FF:11454-119A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005417 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008258;DRR009130;DRZ000555;DRZ001940;DRZ011905;DRZ013290 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.78!156.85!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.65!58.92!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.64!48.24!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.49!77.86!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.48!843.20!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.33!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.71!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.40!107.00!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.38!26.22!PRRX1;;chr12:66218212..66218244,+!p5@HMGA2!1.35!31.08!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.32!20.07!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.31!36.75!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.31!24.44!TFAP2C;;chr2:239756739..239756755,+!p2@TWIST2!1.30!31.89!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.22!26.06!TCF12;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.94!TWIST2;;chr6:85474299..85474324,-!p1@TBX18!1.19!26.06!TBX18;;chr17:46675558..46675577,-!p2@HOXB6!1.13!12.63!HOXB6;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.82!RFX8;;chr18:52969844..52969895,-!p27@TCF4!1.08!11.01!TCF4;;chr15:83953397..83953425,-!p1@BNC1!1.02!11.01!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.02!9.55!HOXC8;;chr1:170632439..170632465,+!p11@PRRX1!1.01!9.23!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.00!8.90!SOX11;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.74!HOXD8;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.12!OSR1;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.42!IRX1;;chr20:42543441..42543497,+!p1@TOX2!0.96!37.39!TOX2;;chr17:41622765..41622821,-!p2@ETV4!0.96!12.63!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.93!HOXB6;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.90!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.94!7.77!HOXC4;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.82!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.91!18.29!PPARG;;chr2:200322654..200322707,-!p2@SATB2!0.91!10.52!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.91!7.12!ZIC1;;chr17:41623009..41623053,-!p4@ETV4!0.90!11.49!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.96!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.90!6.96!RUNX1T1;;chr18:52969674..52969685,-!p24@TCF4!0.89!6.80!TCF4;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.64!HOXB3;;chr5:158526917..158526932,-!p1@EBF1!0.87!16.51!EBF1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.96!SHOX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.87!6.47!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.47!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.86!6.64!GLIS1;;chr2:223163706..223163730,-!p1@PAX3!0.86!6.31!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.86!6.31!HOXC5;;chr5:2751785..2751808,-!p2@IRX2!0.86!6.31!IRX2;;chr3:12329397..12329433,+!p2@PPARG!0.84!14.08!PPARG;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.84!5.99!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.55!FOXM1;;chr6:85474198..85474212,-!p3@TBX18!0.81!5.50!TBX18;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.50!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.80!17.97!AHRR;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.11!TOX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.26!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!0.79!5.18!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.78!144.07!FOSL1;;chr12:66218469..66218477,+!p16@HMGA2!0.78!5.02!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.78!5.02!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!0.77!27.84!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.12!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.77!19.10!BRCA1;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.15!FOXF1;;chr6:85473156..85473210,-!p2@TBX18!0.77!6.15!TBX18;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.86!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.86!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.86!ZIC1;;chr7:14029283..14029311,-!p1@ETV1!0.76!27.68!ETV1;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.80!HOXB7;;chr16:86612320..86612394,+!p1@FOXL1!0.76!4.69!FOXL1;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.69!HOXC10;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.45!HOXB2;;chr17:41623692..41623715,-!p1@ETV4!0.74!21.37!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.04!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.74!8.26!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.74!4.53!HAND2;;chr19:42636586..42636607,-!p1@POU2F2!0.73!13.11!POU2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.73!5.83!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.72!29.95!SNAI2;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.65!TWIST1;;chr17:46667594..46667619,-!p1@HOXB3!0.72!4.21!HOXB3;;chr17:46671108..46671147,-!p1@HOXB5!0.72!4.21!HOXB5;;chr17:46622070..46622109,-!p1@HOXB2!0.71!9.87!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.70!4.05!HOXB8;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.21!HMGA2;;chr17:46691732..46691766,-!p4@HOXB8!0.69!3.88!HOXB8;;chr21:47063625..47063658,+!p1@PCBP3!0.68!18.78!PCBP3;;chr17:59477233..59477263,+!p1@TBX2!0.68!13.11!TBX2;;chr17:46688334..46688385,-!p1@HOXB7!0.68!5.83!HOXB7;;chr6:45390025..45390076,+!p2@RUNX2!0.67!9.71!RUNX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.64!CREB3L1;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.83!HOXB4;;chr5:3595934..3595957,+!p2@IRX1!0.67!3.72!IRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.67!3.72!