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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0005795,UBERON:0000995,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0006598,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00004740
|accession_numbers=CAGE;DRX007915;DRR008787;DRZ000212;DRZ001597;DRZ011562;DRZ012947
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000
|ancestors_in_cell_lineage_facet=CL:0000000
|ancestors_in_disease_facet=DOID:4,DOID:14566,DOID:0060072,DOID:0060084,DOID:127
|ancestors_in_disease_facet=DOID:4,DOID:14566,DOID:0060072,DOID:0060084,DOID:127
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102694
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.91!80.36!HAND2;;chr2:19558373..19558392,-!p1@OSR1!1.69!126.52!OSR1;;chr3:141150883..141150961,+!p6@ZBTB38!1.67!45.61!ZBTB38;;chr7:27224842..27224872,-!p1@HOXA11!1.58!36.92!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.56!60.82!DRAP1;;chr7:27224795..27224840,-!p2@HOXA11!1.55!34.21!HOXA11;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!55.39!CREB3L1;;chr19:13134772..13134822,+!p2@NFIX!1.54!49.41!NFIX;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!144.98!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.38!22.81!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.81!ZBED1;;chr2:176969228..176969260,+!p1@HOXD11!1.37!22.26!HOXD11;;chr3:25470156..25470227,+!p2@RARB!1.34!20.63!RARB;;chr11:65687362..65687436,+!p3@DRAP1!1.30!84.16!DRAP1;;chr3:141151009..141151033,+!p10@ZBTB38!1.29!18.46!ZBTB38;;chr15:96876966..96877017,+!p12@NR2F2!1.25!23.89!NR2F2;;chr19:13135582..13135600,+!p3@NFIX!1.22!15.75!NFIX;;chr6:34204921..34204939,+!p3@HMGA1!1.16!402.36!HMGA1;;chr4:174451350..174451363,-!p3@HAND2!1.16!13.57!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.07!10.86!EMX2;;chr6:19837592..19837621,+!p1@ID4!1.04!61.90!ID4;;chr15:42749722..42749739,-!p2@ZFP106!1.04!17.92!ZFP106;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.81!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!1.03!9.77!CREB3L1;;chr11:46333934..46333963,+!p5@CREB3L1!1.03!9.77!CREB3L1;;chr7:27239703..27239715,-!p1@HOXA13!1.03!9.77!HOXA13;;chr2:239756671..239756732,+!p1@TWIST2!1.01!29.86!TWIST2;;chr2:176973498..176973524,+!p1@HOXD10!1.01!9.23!HOXD10;;chr15:96869114..96869160,+!p11@NR2F2!1.00!12.49!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!0.99!27.69!TBX2;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.20!TWIST2;;chr19:13135386..13135435,+!p4@NFIX!0.99!8.69!NFIX;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.69!GATA4;;chr19:13136130..13136165,+!p6@NFIX!0.96!10.86!NFIX;;chr9:77112244..77112262,+!p1@RORB!0.96!9.23!RORB;;chr6:34205372..34205412,+!p5@HMGA1!0.95!41.27!HMGA1;;chr11:65687243..65687276,+!p8@DRAP1!0.95!10.86!DRAP1;;chr4:81118647..81118666,+!p1@PRDM8!0.94!10.32!PRDM8;;chr15:37390850..37390909,-!p3@MEIS2!0.93!15.20!MEIS2;;chr10:119302232..119302265,+!p1@EMX2!0.93!7.60!EMX2;;chr2:176969179..176969226,+!p2@HOXD11!0.93!7.60!