FF:14326-155E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062 | |DRA_sample_Accession=CAGE@SAMD00005054 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008039;DRR008911;DRZ000336;DRZ001721;DRZ011686;DRZ013071 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000251,FF:0000406,FF:0000670 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.39!243.35!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.92!217.60!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.75!55.28!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!50.99!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.66!72.95!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.83!MEIS2;;chr5:72744594..72744609,-!p1@FOXD1!1.42!113.09!FOXD1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.24!HAND2;;chr15:37392616..37392638,-!p2@MEIS2!1.36!66.64!MEIS2;;chr2:176969097..176969109,+!p3@HOXD11!1.34!20.70!HOXD11;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.70!KDM5D;;chr15:37392703..37392717,-!p8@MEIS2!1.33!28.78!MEIS2;;chr15:37392724..37392757,-!p1@MEIS2!1.27!79.26!MEIS2;;chr2:19558373..19558392,-!p1@OSR1!1.27!47.96!OSR1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.27!17.67!RUNX1T1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.19!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!1.23!15.90!HOXA3;;chr21:36260773..36260804,-!p7@RUNX1!1.22!21.20!RUNX1;;chr5:321810..321877,+!p1@AHRR!1.21!48.47!AHRR;;chr1:170632285..170632309,+!p1@PRRX1!1.20!16.66!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.89!IRX2;;chr19:13134772..13134822,+!p2@NFIX!1.19!21.20!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!1.18!188.82!ARID5B;;chr9:132427972..132428056,+!p1@PRRX2!1.18!18.43!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.14!EMX2;;chr2:102091566..102091581,-!p1@RFX8!1.17!13.88!RFX8;;chr2:239756671..239756732,+!p1@TWIST2!1.16!43.17!TWIST2;;chr2:176969124..176969155,+!p5@HOXD11!1.15!13.13!HOXD11;;chr19:45971246..45971265,+!p1@FOSB!1.11!218.36!FOSB;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.36!HOXC5;;chr14:24837368..24837401,+!p1@NFATC4!1.07!25.75!NFATC4;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.03!AEBP1;;chr15:37392576..37392589,-!p12@MEIS2!1.06!12.87!MEIS2;;chr19:47523058..47523114,+!p1@NPAS1!1.05!10.35!NPAS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!52.76!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!16.91!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.04!9.84!ZIC1;;chr15:37390850..37390909,-!p3@MEIS2!1.03!19.44!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.03!10.35!GLIS1;;chr1:170633348..170633399,+!p2@PRRX1!1.02!13.13!PRRX1;;chr15:37390482..37390572,-!p7@MEIS2!1.02!13.13!MEIS2;;chr2:177001290..177001315,+!p1@HOXD3!1.02!9.59!HOXD3;;chr3:147111231..147111281,+!p3@ZIC1!1.02!9.59!ZIC1;;chr12:115121962..115121987,-!p1@TBX3!1.01!79.26!TBX3;;chr2:239756739..239756755,+!p2@TWIST2!1.01!16.16!TWIST2;;chr11:46316699..46316719,+!p10@CREB3L1!1.00!9.09!CREB3L1;;chr12:114843940..114843955,-!p2@TBX5!1.00!9.09!TBX5;;chr2:200322654..200322707,-!p2@SATB2!0.99!12.87!SATB2;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.36!NFATC2;;chr15:37392593..37392607,-!p13@MEIS2!0.99!10.60!MEIS2;;chr1:197886421..197886432,+!p2@LHX9!0.99!8.84!LHX9;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.84!TBX5;;chr14:61116183..61116208,-!p1@SIX1!0.98!33.07!SIX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!15.15!CREB3L2;;chr5:158527139..158527161,-!p5@EBF1!0.97!8.33!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.33!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.33!ZFY;;chr10:114710244..114710257,+!p3@TCF7L2!0.96!22.47!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.96!15.15!AEBP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.35!TFAP2C;;chr5:3595977..3595999,+!p1@IRX1!0.96!8.08!IRX1;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.08!HOXD11;;chr6:19837592..19837621,+!p1@ID4!0.95!49.48!ID4;;chr10:63809077..63809089,+!p5@ARID5B!0.95!17.42!ARID5B;;chr7:27213893..27213954,-!p1@HOXA10!0.95!7.83!HOXA10;;chr6:144329384..144329405,-!p1@PLAGL1!0.94!92.39!PLAGL1;;chr14:62162258..62162269,+!p2@HIF1A!0.93!75.73!HIF1A;;chr10:63661437..63661465,+!p2@ARID5B!0.92!145.15!