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.72!HAND2;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.72!HOXC9;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.15!ELK3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.21!HOXB2;;chr5:3595961..3595975,+!p3@IRX1!0.66!3.56!IRX1;;chr2:119604456..119604501,-!p2@EN1!0.66!3.56!EN1;;chr2:119605214..119605230,-!p1@EN1!0.66!3.56!EN1;;chr6:34204672..34204692,+!p1@HMGA1!0.65!455.02!HMGA1;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.55!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.69!PRRX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.65!3.88!ZNF385D;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.75!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!0.64!36.75!HMGA2;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.20!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.64!3.40!HOXA9;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.40!HOXC8;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.40!TBX15;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.40!RFX8;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.40!SHOX2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.40!HOXB6;;chr6:31126291..31126399,+!p1@TCF19!0.63!36.26!TCF19;;chr4:4861385..4861398,+!p1@MSX1!0.63!11.17!MSX1;;chr21:36260773..36260804,-!p7@RUNX1!0.63!4.69!RUNX1;;chr1:170633058..170633084,+!p5@PRRX1!0.63!3.24!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.24!RFX8;;chr2:175199697..175199706,+!p2@SP9!0.63!3.24!SP9;;chr16:86600870..86600921,+!p2@FOXC2!0.63!3.24!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.62!5.18!ENO1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.67!TAL1;;chr19:22817119..22817145,+!p1@ZNF492!0.61!5.67!ZNF492;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.08!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.08!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.61!3.08!HOXC8;;chr12:66358080..66358094,+!p15@HMGA2!0.61!3.08!HMGA2;;chr5:158527139..158527161,-!p5@EBF1!0.61!3.08!EBF1;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.87!WDHD1;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.88!DPF1;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.34!MATR3;;chr2:169312600..169312606,+!p2@CERS6!0.59!5.02!CERS6;;chr12:54447599..54447630,+!p3@HOXC4!0.59!3.72!HOXC4;;chr12:54422217..54422239,+!p3@HOXC6!0.59!2.91!HOXC6;;chr3:141121820..141121838,+!p9@ZBTB38!0.59!2.91!ZBTB38;;chr5:158527104..158527135,-!p4@EBF1!0.59!2.91!EBF1;;chr6:34204973..34204990,+!p4@HMGA1!0.58!46.30!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.81!TBX3;;chr1:8934931..8934947,-!p4@ENO1!0.58!11.01!ENO1;;chr11:19263192..19263222,-!p2@E2F8!0.58!3.56!E2F8;;chr8:128748308..128748324,+!p2@MYC!0.57!93.40!MYC;;chr1:170632959..170632987,+!p4@PRRX1!0.57!3.08!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.57!2.75!PRRX1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.75!HOXB6;;chr2:102091590..102091601,-!p5@RFX8!0.57!2.75!RFX8;;chr3:147111198..147111225,+!p4@ZIC1!0.57!2.75!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.57!2.75!ZNF385D;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.59!TEAD4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.56!13.44!LRRFIP2;;chr14:61116183..61116208,-!p1@SIX1!0.56!11.98!SIX1;;chr3:12329320..12329338,+!p4@PPARG!0.56!2.91!PPARG;;chr2:96012353..96012378,+!p4@KCNIP3!0.56!2.59!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.56!2.59!ZNF732;;chr12:54447686..54447704,+!p5@HOXC4!0.56!2.59!HOXC4;;chr17:46671504..46671541,-!p2@HOXB5!0.56!2.59!HOXB5;;chr17:46675586..46675600,-!p6@HOXB6!0.56!2.59!HOXB6;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.71!AEBP1;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.21!MXD3;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.53!ZBTB16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.43!PRRX1;;chr17:41622731..41622764,-!p5@ETV4!0.54!2.43!ETV4;;chrX:136648643..136648711,+!p2@ZIC3!0.54!2.43!ZIC3;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.76!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.53!8.58!GLI3;;chr17:41622834..41622883,-!p6@ETV4!0.53!3.08!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.83!IRX3;;chr4:206390..206444,+!p1@ZNF876P!0.52!4.69!ZNF876P;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.43!MYBL2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.26!ZHX3;;chr4:26322267..26322334,+!p3@RBPJ!0.51!6.47!RBPJ;;chr2:185463247..185463263,+!p1@ZNF804A!0.51!4.53!ZNF804A;;chr12:66218003..66218018,+!p9@HMGA2!0.51!2.91!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.51!2.27!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.51!2.27!HOXC9;;chr2:96012397..96012417,+!p3@KCNIP3!0.51!2.27!KCNIP3;;chr3:147127177..147127194,+!p2@ZIC1!0.51!2.27!ZIC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.51!2.27!PEG3;;chr1:170632310..170632321,+!p15@PRRX1!0.51!2.27!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.51!2.27!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!0.51!2.27!EBF2;;chr12:77459306..77459365,-!p1@E2F7!0.50!35.61!E2F7;;chr20:42295713..42295738,+!p2@MYBL2!0.50!16.5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| |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.78!156.85!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.65!58.92!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.64!48.24!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.49!77.86!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.48!843.20!