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!0.93!7.60!FOXL2;;chr18:19749541..19749557,+!p1@GATA6!0.91!23.35!GATA6;;chr3:138665969..138665993,-!p2@FOXL2!0.91!7.06!FOXL2;;chr6:28321971..28321995,-!p1@ZNF323!0.91!7.06!ZNF323;;chr7:27213893..27213954,-!p1@HOXA10!0.91!7.06!HOXA10;;chr9:35732647..35732678,+!p2@CREB3!0.90!40.18!CREB3;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.24!FOSL1;;chr19:13136241..13136258,+!p7@NFIX!0.89!9.23!NFIX;;chr15:37391588..37391604,-!p11@MEIS2!0.88!8.69!MEIS2;;chr11:65687158..65687216,+!p4@DRAP1!0.87!38.55!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!0.87!29.86!NR2F1;;chr15:96874145..96874166,+!p7@NR2F2!0.86!12.49!NR2F2;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.97!SALL1;;chr10:119302645..119302712,+!p3@EMX2!0.84!5.97!EMX2;;chr2:176981499..176981522,+!p2@HOXD10!0.84!5.97!HOXD10;;chr3:25469815..25469866,+!p3@RARB!0.84!5.97!RARB;;chr17:3571863..3571881,-!p1@TAX1BP3!0.83!437.11!TAX1BP3;;chr11:65687222..65687240,+!p7@DRAP1!0.83!7.60!DRAP1;;chr3:12330560..12330579,+!p1@PPARG!0.82!6.52!PPARG;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.66!TWIST1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.32!NR2F2;;chr3:69811858..69811881,+!p5@MITF!0.81!5.43!MITF;;chr9:128510454..128510469,+!p3@PBX3!0.80!7.06!PBX3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!149.87!FOSL1;;chr17:59477275..59477286,+!p3@TBX2!0.79!7.06!TBX2;;chr6:152128810..152128827,+!p2@ESR1!0.77!4.89!ESR1;;chr2:176972000..176972025,+!p4@HOXD11!0.77!4.89!HOXD11;;chr3:141151044..141151053,+!p51@ZBTB38!0.77!4.89!ZBTB38;;chr1:170632285..170632309,+!p1@PRRX1!0.76!5.43!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.74!13.57!TWIST1;;chr15:96869222..96869251,+!p18@NR2F2!0.74!5.43!NR2F2;;chr17:46126136..46126152,+!p1@NFE2L1!0.73!254.67!NFE2L1;;chr15:37392724..37392757,-!p1@MEIS2!0.73!22.26!MEIS2;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.40!NR2F2;;chrX:48900782..48900793,-!p3@TFE3!0.73!8.69!TFE3;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!7.06!ZBTB38;;chr18:19749386..19749404,+!p2@GATA6!0.73!6.52!GATA6;;chr2:177001290..177001315,+!p1@HOXD3!0.73!4.34!HOXD3;;chr3:69811882..69811898,+!p6@MITF!0.73!4.34!MITF;;chr3:69811899..69811913,+!p11@MITF!0.73!4.34!MITF;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.73!4.34!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.73!4.34!HMGA2;;chr9:35732592..35732640,+!p1@CREB3!0.72!62.44!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.72!25.52!RARG;;chr15:96874927..96874938,+!p8@NR2F2!0.72!9.77!NR2F2;;chr19:13134457..13134462,+!p5@NFIX!0.72!8.14!NFIX;;chr17:7492684..7492778,-!p2@SOX15!0.70!9.23!SOX15;;chr17:46127997..46128015,+!p5@NFE2L1!0.68!5.43!NFE2L1;;chr19:50431999..50432026,+!p4@ATF5!0.68!5.43!ATF5;;chr6:28321909..28321965,-!p3@ZNF323!0.68!3.80!ZNF323;;chr2:19553530..19553547,-!p3@OSR1!0.68!3.80!OSR1;;chr4:111558135..111558198,-!p2@PITX2!0.68!3.80!PITX2;;chr4:26323764..26323821,+!p15@RBPJ!0.68!3.80!RBPJ;;chr15:96877047..96877056,+!p39@NR2F2!0.68!3.80!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.80!ZNF668;;chr17:46128217..46128243,+!p11@NFE2L1!0.68!3.80!NFE2L1;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.52!FOXD1;;chr11:8102846..8102892,+!p1@TUB!0.67!5.43!TUB;;chr17:38256799..38256815,-!p3@NR1D1!0.66!7.06!NR1D1;;chr11:65686952..65686975,+!p5@DRAP1!0.65!22.26!