FF:11791-124B9: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13202
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	11
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005479

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13202		CAGE		DRX008187		DRR009059

Accession ID Hg19

Library id		BAM		CTSS
CNhs13202		DRZ000484		DRZ001869

Accession ID Hg38

Library id		BAM		CTSS
CNhs13202		DRZ011834		DRZ013219

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.111
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.137
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.325
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.0553
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.111
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.334
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.237
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.832
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0691
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0826
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0859
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.111
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.728
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.497
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.513
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.555
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.199
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.629
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.438
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.111
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.215
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.111
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.199
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.976
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.89
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13202

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.13302e-9
MA0003.1	MA0003.1	0.705
MA0004.1	MA0004.1	0.822
MA0006.1	MA0006.1	0.445
MA0007.1	MA0007.1	0.678
MA0009.1	MA0009.1	0.283
MA0014.1	MA0014.1	0.939
MA0017.1	MA0017.1	0.0534
MA0018.2	MA0018.2	0.341
MA0019.1	MA0019.1	0.729
MA0024.1	MA0024.1	0.253
MA0025.1	MA0025.1	0.192
MA0027.1	MA0027.1	0.663
MA0028.1	MA0028.1	3.63396e-4
MA0029.1	MA0029.1	0.375
MA0030.1	MA0030.1	0.593
MA0031.1	MA0031.1	0.296
MA0035.2	MA0035.2	0.044
MA0038.1	MA0038.1	0.15
MA0039.2	MA0039.2	0.54
MA0040.1	MA0040.1	0.155
MA0041.1	MA0041.1	0.135
MA0042.1	MA0042.1	0.487
MA0043.1	MA0043.1	0.0218
MA0046.1	MA0046.1	0.194
MA0047.2	MA0047.2	0.373
MA0048.1	MA0048.1	0.706
MA0050.1	MA0050.1	1.90419e-6
MA0051.1	MA0051.1	0.0131
MA0052.1	MA0052.1	0.0032
MA0055.1	MA0055.1	0.936
MA0057.1	MA0057.1	0.842
MA0058.1	MA0058.1	0.935
MA0059.1	MA0059.1	0.367
MA0060.1	MA0060.1	0.847
MA0061.1	MA0061.1	0.0141
MA0062.2	MA0062.2	3.05954e-12
MA0065.2	MA0065.2	0.0209
MA0066.1	MA0066.1	0.116
MA0067.1	MA0067.1	0.767
MA0068.1	MA0068.1	0.11
MA0069.1	MA0069.1	0.511
MA0070.1	MA0070.1	0.647
MA0071.1	MA0071.1	0.444
MA0072.1	MA0072.1	0.839
MA0073.1	MA0073.1	0.797
MA0074.1	MA0074.1	0.726
MA0076.1	MA0076.1	6.13786e-6
MA0077.1	MA0077.1	0.0636
MA0078.1	MA0078.1	0.578
MA0079.2	MA0079.2	0.34
MA0080.2	MA0080.2	1.04803e-13
MA0081.1	MA0081.1	0.0235
MA0083.1	MA0083.1	0.00923
MA0084.1	MA0084.1	0.805
MA0087.1	MA0087.1	0.236
MA0088.1	MA0088.1	0.0457
MA0090.1	MA0090.1	7.31704e-4
MA0091.1	MA0091.1	0.649
MA0092.1	MA0092.1	0.576
MA0093.1	MA0093.1	0.767
MA0099.2	MA0099.2	1.41911e-4
MA0100.1	MA0100.1	0.135
MA0101.1	MA0101.1	0.773
MA0102.2	MA0102.2	0.367
MA0103.1	MA0103.1	0.0666
MA0104.2	MA0104.2	0.185
MA0105.1	MA0105.1	1.61814e-6
MA0106.1	MA0106.1	0.979
MA0107.1	MA0107.1	0.953
MA0108.2	MA0108.2	7.41042e-15
MA0111.1	MA0111.1	0.088
MA0112.2	MA0112.2	0.0383
MA0113.1	MA0113.1	0.833
MA0114.1	MA0114.1	0.159
MA0115.1	MA0115.1	0.447
MA0116.1	MA0116.1	1.73536e-5
MA0117.1	MA0117.1	0.835
MA0119.1	MA0119.1	0.722
MA0122.1	MA0122.1	0.9
MA0124.1	MA0124.1	0.63
MA0125.1	MA0125.1	0.363
MA0131.1	MA0131.1	0.462
MA0135.1	MA0135.1	0.0966
MA0136.1	MA0136.1	1.08459e-24
MA0137.2	MA0137.2	0.193
MA0138.2	MA0138.2	0.635
MA0139.1	MA0139.1	0.0184
MA0140.1	MA0140.1	0.0702
MA0141.1	MA0141.1	0.597
MA0142.1	MA0142.1	0.461
MA0143.1	MA0143.1	0.204
MA0144.1	MA0144.1	0.291
MA0145.1	MA0145.1	0.748
MA0146.1	MA0146.1	0.302
MA0147.1	MA0147.1	0.151
MA0148.1	MA0148.1	0.847
MA0149.1	MA0149.1	0.0909
MA0150.1	MA0150.1	0.122
MA0152.1	MA0152.1	0.0154
MA0153.1	MA0153.1	0.552
MA0154.1	MA0154.1	0.00541
MA0155.1	MA0155.1	0.793
MA0156.1	MA0156.1	3.14632e-21
MA0157.1	MA0157.1	0.066
MA0159.1	MA0159.1	0.209
MA0160.1	MA0160.1	0.305
MA0162.1	MA0162.1	0.725
MA0163.1	MA0163.1	1.27238e-14
MA0164.1	MA0164.1	0.794
MA0258.1	MA0258.1	0.0207
MA0259.1	MA0259.1	0.444

