546
120.869
1200.498
1210.803
1220.0479
1230.00901
1240.0943
1250.706
1260.179
1270.763
1280.131
1290.328
130.412
1300.664
1310.687
1320.627
1330.616
1340.828
1350.538
1360.177
1370.45
1380.391
1390.351
140.46
1400.923
1410.538
1420.931
1430.316
1440.992
1450.92
1460.187
1470.0783
1480.0606
1490.118
150.0233
1500.617
1510.237
1520.535
1530.615
1540.523
1550.00826
1560.505
1570.99
1580.248
1590.232
160.91
1600.364
1610.353
1620.562
1630.81
1640.459
1650.514
1660.0292
1670.226
1680.893
1690.281
170.799
180.624
190.182
20.7
200.559
210.158
220.895
230.587
240.171
250.109
260.818
270.398
280.672
290.863
30.673
300.502
310.671
323.08185e-7
330.402
340.782
350.637
360.0347
370.64
380.362
390.486
40.231
400.0246
410.453
420.268
430.443
440.157
450.463
460.493
470.134
480.413
490.0529
50.807
500.525
510.448
520.762
530.358
540.557
550.409
560.297
570.448
580.137
590.925
60.612
600.199
610.171
620.144
630.665
640.121
650.651
660.225
670.902
680.562
690.351
70.0955
700.359
710.398
720.36
730.315
740.38
750.353
760.896
770.53
780.0292
790.00724
80.0954
800.836
810.412
820.798
830.0436
840.124
850.433
860.606
870.393
880.645
890.845
90.838
900.159
910.996
920.711
930.642
940.716
950.343
960.944
970.521
980.0593
990.156



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12403


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000406 (nuclear fraction sample)
0000668 (human Fibroblast - skin normal, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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