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.92!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.64!16.83!ZBTB20;;chr16:86600426..86600441,+!p1@FOXC2!0.64!9.23!FOXC2;;chr19:47922750..47922795,-!p1@MEIS3!0.64!5.97!MEIS3;;chr15:37390374..37390422,-!p9@MEIS2!0.64!4.34!MEIS2;;chr15:37392094..37392116,-!p6@MEIS2!0.64!4.34!MEIS2;;chr1:170632959..170632987,+!p4@PRRX1!0.64!3.80!PRRX1;;chr15:96874216..96874236,+!p13@NR2F2!0.63!5.43!NR2F2;;chr15:37392703..37392717,-!p8@MEIS2!0.63!4.89!MEIS2;;chr11:707063..707088,-!p4@DEAF1!0.63!4.34!DEAF1;;chr11:46332679..46332695,+!p12@CREB3L1!0.63!3.26!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!0.63!3.26!HMGA2;;chr16:51185318..51185348,-!p2@SALL1!0.63!3.26!SALL1;;chr17:59477403..59477414,+!p4@TBX2!0.63!3.26!TBX2;;chr2:176994408..176994492,+!p1@HOXD8!0.63!3.26!HOXD8;;chr5:139492456..139492489,+!p7@PURA!0.63!3.26!PURA;;chr7:27239740..27239759,-!p2@HOXA13!0.63!3.26!HOXA13;;chr17:38256822..38256851,-!p1@NR1D1!0.62!29.86!NR1D1;;chr3:12329397..12329433,+!p2@PPARG!0.62!8.14!PPARG;;chr2:200322654..200322707,-!p2@SATB2!0.62!4.89!SATB2;;chr3:25469724..25469773,+!p1@RARB!0.62!4.89!RARB;;chr5:72743793..72743855,-!p4@FOXD1!0.62!3.80!FOXD1;;chr9:35732561..35732587,+!p3@CREB3!0.61!15.20!CREB3;;chr14:24837368..24837401,+!p1@NFATC4!0.61!8.14!NFATC4;;chr9:128509663..128509715,+!p1@PBX3!0.60!11.95!PBX3;;chr15:37390482..37390572,-!p7@MEIS2!0.60!4.34!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.80!MEIS2;;chr5:92919100..92919135,+!p3@NR2F1!0.60!3.80!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.59!31.49!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.59!5.97!NR2F2;;chr20:39946400..39946423,-!p3@ZHX3!0.59!5.97!ZHX3;;chr11:706938..707008,-!p3@DEAF1!0.59!3.80!DEAF1;;chr15:37392534..37392562,-!p10@MEIS2!0.59!3.26!MEIS2;;chr5:92918956..92918969,+!p4@NR2F1!0.59!3.26!NR2F1;;chr1:164528410..164528428,+!p1@PBX1!0.58!25.52!PBX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.58!11.95!BHLHE41;;chr10:35484053..35484076,+!p1@CREM!0.58!8.14!CREM;;chr17:59477197..59477212,+!p2@TBX2!0.58!5.43!TBX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.58!3.26!CREB3L1;;chr1:151032860..151032918,+!p1@MLLT11!0.57!39.64!MLLT11;;chr15:96873984..96873999,+!p3@NR2F2!0.57!24.43!NR2F2;;chr22:41735880..41735903,+!p5@ZC3H7B!0.57!3.26!ZC3H7B;;chr1:164528687..164528711,+!p6@PBX1!0.57!3.26!PBX1;;chr1:170633262..170633285,+!p3@PRRX1!0.57!3.26!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.57!2.71!PRRX1;;chr15:96869165..96869183,+!p20@NR2F2!0.57!2.71!NR2F2;;chr16:67198633..67198671,+!p1@HSF4!0.57!2.71!HSF4;;chr19:13135566..13135577,+!p9@NFIX!0.57!2.71!NFIX;;chr19:13135731..13135787,+!p10@NFIX!0.57!2.71!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.57!2.71!NFIX;;chr6:152126830..152126847,+!p4@ESR1!0.57!2.71!ESR1;;chr7:100076673..100076682,-!p7@TSC22D4!0.57!2.71!TSC22D4;;chr7:27196267..27196311,-!p1@HOXA7!0.57!2.71!HOXA7;;chr10:119307702..119307723,+!p10@EMX2!0.57!2.71!EMX2;;chr11:46333883..46333900,+!p8@CREB3L1!0.57!2.71!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.71!