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.92!33.57!ZBTB20;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.38!TBX18;;chr15:37390374..37390422,-!p9@MEIS2!0.92!9.09!MEIS2;;chr2:176969179..176969226,+!p2@HOXD11!0.92!7.32!HOXD11;;chr5:158526917..158526932,-!p1@EBF1!0.91!18.43!EBF1;;chr5:158526459..158526481,-!p2@EBF1!0.91!9.59!EBF1;;chr6:134210243..134210257,+!p1@TCF21!0.91!7.07!TCF21;;chr10:119302232..119302265,+!p1@EMX2!0.91!7.07!EMX2;;chr10:28034739..28034756,-!p1@MKX!0.91!7.07!MKX;;chr12:54402745..54402788,+!p1@HOXC8!0.91!7.07!HOXC8;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.32!HMGA2;;chr8:67525443..67525459,-!p2@MYBL1!0.90!10.60!MYBL1;;chr12:53614115..53614154,-!p1@RARG!0.89!37.61!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.04!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.89!18.93!GLI3;;chr6:100912785..100912822,-!p1@SIM1!0.89!6.82!SIM1;;chr11:65687222..65687240,+!p7@DRAP1!0.88!8.58!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.56!HAND2;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.95!SMARCD3;;chr1:200379104..200379128,-!p2@ZNF281!0.87!16.41!ZNF281;;chr1:197886665..197886732,+!p3@LHX9!0.86!6.31!LHX9;;chr7:27224842..27224872,-!p1@HOXA11!0.86!6.31!HOXA11;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.10!PAWR;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.59!ZBTB38;;chr3:21792585..21792625,-!p2@ZNF385D!0.85!6.82!ZNF385D;;chr2:102091144..102091183,-!p2@RFX8!0.85!6.06!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.06!HOXA9;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.96!NCOR2;;chr6:10412600..10412637,-!p1@TFAP2A!0.84!10.10!TFAP2A;;chr14:62162285..62162296,+!p3@HIF1A!0.83!32.31!HIF1A;;chr21:36259445..36259519,-!p4@RUNX1!0.83!16.91!RUNX1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.82!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.56!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.82!5.55!EMX2;;chr8:93115274..93115323,-!p4@RUNX1T1!0.82!5.55!RUNX1T1;;chr1:119530857..119530884,-!p4@TBX15!0.82!5.55!TBX15;;chr2:121493425..121493474,+!p1@GLI2!0.81!12.62!GLI2;;chr16:54964740..54964789,+!p1@IRX5!0.81!8.08!IRX5;;chr2:208031943..208031978,-!p5@KLF7!0.81!7.57!KLF7;;chr9:16870659..16870675,-!p2@BNC2!0.80!6.56!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.30!EBF1;;chr6:85474198..85474212,-!p3@TBX18!0.80!5.30!TBX18;;chrX:128657457..128657475,-!p1@SMARCA1!0.79!64.37!SMARCA1;;chr1:158979792..158979814,+!p2@IFI16!0.79!54.02!IFI16;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.05!ARID5B;;chr3:71630980..71631110,-!p3@FOXP1!0.79!19.18!FOXP1;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.89!HMGA2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.79!11.36!SMARCAD1;;chr15:37392094..37392116,-!p6@MEIS2!0.79!6.56!MEIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.63!TWIST1;;chr10:70320074..70320106,+!p1@TET1!0.78!10.60!TET1;;chr7:27224795..27224840,-!p2@HOXA11!0.78!5.05!HOXA11;;chr8:106330656..106330684,+!p1@ZFPM2!0.77!13.88!ZFPM2;;chr15:37391271..37391376,-!p5@MEIS2!0.77!9.59!MEIS2;;chr5:43067636..43067674,+!p6@ZNF131!0.77!6.82!ZNF131;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.56!TEAD1;;chr3:157823517..157823562,-!p1@SHOX2!0.77!5.30!SHOX2;;chr10:63809134..63809145,+!p6@ARID5B!0.76!11.86!ARID5B;;chr18:56532100..56532130,+!p1@ZNF532!0.76!9.34!ZNF532;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.31!MEIS2;;chr2:176973498..176973524,+!p1@HOXD10!0.76!4.80!HOXD10;;chr3:138665969..138665993,-!p2@FOXL2!0.76!4.80!FOXL2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.76!4.80!RUNX1T1;;chr14:62162224..62162254,+!p1@HIF1A!0.75!745.94!HIF1A;;chr11:65686802..65686818,+!p6@DRAP1!0.75!8.58!DRAP1;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.08!GLI2;;chr21:36260295..36260310,-!p3@RUNX1!0.75!7.83!RUNX1;;chr3:128206762..128206781,-!p2@GATA2!0.74!31.05!GATA2;;chr5:72744445..72744466,-!p2@FOXD1!0.74!7.83!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.05!PRRX1;;chr1:119530636..119530653,-!p2@TBX15!0.74!4.54!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.74!4.54!TBX15;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.54!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.74!4.54!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.54!ZNF668;;chr5:2751785..2751808,-!p2@IRX2!0.74!4.54!IRX2;;chr3:138665937..138665968,-!p1@FOXL2!0.74!4.54!FOXL2;;chr3:42695180..42695201,+!p2@ZBTB47!0.74!4.54!ZBTB47;;chr5:137801160..137801176,+!p1@EGR1!0.73!486.19!EGR1;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.89!IFI16;;chr20:51588873..51588953,+!p1@TSHZ2!0.73!6.06!TSHZ2;;chr3:150126759..150126784,+!p2@TSC22D2!0.72!21.71!TSC22D2;;chr8:99956662..99956684,+!p1@OSR2!0.72!6.82!OSR2;;chr22:19748231..19748317,+!p1@TBX1!0.72!4.29!TBX1;;chr2:102091590..102091601,-!p5@RFX8!0.72!4.29!