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13202

Novel motif	Logo	P-value
1	1	0.117
10	10	0.0102
100	100	0.838
101	101	0.141
102	102	0.64
103	103	0.131
104	104	0.582
105	105	0.114
106	106	0.382
107	107	0.552
108	108	0.674
109	109	0.0662
11	11	0.0401
110	110	0.348
111	111	0.259
112	112	0.163
113	113	0.532
114	114	0.165
115	115	0.0757
116	116	0.982
117	117	0.0112
118	118	0.472
119	119	0.494
12	12	0.648
120	120	0.511
121	121	0.859
122	122	0.366
123	123	0.00547
124	124	0.0771
125	125	0.886
126	126	0.47
127	127	0.344
128	128	0.538
129	129	0.115
13	13	0.458
130	130	0.951
131	131	0.517
132	132	0.743
133	133	0.244
134	134	0.594
135	135	0.613
136	136	0.772
137	137	0.0878
138	138	0.201
139	139	0.279
14	14	0.59
140	140	0.0309
141	141	0.547
142	142	0.683
143	143	8.27297e-4
144	144	0.622
145	145	0.222
146	146	0.383
147	147	0.091
148	148	0.0356
149	149	0.96
15	15	0.108
150	150	0.646
151	151	0.512
152	152	0.319
153	153	0.788
154	154	0.778
155	155	0.0196
156	156	0.565
157	157	0.196
158	158	0.0732
159	159	0.73
16	16	0.545
160	160	0.249
161	161	0.145
162	162	0.126
163	163	0.907
164	164	0.147
165	165	0.13
166	166	0.659
167	167	0.138
168	168	0.223
169	169	0.368
17	17	0.79
18	18	0.569
19	19	0.767
2	2	0.791
20	20	0.963
21	21	0.271
22	22	0.877
23	23	0.732
24	24	0.712
25	25	0.0673
26	26	0.149
27	27	0.0832
28	28	0.577
29	29	0.0178
3	3	0.0343
30	30	0.299
31	31	0.897
32	32	0.552
33	33	0.334
34	34	0.903
35	35	0.104
36	36	0.0174
37	37	0.212
38	38	0.597
39	39	0.274
4	4	0.607
40	40	0.32
41	41	0.402
42	42	0.0618
43	43	0.314
44	44	0.311
45	45	0.66
46	46	0.0483
47	47	0.0106
48	48	0.056
49	49	0.118
5	5	0.417
50	50	0.866
51	51	0.479
52	52	0.397
53	53	0.29
54	54	0.699
55	55	0.537
56	56	0.408
57	57	0.264
58	58	0.0827
59	59	0.264
6	6	0.795
60	60	0.38
61	61	0.14
62	62	0.0263
63	63	0.512
64	64	0.112
65	65	0.733
66	66	0.943
67	67	0.743
68	68	0.75
69	69	0.815
7	7	0.161
70	70	0.0559
71	71	0.0198
72	72	0.0963
73	73	0.69
74	74	0.689
75	75	0.0156
76	76	0.543
77	77	0.648
78	78	0.026
79	79	0.239
8	8	0.383
80	80	0.0261
81	81	0.436
82	82	0.0597
83	83	0.505
84	84	0.278
85	85	0.829
86	86	0.267
87	87	0.897
88	88	0.898
89	89	0.73
9	9	0.68
90	90	0.0148
91	91	0.398
92	92	0.289
93	93	0.267
94	94	0.0538
95	95	0.0621
96	96	0.0771
97	97	0.341
98	98	0.316
99	99	0.27