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.57!2.71!HOXC9;;chr12:8186270..8186292,+!p3@FOXJ2!0.57!2.71!FOXJ2;;chr22:41763452..41763466,+!p2@TEF!0.57!2.71!TEF;;chr2:85981073..85981091,+!p5@ATOH8!0.57!2.71!ATOH8;;chr3:141150971..141150978,+!p60@ZBTB38!0.57!2.71!ZBTB38;;chr4:26324474..26324501,+!p16@RBPJ!0.57!2.71!RBPJ;;chr12:124873357..124873401,-!p1@NCOR2!0.56!38.01!NCOR2;;chr14:21566731..21566836,-!p1@ZNF219!0.56!34.75!ZNF219;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.52!ZNF503;;chr5:92919068..92919082,+!p5@NR2F1!0.56!3.26!NR2F1;;chr15:37392593..37392607,-!p13@MEIS2!0.56!3.26!MEIS2;;chr9:2158443..2158481,+!p2@SMARCA2!0.55!8.69!SMARCA2;;chr12:66218255..66218304,+!p3@HMGA2!0.55!8.14!HMGA2;;chr13:45151403..45151433,-!p5@TSC22D1!0.55!6.52!TSC22D1;;chr13:45151259..45151326,-!p2@TSC22D1!0.54!18.46!TSC22D1;;chr12:57504975..57505019,-!p2@STAT6!0.54!12.49!STAT6;;chr1:164528384..164528409,+!p3@PBX1!0.54!9.23!PBX1;;chr12:26277929..26277955,-!p3@BHLHE41!0.54!3.80!BHLHE41;;chr9:35732514..35732530,+!p5@CREB3!0.54!3.80!CREB3;;chr7:106809470..106809481,+!p2@HBP1!0.54!3.80!HBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.54!2.71!SHOX2;;chr19:13106214..13106382,+!p1@NFIX!0.53!71.13!NFIX;;chr17:3571887..3571918,-!p2@TAX1BP3!0.53!34.21!TAX1BP3;;chr3:178789522..178789564,-!p2@ZMAT3!0.53!22.26!ZMAT3;;chrX:66763856..66763896,+!p1@AR!0.53!3.80!AR;;chr12:66218836..66218888,+!p1@HMGA2!0.52!27.69!HMGA2;;chr2:66662281..66662308,+!p1@MEIS1!0.52!9.77!MEIS1;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.34!ATOH8;;chr3:128206762..128206781,-!p2@GATA2!0.51!1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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0005795,UBERON:0010316
|fonse_cell_line=FF:0102694
|fonse_cell_line=FF:0102694
|fonse_cell_line_closure=FF:0102694
|fonse_cell_line_closure=FF:0102694
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg38.nobarcode.ctss.bed.gz
|id=FF:10569-108B2
|id=FF:10569-108B2
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102694
|is_a=EFO:0002091;;FF:0000210;;FF:0102694
|is_obsolete=
|library_id=CNhs11722
|library_id_phase_based=2:CNhs11722
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10569
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10569
|name=leiomyoma cell line:10964C
|name=leiomyoma cell line:10964C
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11722,LSID819,release009,COMPLETED
|profile_hcage=CNhs11722,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 57: Line 78:
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Line 77: Line 99:
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|sample_tissue=uterus
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|top_motifs=HMX1:2.15924329445;NKX2-2,8:1.96522376595;ALX4:1.83318022295;UFEwm:1.82302343689;RXR{A,B,G}:1.69772687808;PPARG:1.68427574988;GCM1,2:1.65625400522;GZF1:1.65324333567;ESR1:1.51180856522;KLF4:1.45239335096;EN1,2:1.4234598563;HSF1,2:1.36943400697;ZBTB6:1.30866225352;NFE2L1:1.28319173101;ATF6:1.27996372624;HES1:1.24871225791;HOX{A4,D4}:1.24558743159;NR1H4:1.22768306743;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15581549661;ZIC1..3:1.04809233286;TFAP4:0.991231223726;TFCP2:0.986310236948;XBP1:0.960556565772;ARID5B:0.95895512