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.72!4.29!DLX1;;chr2:172967242..172967265,-!p2@DLX2!0.72!4.29!DLX2;;chr13:37494275..37494304,-!p2@SMAD9!0.72!4.29!SMAD9;;chr1:119530493..119530572,-!p1@TBX15!0.72!4.29!TBX15;;chr1:170633194..170633205,+!p18@PRRX1!0.72!4.29!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.68!CREB1;;chr20:30193083..30193098,+!p1@ID1!0.70!371.33!ID1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.70!DRAP1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.70!14.14!ZSCAN23;;chr6:100912752..100912778,-!p2@SIM1!0.70!4.04!SIM1;;chr7:27205106..27205134,-!p2@HOXA9!0.70!4.04!HOXA9;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.04!HOXC5;;chr18:52969674..52969685,-!p24@TCF4!0.70!4.04!TCF4;;chr19:13135386..13135435,+!p4@NFIX!0.70!4.04!NFIX;;chr4:111558135..111558198,-!p2@PITX2!0.70!4.04!PITX2;;chr2:66662281..66662308,+!p1@MEIS1!0.69!14.89!MEIS1;;chr5:72744562..72744573,-!p3@FOXD1!0.69!5.05!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.69!4.54!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.68!529.10!FOS;;chr2:208031542..208031595,-!p2@KLF7!0.68!30.80!KLF7;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.89!DPF3;;chr18:53254566..53254567,-!p8@TCF4!0.68!6.56!TCF4;;chr10:119302508..119302559,+!p5@EMX2!0.68!3.79!EMX2;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.79!HOXC6;;chr2:85981107..85981120,+!p3@ATOH8!0.68!3.79!ATOH8;;chr1:170632723..170632739,+!p8@PRRX1!0.68!3.79!PRRX1;;chr15:37393449..37393528,-!p4@MEIS2!0.67!11.11!MEIS2;;chr19:11909329..11909394,+!p1@ZNF491!0.67!8.33!ZNF491;;chr1:151431811..151431832,-!p3@POGZ!0.67!6.56!POGZ;;chr12:115122005..11512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| |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.39!243.35!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.92!217.60!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.75!55.28!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!50.99!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.66!72.95!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.83!MEIS2;;chr5:72744594..72744609,-!p1@FOXD1!1.42!113.09!FOXD1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.24!HAND2;;chr15:37392616..37392638,-!p2@MEIS2!1.36!66.64!MEIS2;;chr2:176969097..176969109,+!p3@HOXD11!1.34!20.70!HOXD11;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.70!KDM5D;;chr15:37392703..37392717,-!p8@MEIS2!1.33!28.78!MEIS2;;chr15:37392724..37392757,-!p1@MEIS2!1.27!79.26!MEIS2;;chr2:19558373..19558392,-!p1@OSR1!1.27!47.96!OSR1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.27!17.67!RUNX1T1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.19!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!1.23!15.90!HOXA3;;chr21:36260773..36260804,-!p7@RUNX1!1.22!21.20!RUNX1;;chr5:321810..321877,+!p1@AHRR!1.21!48.47!AHRR;;chr1:170632285..170632309,+!p1@PRRX1!1.20!16.66!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.89!IRX2;;chr19:13134772..13134822,+!p2@NFIX!1.19!21.20!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!1.18!188.82!ARID5B;;chr9:132427972..132428056,+!p1@PRRX2!1.18!18.43!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.14!EMX2;;chr2:102091566..102091581,-!p1@RFX8!1.17!13.88!RFX8;;chr2:239756671..239756732,+!p1@TWIST2!1.16!43.17!TWIST2;;chr2:176969124..176969155,+!p5@HOXD11!1.15!13.13!HOXD11;;chr19:45971246..45971265,+!p1@FOSB!1.11!218.36!FOSB;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.36!HOXC5;;chr14:24837368..24837401,+!p1@NFATC4!1.07!25.75!NFATC4;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.03!AEBP1;;chr15:37392576..37392589,-!p12@MEIS2!1.06!12.87!MEIS2;;chr19:47523058..47523114,+!p1@NPAS1!1.05!10.35!NPAS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!52.76!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!16.91!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.04!9.84!ZIC1;;chr15:37390850..37390909,-!p3@MEIS2!1.03!19.44!