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13202

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005479
+|accession_numbers=CAGE;DRX008187;DRR009059;DRZ000484;DRZ001869;DRZ011834;DRZ013219
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Previously: CD4-positiveCD25-CD45RA+ memory conventional T cells expanded, donor1. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
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DB2;;chr7:99097863..99097936,-!p1@ZNF394!0.36!20.29!ZNF394;;chr11:67007477..67007493,+!p2@KDM2A!0.36!17.10!KDM2A;;chr2:113033164..113033219,+!p1@ZC3H6!0.36!17.10!ZC3H6;;chr19:37064145..37064216,-!p1@ZNF529!0.36!17.10!ZNF529;;chrX:70503529..70503549,+!p2@NONO!0.36!10.43!NONO;;chr19:19843900..19843928,-!p1@ZNF14!0.36!9.85!ZNF14;;chr6:27440837..27440912,-!p1@ZNF184!0.36!8.98!ZNF184;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.36!8.11!ZNF816;;chr1:40997285..40997352,+!p1@ZNF684!0.36!6.67!ZNF684;;chr19:19496577..19496619,+!p5@GATAD2A!0.36!6.38!GATAD2A;;chr9:2017063..2017144,+!p4@SMARCA2!0.36!5.80!SMARCA2;;chr14:64971288..64971316,-!p2@ZBTB25!0.36!5.80!ZBTB25;;chr13:20357110..20357121,-!p2@PSPC1!0.36!4.93!PSPC1;;chr1:78444714..78444725,-!p3@FUBP1!0.36!4.93!FUBP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.36!4.06!CARHSP1;;chr19:20150029..20150078,-!p3@ZNF682!0.36!2.90!ZNF682;;chr11:130184644..130184662,-!p5@ZBTB44!0.36!2.61!ZBTB44;;chr11:67007535..67007546,+!p7@KDM2A!0.36!2.32!KDM2A;;chr14:69262947..69262986,-!p3@ZFP36L1!0.36!1.74!ZFP36L1;;chr6:135502501..135502546,+!p1@MYB!0.36!1.74!MYB;;chr8:71316403..71316427,-!p6@NCOA2!0.36!1.74!NCOA2;;chr19:4067174..4067200,-!p9@ZBTB7A!0.36!1.74!ZBTB7A;;chr17:47866034..47866060,+!p1@KAT7!0.35!103.75!KAT7;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.35!90.13!TBX19;;chr20:47894569..47894799,-!p1@ZNFX1!0.35!53.90!ZNFX1;;chr7:152133059..152133102,-!p1@MLL3!0.35!31.88!MLL3;;chr10:38299546..38299686,+!p1@ZNF33A!0.35!28.98!ZNF33A;;chr11:9482551..9482580,+!p1@ZNF143!0.35!25.79!ZNF143;;chr1:22778337..22778356,+!p1@ZBTB40!0.35!24.34!ZBTB40;;chr19:53193731..53193767,-!p1@ZNF83!0.35!17.68!ZNF83;;chr9:99540335..99540388,-!p1@ZNF510!0.35!14.49!ZNF510;;chrX:131623044..131623089,-!p1@MBNL3!0.35!7.82!MBNL3;;chr3:114866084..114866118,-!p2@ZBTB20!0.35!6.67!ZBTB20;;chr19:37096194..37096235,+!p1@ZNF382!0.35!5.80!ZNF382;;chr7:64254834..64254854,+!p2@ZNF138!0.35!2.90!ZNF138;;chr16:68119440..68119480,+!p4@NFATC3!0.35!2.61!NFATC3;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.35!2.32!ZNF816;;chr7:92076714..92076729,+!p2@GATAD1!0.35!1.74!GATAD1;;chr19:12721725..12721758,+!p1@ZNF791!0.34!34.20!ZNF791;;chr12:95467267..95467350,-!p1@NR2C1!0.34!23.18!NR2C1;;chr12:498415..498492,-!p1@KDM5A!0.34!21.45!KDM5A;;chr16:29819403..29819442,+!p5@MAZ!0.34!15.94!MAZ;;chr19:45004556..45004581,-!p1@ZNF180!0.34!11.30!ZNF180;;chr3:23986824..23986848,+!p2@NR1D2!0.34!10.43!NR1D2;;chr16:29817433..29817468,+!p8@MAZ!0.34!5.51!MAZ;;chr19:40502938..40502987,+!p1@ZNF546!0.34!4.35!ZNF546;;chr7:21467642..21467671,+!p2@SP4!0.34!3.77!SP4;;chr19:36980455..36980469,-!p2@ZNF566!0.34!3.48!ZNF566;;chr16:3285119..3285133,-!p2@ZNF200!0.34!3.19!ZNF200;;chr11:615570..615721,-!p2@IRF7!0.34!3.19!IRF7;;chr3:101546827..101546847,+!p2@NFKBIZ!0.34!2.03!NFKBIZ;;chr19:49140595..49140607,-!p3@DBP!0.34!2.03!DBP;;chr10:21962268..21962272,+!p6@MLLT10!0.34!1.74!MLLT10;;chr7:6746529..6746591,-!p1@ZNF12!0.33!26.08!ZNF12;;chr19:52531600..52531685,-!p1@ZNF614!0.33!17.39!ZNF614;;chr10:21823128..21823216,+!p1@MLLT10!0.33!17.10!MLLT10;;chr4:38665769..38665801,+!p2@KLF3!0.33!16.81!KLF3;;chr20:25677465..25677497,-!p1@ZNF337!0.33!11.30!ZNF337;;chr9:95640300..95640345,-!p1@ZNF484!0.33!10.14!ZNF484;;chr2:178128199..178128245,-!p3@NFE2L2!0.33!9.85!NFE2L2;;chr10:97889784..97889827,+!p1@ZNF518A!0.33!8.69!ZNF518A;;chr11:65687362..65687436,+!p3@DRAP1!0.33!8.11!DRAP1;;chr19:47615477..47615491,-!p3@ZC3H4!0.33!7.82!ZC3H4;;chr19:57752022..57752108,+!p1@ZNF805!0.33!7.82!ZNF805;;chr9:73028332..73028385,-!p3@KLF9!0.33!6.09!KLF9;;chr19:44598534..44598559,+!p2@ZNF224!0.33!5.22!ZNF224;;chr19:12721790..12721810,+!p2@ZNF791!0.33!4.64!ZNF791;;chrX:129244885..129244926,-!p3@ELF4!0.33!4.06!ELF4;;chr19:53970970..53971021,+!p1@ZNF813!0.33!3.77!ZNF813;;chr20:52210368..52210384,-!p1@ZNF217!0.33!2.90!ZNF217;;chr7:128577972..128578047,+!p1@IRF5!0.33!2.32!IRF5;;chr17:46621311..46621332,-!p8@HOXB2!0.33!1.74!HOXB2;;chr14:99737996..99738007,-!p5@BCL11B!0.33!1.16!BCL11B;;chr16:29819579..29819591,+!p32@MAZ!0.33!1.16!MAZ;;chr19:16435735..16435773,+!p4@KLF2!0.33!1.16!KLF2;;chr19:19729458..19729469,-!p2@PBX4!0.33!1.16!PBX4;;chr19:36204309..36204335,+!p1@ZBTB32!0.33!1.16!ZBTB32;;chr19:37096126..37096137,-!p4@ZNF529!0.33!1.16!ZNF529;;chr6:152011695..152011709,+!p6@ESR1!0.33!1.16!ESR1;;chr9:117138946..117138968,-!p4@AKNA!0.33!1.16!AKNA;;chr19:54058073..54058088,+!p1@ZNF331!0.33!1.16!ZNF331;;chr1:14057463..14057496,+!p4@PRDM2!0.33!1.16!PRDM2;;chr1:211432862..211432871,+!p10@RCOR3!0.33!1.16!RCOR3;;chr1:23857674..23857685,-!p3@E2F2!0.33!1.16!E2F2;;chr1:25291678..25291685,-!p8@RUNX3!0.33!1.16!RUNX3;;chr10:31607335..31607354,+!p5@ZEB1!0.33!1.16!ZEB1;;chr10:8097295..8097320,+!p6@GATA3!0.33!1.16!GATA3;;chr10:8097321..8097348,+!p4@GATA3!0.33!1.16!GATA3;;chr11:128392258..128392264,-!p7@ETS1!0.33!1.16!ETS1;;chr11:62369084..62369093,-!p9@MTA2!0.33!1.16!MTA2;;chr12:6782377..6782382,-!p15@ZNF384!0.33!1.16!ZNF384;;chr13:74708208..74708220,-!p12@KLF12!0.33!1.16!KLF12;;chr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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011452,FF:11791-124B9
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11791-124B9
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13202
+|library_id_phase_based=2:CNhs13202
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11791
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11791
 |name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1
 |namespace=
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13202,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=2.8764
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 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 99: @@
 |sample_tissue=blood
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11791-124B9;search_select_hide=table117:FF:11791-124B9
 }}

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FF:11791-124B9: Difference between revisions

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Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0