141;NKX3-1:0.953664435525;TAL1_TCF{3,4,12}:0.946244200888;SPZ1:0.930349349906;ESRRA:0.926513367197;RXRA_VDR{dimer}:0.919364562819;LHX3,4:0.832179296718;ZNF238:0.830002914714;IKZF1:0.828597168344;EBF1:0.825390244863;MAFB:0.824376401056;CRX:0.795963762297;TBX4,5:0.788885824044;bHLH_family:0.741458937205;TLX1..3_NFIC{dimer}:0.740871770183;POU6F1:0.723090967051;SRF:0.707761540509;NR6A1:0.706209328483;AIRE:0.658726256299;CDC5L:0.631429773471;MYFfamily:0.608382767862;HIC1:0.585901366377;TEAD1:0.548912200904;TP53:0.537365567032;HOXA9_MEIS1:0.535386257789;HAND1,2:0.530550675518;NKX3-2:0.470703306368;GFI1B:0.46548214475;RFX2..5_RFXANK_RFXAP:0.448122685018;TFAP2{A,C}:0.422594884205;SREBF1,2:0.392305125907;MYBL2:0.375173716169;NFE2L2:0.357824734727;GTF2A1,2:0.336572704176;SMAD1..7,9:0.330927318872;HOX{A5,B5}:0.330418038638;ZNF148:0.328536163208;PRDM1:0.315219300961;LMO2:0.306838296188;NR3C1:0.274623736912;YY1:0.241104237522;GLI1..3:0.220397540519;TBP:0.216218099348;FOSL2:0.211003618316;REST:0.186885298255;ALX1:0.185071581669;GATA4:0.172246274229;PAX5:0.144010479217;POU3F1..4:0.136904729477;GTF2I:0.129308166597;BACH2:0.125839536675;TOPORS:0.107702436441;RREB1:0.104822151234;EVI1:0.102587890181;MTE{core}:0.0871981259178;PAX1,9:0.0705691915495;HNF1A:0.068592962659;HLF:0.060225087848;T:0.0483768882383;FOS_FOS{B,L1}_JUN{B,D}:0.0474170390614;VSX1,2:0.0471081355985;AR:0.0436450327818;FOXD3:0.0415938974214;RFX1:0.03626246113;NANOG{mouse}:0.0337102021283;HNF4A_NR2F1,2:0.0165053132091;ONECUT1,2:-0.0124172294449;NFATC1..3:-0.014176265986;JUN:-0.0202534470639;TFAP2B:-0.0334965304271;NHLH1,2:-0.0403210406622;NR5A1,2:-0.0439315495735;ZNF423:-0.0443432351291;DMAP1_NCOR{1,2}_SMARC:-0.085522537954;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.11474302204;PAX4:-0.120283883011;ELK1,4_GABP{A,B1}:-0.122323985598;PAX6:-0.138785298702;NFIX:-0.170119832279;NFE2:-0.171125071134;MZF1:-0.177528165406;MAZ:-0.184084999317;NKX6-1,2:-0.198204101886;CEBPA,B_DDIT3:-0.202364309846;GFI1:-0.229814385747;NRF1:-0.235549048133;STAT2,4,6:-0.246742153549;PAX3,7:-0.274092505058;PATZ1:-0.294665445771;EGR1..3:-0.33382454077;HMGA1,2:-0.342525785329;IRF1,2:-0.413666439529;PAX2:-0.418936476745;MTF1:-0.425570838344;XCPE1{core}:-0.425578188952;SP1:-0.429185170498;FOXM1:-0.447348801038;MEF2{A,B,C,D}:-0.459076449524;RUNX1..3:-0.460337257772;ZNF384:-0.461087275866;AHR_ARNT_ARNT2:-0.462714544354;HIF1A:-0.462969209042;FOXL1:-0.473405124494;NFKB1_REL_RELA:-0.478031189963;FOXQ1:-0.48913063685;DBP:-0.492799168924;SNAI1..3:-0.494604783965;TGIF1:-0.505392778185;CDX1,2,4:-0.529462114048;HOX{A6,A7,B6,B7}:-0.546141893285;SPI1:-0.548893504007;MED-1{core}:-0.549773495198;FOX{D1,D2}:-0.553396821377;PRRX1,2:-0.558791181791;ZNF143:-0.565349794008;TEF:-0.570165630961;SOX17:-0.57034327447;MYOD1:-0.581427913367;NANOG:-0.588045427438;ATF5_CREB3:-0.604718285939;IRF7:-0.608189712134;ZFP161:-0.612179241541;FOXO1,3,4:-0.631691025224;FOXP3:-0.638121570381;ETS1,2:-0.638262922416;SOX5:-0.69199662249;SPIB:-0.714708116593;STAT5{A,B}:-0.721217101598;LEF1_TCF7_TCF7L1,2:-0.727170467448;ZBTB16:-0.728052962905;NFIL3:-0.739304957262;NKX2-3_NKX2-5:-0.750482595785;PDX1:-0.759944068595;FOXN