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.03!10.35!GLIS1;;chr1:170633348..170633399,+!p2@PRRX1!1.02!13.13!PRRX1;;chr15:37390482..37390572,-!p7@MEIS2!1.02!13.13!MEIS2;;chr2:177001290..177001315,+!p1@HOXD3!1.02!9.59!HOXD3;;chr3:147111231..147111281,+!p3@ZIC1!1.02!9.59!ZIC1;;chr12:115121962..115121987,-!p1@TBX3!1.01!79.26!TBX3;;chr2:239756739..239756755,+!p2@TWIST2!1.01!16.16!TWIST2;;chr11:46316699..46316719,+!p10@CREB3L1!1.00!9.09!CREB3L1;;chr12:114843940..114843955,-!p2@TBX5!1.00!9.09!TBX5;;chr2:200322654..200322707,-!p2@SATB2!0.99!12.87!SATB2;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.36!NFATC2;;chr15:37392593..37392607,-!p13@MEIS2!0.99!10.60!MEIS2;;chr1:197886421..197886432,+!p2@LHX9!0.99!8.84!LHX9;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.84!TBX5;;chr14:61116183..61116208,-!p1@SIX1!0.98!33.07!SIX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!15.15!CREB3L2;;chr5:158527139..158527161,-!p5@EBF1!0.97!8.33!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.33!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.33!ZFY;;chr10:114710244..114710257,+!p3@TCF7L2!0.96!22.47!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.96!15.15!AEBP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.35!TFAP2C;;chr5:3595977..3595999,+!p1@IRX1!0.96!8.08!IRX1;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.08!HOXD11;;chr6:19837592..19837621,+!p1@ID4!0.95!49.48!ID4;;chr10:63809077..63809089,+!p5@ARID5B!0.95!17.42!ARID5B;;chr7:27213893..27213954,-!p1@HOXA10!0.95!7.83!HOXA10;;chr6:144329384..144329405,-!p1@PLAGL1!0.94!92.39!PLAGL1;;chr14:62162258..62162269,+!p2@HIF1A!0.93!75.73!HIF1A;;chr10:63661437..63661465,+!p2@ARID5B!0.92!145.15!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.92!33.57!ZBTB20;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.38!TBX18;;chr15:37390374..37390422,-!p9@MEIS2!0.92!9.09!MEIS2;;chr2:176969179..176969226,+!p2@HOXD11!0.92!7.32!HOXD11;;chr5:158526917..158526932,-!p1@EBF1!0.91!18.43!EBF1;;chr5:158526459..158526481,-!p2@EBF1!0.91!9.59!EBF1;;chr6:134210243..134210257,+!p1@TCF21!0.91!7.07!TCF21;;chr10:119302232..119302265,+!p1@EMX2!0.91!7.07!EMX2;;chr10:28034739..28034756,-!p1@MKX!0.91!7.07!MKX;;chr12:54402745..54402788,+!p1@HOXC8!0.91!7.07!HOXC8;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.32!HMGA2;;chr8:67525443..67525459,-!p2@MYBL1!0.90!10.60!MYBL1;;chr12:53614115..53614154,-!p1@RARG!0.89!37.61!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.04!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.89!18.93!GLI3;;chr6:100912785..100912822,-!p1@SIM1!0.89!6.82!SIM1;;chr11:65687222..65687240,+!p7@DRAP1!0.88!8.58!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.56!HAND2;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.95!SMARCD3;;chr1:200379104..200379128,-!p2@ZNF281!0.87!16.41!ZNF281;;chr1:197886665..197886732,+!p3@LHX9!0.86!6.31!LHX9;;chr7:27224842..27224872,-!p1@HOXA11!0.86!6.31!HOXA11;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.10!PAWR;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.59!ZBTB38;;chr3:21792585..21792625,-!p2@ZNF385D!0.85!6.82!ZNF385D;;chr2:102091144..102091183,-!p2@RFX8!0.85!6.06!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.06!HOXA9;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.96!NCOR2;;chr6:10412600..10412637,-!p1@TFAP2A!0.84!10.10!TFAP2A;;chr14:62162285..62162296,+!p3@HIF1A!0.83!32.31!HIF1A;;chr21:36259445..36259519,-!p4@RUNX1!0.83!16.91!RUNX1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.82!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.56!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.82!5.55!EMX2;;chr8:93115274..93115323,-!p4@RUNX1T1!0.82!5.55!RUNX1T1;;chr1:119530857..119530884,-!p4@TBX15!0.82!5.55!TBX15;;chr2:121493425..121493474,+!p1@GLI2!0.81!12.62!GLI2;;chr16:54964740..54964789,+!p1@IRX5!0.81!8.08!IRX5;;chr2:208031943..208031978,-!p5@KLF7!0.81!7.57!KLF7;;chr9:16870659..16870675,-!p2@BNC2!0.80!6.56!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.30!EBF1;;chr6:85474198..85474212,-!p3@TBX18!0.80!5.30!TBX18;;chrX:128657457..128657475,-!p1@SMARCA1!0.79!64.37!SMARCA1;;chr1:158979792..158979814,+!p2@IFI16!0.79!54.02!IFI16;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.05!ARID5B;;chr3:71630980..71631110,-!p3@FOXP1!0.79!19.18!FOXP1;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.89!HMGA2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.79!11.36!SMARCAD1;;chr15:37392094..37392116,-!p6@MEIS2!0.79!6.56!MEIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.63!TWIST1;;chr10:70320074..70320106,+!p1@TET1!0.78!10.60!TET1;;chr7:27224795..27224