1:-0.77785488538;POU1F1:-0.790361295857;HBP1_HMGB_SSRP1_UBTF:-0.803151600254;SOX2:-0.809906932148;EP300:-0.81238622687;ELF1,2,4:-0.82055256646;GATA6:-0.855183751137;ZEB1:-0.943183824311;PAX8:-0.962222614498;MYB:-0.981766003786;ATF2:-1.00713043779;PBX1:-1.0949341806;CREB1:-1.12072514418;OCT4_SOX2{dimer}:-1.12328262806;E2F1..5:-1.13278134056;ADNP_IRX_SIX_ZHX:-1.15501223052;ATF4:-1.18517978111;NFY{A,B,C}:-1.19285818651;TLX2:-1.20475657945;RORA:-1.2132544268;STAT1,3:-1.24175498276;BREu{core}:-1.36637790204;FOX{I1,J2}:-1.39134943554;CUX2:-1.39623181356;POU5F1:-1.43403673787;NKX2-1,4:-1.49046337062;FOXP1:-1.49231879284;TFDP1:-1.63292247114;FOX{F1,F2,J1}:-1.65187909736;PITX1..3:-1.65379446322;IKZF2:-1.70187530902;BPTF:-1.73437021752;SOX{8,9,10}:-1.76832984871;POU2F1..3:-1.86836493977;RBPJ:-2.02450490048;FOXA2:-2.38599645856
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10569-108B2;search_select_hide=table117:FF:10569-108B2
}}
}}

Latest revision as of 14:29, 3 June 2020

Name:leiomyoma cell line:10964C
Species:Human (Homo sapiens)
Library ID:CNhs11722
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueuterus
dev stageNA
sexfemale
ageNA
cell typesmooth muscle cell
cell lineNA
companyCoriell
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.4

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004740
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11722 CAGE DRX007915 DRR008787
Accession ID Hg19

Library idBAMCTSS
CNhs11722 DRZ000212 DRZ001597
Accession ID Hg38

Library idBAMCTSS
CNhs11722 DRZ011562 DRZ012947
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0821
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.409
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.325
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.212
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.319
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.246
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.301
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.319
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.654
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00135
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.808
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.382
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.188
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.188
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.319
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.465
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.501
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.188
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.501
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11722

Jaspar motifP-value
MA0002.20.726
MA0003.10.199
MA0004.11
MA0006.10.133
MA0007.10.455
MA0009.10.348
MA0014.10.912
MA0017.10.653
MA0018.28.81881e-6
MA0019.10.38
MA0024.18.13293e-8
MA0025.10.00129
MA0027.10.893
MA0028.10.078
MA0029.10.956
MA0030.10.0401
MA0031.10.202
MA0035.20.691
MA0038.10.00244
MA0039.20.164
MA0040.10.566
MA0041.10.474
MA0042.10.844
MA0043.14.31992e-6
MA0046.10.421
MA0047.20.264
MA0048.10.752
MA0050.10.00112
MA0051.10.255
MA0052.10.0905
MA0055.10.317
MA0057.10.0348
MA0058.10.884
MA0059.10.569
MA0060.16.4992e-9
MA0061.10.836
MA0062.22.64567e-4
MA0065.20.108
MA0066.10.0538
MA0067.10.0153
MA0068.10.507
MA0069.10.167
MA0070.10.124
MA0071.10.21
MA0072.10.921
MA0073.10.917
MA0074.10.123
MA0076.10.0509
MA0077.10.201
MA0078.10.474
MA0079.20.72
MA0080.21.73941e-7
MA0081.10.0556
MA0083.10.0498
MA0084.10.893
MA0087.10.963
MA0088.10.897
MA0090.10.293
MA0091.10.492
MA0092.10.481
MA0093.10.964
MA0099.20.446
MA0100.10.071
MA0101.10.0107
MA0102.20.00384
MA0103.10.736
MA0104.20.326
MA0105.10.0599
MA0106.10.0717
MA0107.10.0168
MA0108.20.0386
MA0111.10.527
MA0112.20.00101
MA0113.10.818
MA0114.10.569
MA0115.10.966
MA0116.10.163
MA0117.10.669
MA0119.10.16
MA0122.10.969
MA0124.10.00908
MA0125.10.484
MA0131.10.299
MA0135.10.401
MA0136.15.53424e-10
MA0137.20.0274
MA0138.20.316
MA0139.10.205
MA0140.10.34
MA0141.10.103
MA0142.10.135
MA0143.10.151
MA0144.10.28
MA0145.10.158
MA0146.10.202
MA0147.10.561
MA0148.10.841
MA0149.10.842
MA0150.10.984
MA0152.10.796
MA0153.10.434
MA0154.10.28
MA0155.10.0852
MA0156.19.8794e-7
MA0157.10.584
MA0159.10.0614
MA0160.10.905
MA0162.10.0649
MA0163.10.00477
MA0164.10.457
MA0258.10.102
MA0259.10.69



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11722

Novel motifP-value
10.393
100.542
1000.859
1010.794
1020.53
1030.0713
1040.615
1050.233
1060.114
1070.268
1080.213
1090.14
110.122
1100.292
1110.796
1120.0721
1130.0294
1140.0326
1150.0115
1160.062
1170.465
1180.506
1190.727
120.531
1200.107
1210.228
1220.463
1230.0173
1240.902
1250.933
1260.864
1270.744
1280.182
1290.554
130.95
1300.814
1310.412
1320.567
1330.0564
1340.351
1350.976
1360.29
1370.298
1380.934
1390.104
140.72
1400.877
1410.436
1420.947
1430.0994
1440.213
1450.546
1460.736
1470.0509
1480.108
1490.00252
150.759
1500.518
1510.417
1520.0346
1530.873
1540.654
1550.313
1560.887
1570.882
1580.0157
1590.189
160.0134
1600.208
1610.618
1620.428
1630.752
1640.125
1650.917
1660.108
1670.752
1680.639
1690.0351
170.264
180.288
190.04
20.31
200.53
210.222
220.0573
230.349
240.429
250.495
260.356
270.0888
280.275
290.109
30.272
300.41
310.315
326.09292e-6
330.832
340.816
350.206
360.0853
370.0173
380.928
390.207
40.509
400.93
410.889
420.763
430.325
440.00459
450.55
460.09
470.534
480.511
490.827
50.815
500.794
510.362
520.455
530.154
540.386
550.318
560.523
570.876
580.813
590.0301
60.951
600.419
610.913
620.736
630.318
640.686
650.211
660.601
670.567
680.381
690.192
70.285
700.00759
710.173
720.872
730.0211
740.627
750.345
760.854
770.00662
780.591
790.00727
80.03
800.214
810.236
820.0404
830.353
840.449
850.101
860.461
870.0456
880.491
890.0154
90.435
900.991
910.93
920.0536
930.404
940.805
950.257
960.934
970.947
980.616
990.0329



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11722


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)

DOID: Disease
4 (disease)
14566 (disease of cellular proliferation)
0060072 (benign neoplasm)
0060084 (cell type benign neoplasm)
127 (leiomyoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102694 (leiomyoma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

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