840,-!p2@HOXA11!0.78!5.05!HOXA11;;chr8:106330656..106330684,+!p1@ZFPM2!0.77!13.88!ZFPM2;;chr15:37391271..37391376,-!p5@MEIS2!0.77!9.59!MEIS2;;chr5:43067636..43067674,+!p6@ZNF131!0.77!6.82!ZNF131;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.56!TEAD1;;chr3:157823517..157823562,-!p1@SHOX2!0.77!5.30!SHOX2;;chr10:63809134..63809145,+!p6@ARID5B!0.76!11.86!ARID5B;;chr18:56532100..56532130,+!p1@ZNF532!0.76!9.34!ZNF532;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.31!MEIS2;;chr2:176973498..176973524,+!p1@HOXD10!0.76!4.80!HOXD10;;chr3:138665969..138665993,-!p2@FOXL2!0.76!4.80!FOXL2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.76!4.80!RUNX1T1;;chr14:62162224..62162254,+!p1@HIF1A!0.75!745.94!HIF1A;;chr11:65686802..65686818,+!p6@DRAP1!0.75!8.58!DRAP1;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.08!GLI2;;chr21:36260295..36260310,-!p3@RUNX1!0.75!7.83!RUNX1;;chr3:128206762..128206781,-!p2@GATA2!0.74!31.05!GATA2;;chr5:72744445..72744466,-!p2@FOXD1!0.74!7.83!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.05!PRRX1;;chr1:119530636..119530653,-!p2@TBX15!0.74!4.54!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.74!4.54!TBX15;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.54!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.74!4.54!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.54!ZNF668;;chr5:2751785..2751808,-!p2@IRX2!0.74!4.54!IRX2;;chr3:138665937..138665968,-!p1@FOXL2!0.74!4.54!FOXL2;;chr3:42695180..42695201,+!p2@ZBTB47!0.74!4.54!ZBTB47;;chr5:137801160..137801176,+!p1@EGR1!0.73!486.19!EGR1;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.89!IFI16;;chr20:51588873..51588953,+!p1@TSHZ2!0.73!6.06!TSHZ2;;chr3:150126759..150126784,+!p2@TSC22D2!0.72!21.71!TSC22D2;;chr8:99956662..99956684,+!p1@OSR2!0.72!6.82!OSR2;;chr22:19748231..19748317,+!p1@TBX1!0.72!4.29!TBX1;;chr2:102091590..102091601,-!p5@RFX8!0.72!4.29!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.72!4.29!DLX1;;chr2:172967242..172967265,-!p2@DLX2!0.72!4.29!DLX2;;chr13:37494275..37494304,-!p2@SMAD9!0.72!4.29!SMAD9;;chr1:119530493..119530572,-!p1@TBX15!0.72!4.29!TBX15;;chr1:170633194..170633205,+!p18@PRRX1!0.72!4.29!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.68!CREB1;;chr20:30193083..30193098,+!p1@ID1!0.70!371.33!ID1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.70!DRAP1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.70!14.14!ZSCAN23;;chr6:100912752..100912778,-!p2@SIM1!0.70!4.04!SIM1;;chr7:27205106..27205134,-!p2@HOXA9!0.70!4.04!HOXA9;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.04!HOXC5;;chr18:52969674..52969685,-!p24@TCF4!0.70!4.04!TCF4;;chr19:13135386..13135435,+!p4@NFIX!0.70!4.04!NFIX;;chr4:111558135..111558198,-!p2@PITX2!0.70!4.04!PITX2;;chr2:66662281..66662308,+!p1@MEIS1!0.69!14.89!MEIS1;;chr5:72744562..72744573,-!p3@FOXD1!0.69!5.05!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.69!4.54!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.68!529.10!FOS;;chr2:208031542..208031595,-!p2@KLF7!0.68!30.80!KLF7;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.89!DPF3;;chr18:53254566..53254567,-!p8@TCF4!0.68!6.56!TCF4;;chr10:119302508..119302559,+!p5@EMX2!0.68!3.79!EMX2;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.79!HOXC6;;chr2:85981107..85981120,+!p3@ATOH8!0.68!3.79!ATOH8;;chr1:170632723..170632739,+!p8@PRRX1!0.68!3.79!PRRX1;;chr15:37393449..37393528,-!p4@MEIS2!0.67!11.11!MEIS2;;chr19:11909329..11909394,+!p1@ZNF491!0.67!8.33!ZNF491;;chr1:151431811..151431832,-!p3@POGZ!0.67!6.56!POGZ;;chr12:115122005..11512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| ||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14326-155E6 | |id=FF:14326-155E6 | ||
|is_a= | |is_a=FF:0000670 | ||
|is_obsolete= | |||
|library_id=CNhs12404 | |||
|library_id_phase_based=2:CNhs12404 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14326 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14326 | |||
|name=Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction) | |name=Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12404,LSID914,release011,COMPLETED | |profile_hcage=CNhs12404,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.55E+08 | ||
|rna_weight_ug=23.65983 | |rna_weight_ug=23.65983 | ||
|sample_age=3 year old child | |sample_age=3 year old child | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 99: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.35502431607;NKX3-1:1.9925040014;HIF1A:1.94656707998;ALX4:1.89628423387;XBP1:1.84545341271;NKX3-2:1.66593480388;GATA4:1.64599337219;SRF:1.56321229382;TOPORS:1.55588556089;TEAD1:1.530584385;KLF4:1.51508675712;MZF1:1.49281950222;GZF1:1.44595172798;NR3C1:1.44210721247;EN1,2:1.43553551646;PRDM1:1.37844894571;HOX{A5,B5}:1.36029033164;EVI1:1.34778702497;UFEwm:1.33884899257;ESR1:1.32811413257;HSF1,2:1.31231577022;AHR_ARNT_ARNT2:1.30683274548;STAT1,3:1.3041400044;GCM1,2:1.2560426208;ZNF384:1.17323849686;RXR{A,B,G}:1.16927186769;GFI1B:1.15556251917;ZNF238:1.12619592776;MYBL2:1.03859996097;HMGA1,2:0.975150804245;PAX8:0.97448978275;GFI1:0.967330294364;SOX17:0.95584796716;NKX2-1,4:0.918880679997;GTF2A1,2:0.880391882773;GTF2I:0.866072032246;NANOG{mouse}:0.86088772349;TEF:0.854176147249;EP300:0.841419794953;ELK1,4_GABP{A,B1}:0.780697791399;BPTF:0.778799553722;TFAP4:0.727131846093;ATF6:0.712857174937;NR1H4:0.705450201206;NFE2L1:0.688467838893;ZIC1..3:0.671942534724;GLI1..3:0.659633166429;RXRA_VDR{dimer}:0.656057666117;RREB1:0.649481268055;FOXL1:0.605113024615;NKX2-2,8:0.600337384474;TAL1_TCF{3,4,12}:0.581953996811;NFIX:0.581537599738;TFDP1:0.563887247275;ARID5B:0.554787619565;ZBTB16:0.52880667689;EBF1:0.517834617184;HMX1:0.516423851104;ZNF143:0.514185997281;YY1:0.508760920533;MAZ:0.504881909942;MYB:0.501707288837;TP53:0.499332886617;TLX1..3_NFIC{dimer}:0.492985754656;E2F1..5:0.491244132146;ZBTB6:0.483646782541;RFX1:0.482037583605;NRF1:0.472148523691;SPZ1:0.44798394209;MTE{core}:0.446853874767;POU3F1..4:0.438907732279;XCPE1{core}:0.426881954258;AIRE:0.423355197772;TFAP2{A,C}:0.419615241092;MAFB:0.409302739446;HLF:0.401858437722;FOXP1:0.380219299126;STAT5{A,B}:0.373712578314;IKZF1:0.37295673821;CDX1,2,4:0.367044639086;MED-1{core}:0.361498691288;PATZ1:0.346598266;FOX{I1,J2}:0.337449331541;FOXN1:0.323074061121;HOX{A4,D4}:0.318557803151;CREB1:0.316022729759;POU1F1:0.305294458159;CEBPA,B_DDIT3:0.282961083172;NFATC1..3:0.250965172777;PRRX1,2:0.248276424839;PAX2:0.244665699935;NFE2:0.230259744347;PPARG:0.226729662022;BACH2:0.222938768293;NFE2L2:0.200504929238;ATF4:0.199336872565;NFY{A,B,C}:0.194226112084;SP1:0.185470617873;FOS_FOS{B,L1}_JUN{B,D}:0.180944918185;ATF5_CREB3:0.170827607475;ZFP161:0.166858334948;PAX3,7:0.14458318836;CRX:0.133954725522;DMAP1_NCOR{1,2}_SMARC:0.0990191265702;ELF1,2,4:0.0922114799794;MEF2{A,B,C,D}:0.0817255890372;PAX5:0.0427991400323;HAND1,2:0.0427799414655;TBX4,5:0.0387787654335;POU5F1:0.0378625832721;MYFfamily:0.00908136591144;TFAP2B:0.00138105419931;TLX2:-0.000589182428062;TBP:-0.0216027578055;RUNX1..3:-0.0303839102891;IRF1,2:-0.0535130996387;PAX4:-0.0605341665815;FOSL2:-0.0661267540537;HIC1:-0.0849915555811;PAX1,9:-0.092686771565;ONECUT1,2:-0.105713647718;EGR1..3:-0.111191274277;POU2F1..3:-0.116105377746;ZNF148:-0.130702448208;RBPJ:-0.141699535619;HES1:-0.148176636026;AR:-0.158416065324;HOXA9_MEIS1:-0.165455122536;SOX5:-0.166645252528;RFX2..5_RFXANK_RFXAP:-0.17199222138;HOX{A6,A7,B6,B7}:-0.184159000626;SMAD1..7,9:-0.201698076912;CDC5L:-0.203338472245;FOX{D1,D2}:-0.206809831944;FOXD3:-0.213154272211;TFCP2:-0.227030940348;FOXO1,3,4:-0.231336024198;PDX1:-0.248024404566;LEF1_TCF7_TCF7L1,2:-0.259268272331;FOXP3:-0.266405243251;NKX2-3_NKX2-5:-0.266972529177;TGIF1:-0.271835250781;LHX3,4:-0.275036055253;ATF2:-0.276358540914;SOX2:-0.283447768064;ZNF423:-0.293003731656;ALX1:-0.302236973861;STAT2,4,6:-0.304651673844;FOXA2:-0.310025882975;PITX1..3:-0.324215380746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.327696024721;SPI1:-0.328292493578;HNF1A:-0.330958568748;DBP:-0.361020643771;ETS1,2:-0.387704636538;T:-0.389002042339;NR6A1:-0.428780312333;NHLH1,2:-0.431366184296;ADNP_IRX_SIX_ZHX:-0.44812095059;SREBF1,2:-0.449923716056;HNF4A_NR2F1,2:-0.452699211179;NKX6-1,2:-0.497353933333;NFKB1_REL_RELA:-0.536956804126;JUN:-0.549937204011;SOX{8,9,10}:-0.552090070811;IRF7:-0.561694283544;POU6F1:-0.565246456941;PBX1:-0.573867981636;SPIB:-0.594354672831;MTF1:-0.663022470932;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.668141303038;REST:-0.668540435395;FOXM1:-0.693665287732;OCT4_SOX2{dimer}:-0.768287606708;CUX2:-0.787696703853;bHLH_family:-0.805182951929;BREu{core}:-0.911512361616;GATA6:-0.957668122404;VSX1,2:-1.02130307977;FOXQ1:-1.02161958712;IKZF2:-1.02538016108;NFIL3:-1.09107055025;ZEB1:-1.13797101555;SNAI1..3:-1.20880205461;LMO2:-1.21582062788;ESRRA:-1.21688493018;NR5A1,2:-1.2261167828;FOX{F1,F2,J1}:-1.24173726343;PAX6:-1.27709341061;NANOG:-1.35414840008;RORA:-1.38718878171;MYOD1:-1.62757638117 | |top_motifs=HBP1_HMGB_SSRP1_UBTF:2.35502431607;NKX3-1:1.9925040014;HIF1A:1.94656707998;ALX4:1.89628423387;XBP1:1.84545341271;NKX3-2:1.66593480388;GATA4:1.64599337219;SRF:1.56321229382;TOPORS:1.55588556089;TEAD1:1.530584385;KLF4:1.51508675712;MZF1:1.49281950222;GZF1:1.44595172798;NR3C1:1.44210721247;EN1,2:1.43553551646;PRDM1:1.37844894571;HOX{A5,B5}:1.36029033164;EVI1:1.34778702497;UFEwm:1.33884899257;ESR1:1.32811413257;HSF1,2:1.31231577022;AHR_ARNT_ARNT2:1.30683274548;STAT1,3:1.3041400044;GCM1,2:1.2560426208;ZNF384:1.17323849686;RXR{A,B,G}:1.16927186769;GFI1B:1.15556251917;ZNF238:1.12619592776;MYBL2:1.03859996097;HMGA1,2:0.975150804245;PAX8:0.97448978275;GFI1:0.967330294364;SOX17:0.95584796716;NKX2-1,4:0.918880679997;GTF2A1,2:0.880391882773;GTF2I:0.866072032246;NANOG{mouse}:0.86088772349;TEF:0.854176147249;EP300:0.841419794953;ELK1,4_GABP{A,B1}:0.780697791399;BPTF:0.778799553722;TFAP4:0.727131846093;ATF6:0.712857174937;NR1H4:0.705450201206;NFE2L1:0.688467838893;ZIC1..3:0.671942534724;GLI1..3:0.659633166429;RXRA_VDR{dimer}:0.656057666117;RREB1:0.649481268055;FOXL1:0.605113024615;NKX2-2,8:0.600337384474;TAL1_TCF{3,4,12}:0.581953996811;NFIX:0.581537599738;TFDP1:0.563887247275;ARID5B:0.554787619565;ZBTB16:0.52880667689;EBF1:0.517834617184;HMX1:0.516423851104;ZNF143:0.514185997281;YY1:0.508760920533;MAZ:0.504881909942;MYB:0.501707288837;TP53:0.499332886617;TLX1..3_NFIC{dimer}:0.492985754656;E2F1..5:0.491244132146;ZBTB6:0.483646782541;RFX1:0.482037583605;NRF1:0.472148523691;SPZ1:0.44798394209;MTE{core}:0.446853874767;POU3F1..4:0.438907732279;XCPE1{core}:0.426881954258;AIRE:0.423355197772;TFAP2{A,C}:0.419615241092;MAFB:0.409302739446;HLF:0.401858437722;FOXP1:0.380219299126;STAT5{A,B}:0.373712578314;IKZF1:0.37295673821;CDX1,2,4:0.367044639086;MED-1{core}:0.361498691288;PATZ1:0.346598266;FOX{I1,J2}:0.337449331541;FOXN1:0.323074061121;HOX{A4,D4}:0.318557803151;CREB1:0.316022729759;POU1F1:0.305294458159;CEBPA,B_DDIT3:0.282961083172;NFATC1..3:0.250965172777;PRRX1,2:0.248276424839;PAX2:0.244665699935;NFE2:0.230259744347;PPARG:0.226729662022;BACH2:0.222938768293;NFE2L2:0.200504929238;ATF4:0.199336872565;NFY{A,B,C}:0.194226112084;SP1:0.185470617873;FOS_FOS{B,L1}_JUN{B,D}:0.180944918185;ATF5_CREB3:0.170827607475;ZFP161:0.166858334948;PAX3,7:0.14458318836;CRX:0.133954725522;DMAP1_NCOR{1,2}_SMARC:0.0990191265702;ELF1,2,4:0.0922114799794;MEF2{A,B,C,D}:0.0817255890372;PAX5:0.0427991400323;HAND1,2:0.0427799414655;TBX4,5:0.0387787654335;POU5F1:0.0378625832721;MYFfamily:0.00908136591144;TFAP2B:0.00138105419931;TLX2:-0.000589182428062;TBP:-0.0216027578055;RUNX1..3:-0.0303839102891;IRF1,2:-0.0535130996387;PAX4:-0.0605341665815;FOSL2:-0.0661267540537;HIC1:-0.0849915555811;PAX1,9:-0.092686771565;ONECUT1,2:-0.105713647718;EGR1..3:-0.111191274277;POU2F1..3:-0.116105377746;ZNF148:-0.130702448208;RBPJ:-0.141699535619;HES1:-0.148176636026;AR:-0.158416065324;HOXA9_MEIS1:-0.165455122536;SOX5:-0.166645252528;RFX2..5_RFXANK_RFXAP:-0.17199222138;HOX{A6,A7,B6,B7}:-0.184159000626;SMAD1..7,9:-0.201698076912;CDC5L:-0.203338472245;FOX{D1,D2}:-0.206809831944;FOXD3:-0.213154272211;TFCP2:-0.227030940348;FOXO1,3,4:-0.231336024198;PDX1:-0.248024404566;LEF1_TCF7_TCF7L1,2:-0.259268272331;FOXP3:-0.266405243251;NKX2-3_NKX2-5:-0.266972529177;TGIF1:-0.271835250781;LHX3,4:-0.275036055253;ATF2:-0.276358540914;SOX2:-0.283447768064;ZNF423:-0.293003731656;ALX1:-0.302236973861;STAT2,4,6:-0.304651673844;FOXA2:-0.310025882975;PITX1..3:-0.324215380746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.327696024721;SPI1:-0.328292493578;HNF1A:-0.330958568748;DBP:-0.361020643771;ETS1,2:-0.387704636538;T:-0.389002042339;NR6A1:-0.428780312333;NHLH1,2:-0.431366184296;ADNP_IRX_SIX_ZHX:-0.44812095059;SREBF1,2:-0.449923716056;HNF4A_NR2F1,2:-0.452699211179;NKX6-1,2:-0.497353933333;NFKB1_REL_RELA:-0.536956804126;JUN:-0.549937204011;SOX{8,9,10}:-0.552090070811;IRF7:-0.561694283544;POU6F1:-0.565246456941;PBX1:-0.573867981636;SPIB:-0.594354672831;MTF1:-0.663022470932;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.668141303038;REST:-0.668540435395;FOXM1:-0.693665287732;OCT4_SOX2{dimer}:-0.768287606708;CUX2:-0.787696703853;bHLH_family:-0.805182951929;BREu{core}:-0.911512361616;GATA6:-0.957668122404;VSX1,2:-1.02130307977;FOXQ1:-1.02161958712;IKZF2:-1.02538016108;NFIL3:-1.09107055025;ZEB1:-1.13797101555;SNAI1..3:-1.20880205461;LMO2:-1.21582062788;ESRRA:-1.21688493018;NR5A1,2:-1.2261167828;FOX{F1,F2,J1}:-1.24173726343;PAX6:-1.27709341061;NANOG:-1.35414840008;RORA:-1.38718878171;MYOD1:-1.62757638117 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14326-155E6;search_select_hide=table117:FF:14326-155E6 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12404 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12404
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12404
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.126 |
| 10 | 10 | 0.714 |
| 100 | 100 | 0.709 |
| 101 | 101 | 0.53 |
| 102 | 102 | 0.164 |
| 103 | 103 | 0.0885 |
| 104 | 104 | 0.519 |
| 105 | 105 | 0.5 |
| 106 | 106 | 0.00716 |
| 107 | 107 | 0.166 |
| 108 | 108 | 0.632 |
| 109 | 109 | 0.0874 |
| 11 | 11 | 0.141 |
| 110 | 110 | 0.865 |
| 111 | 111 | 0.0374 |
| 112 | 112 | 0.453 |
| 113 | 113 | 0.0235 |
| 114 | 114 | 0.526 |
| 115 | 115 | 0.387 |
| 116 | 116 | 0.945 |
| 117 | 117 | 0.834 |
| 118 | 118 | 0.796 |
| 119 | 119 | 0.29 |
| 12 | 12 | 0.826 |
| 120 | 120 | 0.497 |
| 121 | 121 | 0.786 |
| 122 | 122 | 0.0323 |
| 123 | 123 | 0.00968 |
| 124 | 124 | 0.0587 |
| 125 | 125 | 0.584 |
| 126 | 126 | 0.211 |
| 127 | 127 | 0.432 |
| 128 | 128 | 0.0251 |
| 129 | 129 | 0.274 |
| 13 | 13 | 0.611 |
| 130 | 130 | 0.729 |
| 131 | 131 | 0.335 |
| 132 | 132 | 0.784 |
| 133 | 133 | 0.912 |
| 134 | 134 | 0.793 |
| 135 | 135 | 0.766 |
| 136 | 136 | 0.15 |
| 137 | 137 | 0.527 |
| 138 | 138 | 0.566 |
| 139 | 139 | 0.103 |
| 14 | 14 | 0.602 |
| 140 | 140 | 0.652 |
| 141 | 141 | 0.403 |
| 142 | 142 | 0.813 |
| 143 | 143 | 0.0852 |
| 144 | 144 | 0.962 |
| 145 | 145 | 0.952 |
| 146 | 146 | 0.0688 |
| 147 | 147 | 0.229 |
| 148 | 148 | 0.0161 |
| 149 | 149 | 0.529 |
| 15 | 15 | 0.0256 |
| 150 | 150 | 0.753 |
| 151 | 151 | 0.047 |
| 152 | 152 | 0.31 |
| 153 | 153 | 0.962 |
| 154 | 154 | 0.555 |
| 155 | 155 | 0.0156 |
| 156 | 156 | 0.783 |
| 157 | 157 | 0.646 |
| 158 | 158 | 0.455 |
| 159 | 159 | 0.169 |
| 16 | 16 | 0.449 |
| 160 | 160 | 0.29 |
| 161 | 161 | 0.126 |
| 162 | 162 | 0.888 |
| 163 | 163 | 0.856 |
| 164 | 164 | 0.728 |
| 165 | 165 | 0.337 |
| 166 | 166 | 0.0412 |
| 167 | 167 | 0.508 |
| 168 | 168 | 0.801 |
| 169 | 169 | 0.502 |
| 17 | 17 | 0.68 |
| 18 | 18 | 0.8 |
| 19 | 19 | 0.914 |
| 2 | 2 | 0.525 |
| 20 | 20 | 0.875 |
| 21 | 21 | 0.24 |
| 22 | 22 | 0.731 |
| 23 | 23 | 0.797 |
| 24 | 24 | 0.335 |
| 25 | 25 | 0.153 |
| 26 | 26 | 0.909 |
| 27 | 27 | 0.269 |
| 28 | 28 | 0.746 |
| 29 | 29 | 0.815 |
| 3 | 3 | 0.563 |
| 30 | 30 | 0.69 |
| 31 | 31 | 0.466 |
| 32 | 32 | 5.79542e-4 |
| 33 | 33 | 0.569 |
| 34 | 34 | 0.609 |
| 35 | 35 | 0.656 |
| 36 | 36 | 0.0439 |
| 37 | 37 | 0.748 |
| 38 | 38 | 0.297 |
| 39 | 39 | 0.815 |
| 4 | 4 | 0.777 |
| 40 | 40 | 0.0209 |
| 41 | 41 | 0.207 |
| 42 | 42 | 0.337 |
| 43 | 43 | 0.235 |
| 44 | 44 | 0.271 |
| 45 | 45 | 0.226 |
| 46 | 46 | 0.352 |
| 47 | 47 | 0.159 |
| 48 | 48 | 0.358 |
| 49 | 49 | 0.142 |
| 5 | 5 | 0.552 |
| 50 | 50 | 0.776 |
| 51 | 51 | 0.414 |
| 52 | 52 | 0.409 |
| 53 | 53 | 0.31 |
| 54 | 54 | 0.394 |
| 55 | 55 | 0.765 |
| 56 | 56 | 0.337 |
| 57 | 57 | 0.61 |
| 58 | 58 | 0.14 |
| 59 | 59 | 0.258 |
| 6 | 6 | 0.811 |
| 60 | 60 | 0.0684 |
| 61 | 61 | 0.427 |
| 62 | 62 | 0.127 |
| 63 | 63 | 0.395 |
| 64 | 64 | 0.216 |
| 65 | 65 | 0.318 |
| 66 | 66 | 0.382 |
| 67 | 67 | 0.826 |
| 68 | 68 | 0.787 |
| 69 | 69 | 0.359 |
| 7 | 7 | 0.082 |
| 70 | 70 | 0.0196 |
| 71 | 71 | 0.625 |
| 72 | 72 | 0.409 |
| 73 | 73 | 0.53 |
| 74 | 74 | 0.0575 |
| 75 | 75 | 0.652 |
| 76 | 76 | 0.9 |
| 77 | 77 | 0.792 |
| 78 | 78 | 0.0803 |
| 79 | 79 | 0.0457 |
| 8 | 8 | 0.0611 |
| 80 | 80 | 0.216 |
| 81 | 81 | 0.438 |
| 82 | 82 | 0.428 |
| 83 | 83 | 0.0501 |
| 84 | 84 | 0.279 |
| 85 | 85 | 0.193 |
| 86 | 86 | 0.745 |
| 87 | 87 | 0.0895 |
| 88 | 88 | 0.605 |
| 89 | 89 | 0.567 |
| 9 | 9 | 0.694 |
| 90 | 90 | 0.192 |
| 91 | 91 | 0.917 |
| 92 | 92 | 0.419 |
| 93 | 93 | 0.442 |
| 94 | 94 | 0.214 |
| 95 | 95 | 0.379 |
| 96 | 96 | 0.977 |
| 97 | 97 | 0.839 |
| 98 | 98 | 0.035 |
| 99 | 99 | 0.212 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12404
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000670 human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
0000406 (nuclear fraction sample)
0000670 (human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