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.33!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.71!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.40!107.00!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.38!26.22!PRRX1;;chr12:66218212..66218244,+!p5@HMGA2!1.35!31.08!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.32!20.07!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.31!36.75!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.31!24.44!TFAP2C;;chr2:239756739..239756755,+!p2@TWIST2!1.30!31.89!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.22!26.06!TCF12;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.94!TWIST2;;chr6:85474299..85474324,-!p1@TBX18!1.19!26.06!TBX18;;chr17:46675558..46675577,-!p2@HOXB6!1.13!12.63!HOXB6;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.82!RFX8;;chr18:52969844..52969895,-!p27@TCF4!1.08!11.01!TCF4;;chr15:83953397..83953425,-!p1@BNC1!1.02!11.01!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.02!9.55!HOXC8;;chr1:170632439..170632465,+!p11@PRRX1!1.01!9.23!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.00!8.90!SOX11;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.74!HOXD8;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.12!OSR1;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.42!IRX1;;chr20:42543441..42543497,+!p1@TOX2!0.96!37.39!TOX2;;chr17:41622765..41622821,-!p2@ETV4!0.96!12.63!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.93!HOXB6;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.90!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.94!7.77!HOXC4;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.82!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.91!18.29!PPARG;;chr2:200322654..200322707,-!p2@SATB2!0.91!10.52!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.91!7.12!ZIC1;;chr17:41623009..41623053,-!p4@ETV4!0.90!11.49!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.96!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.90!6.96!RUNX1T1;;chr18:52969674..52969685,-!p24@TCF4!0.89!6.80!TCF4;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.64!HOXB3;;chr5:158526917..158526932,-!p1@EBF1!0.87!16.51!EBF1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.96!SHOX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.87!6.47!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.47!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.86!6.64!GLIS1;;chr2:223163706..223163730,-!p1@PAX3!0.86!6.31!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.86!6.31!HOXC5;;chr5:2751785..2751808,-!p2@IRX2!0.86!6.31!IRX2;;chr3:12329397..12329433,+!p2@PPARG!0.84!14.08!PPARG;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.84!5.99!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.55!FOXM1;;chr6:85474198..85474212,-!p3@TBX18!0.81!5.50!TBX18;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.50!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.80!17.97!AHRR;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.11!TOX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.26!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!0.79!5.18!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.78!144.07!FOSL1;;chr12:66218469..66218477,+!p16@HMGA2!0.78!5.02!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.78!5.02!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!0.77!27.84!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.12!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.77!19.10!BRCA1;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.15!FOXF1;;chr6:85473156..85473210,-!p2@TBX18!0.77!6.15!TBX18;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.86!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.86!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.86!ZIC1;;chr7:14029283..14029311,-!p1@ETV1!0.76!27.68!ETV1;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.80!HOXB7;;chr16:86612320..86612394,+!p1@FOXL1!0.76!4.69!FOXL1;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.69!HOXC10;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.45!HOXB2;;chr17:41623692..41623715,-!p1@ETV4!0.74!21.37!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.04!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.74!8.26!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.74!4.53!HAND2;;chr19:42636586..42636607,-!p1@POU2F2!0.73!13.11!POU2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.73!5.83!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.72!29.95!SNAI2;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.65!TWIST1;;chr17:46667594..46667619,-!p1@HOXB3!0.72!4.21!HOXB3;;chr17:46671108..46671147,-!p1@HOXB5!0.72!4.21!HOXB5;;chr17:46622070..46622109,-!p1@HOXB2!0.71!9.87!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.70!4.05!HOXB8;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.21!HMGA2;;chr17:46691732..46691766,-!p4@HOXB8!0.69!3.88!HOXB8;;chr21:47063625..47063658,+!p1@PCBP3!0.68!18.78!PCBP3;;chr17:59477233..59477263,+!p1@TBX2!0.68!13.11!TBX2;;chr17:46688334..46688385,-!p1@HOXB7!0.68!5.83!HOXB7;;chr6:45390025..45390076,+!p2@RUNX2!0.67!9.71!RUNX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.64!CREB3L1;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.83!HOXB4;;chr5:3595934..3595957,+!p2@IRX1!0.67!3.72!IRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.67!3.72!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.72!HAND2;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.72!HOXC9;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.15!ELK3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.21!HOXB2;;chr5:3595961..3595975,+!p3@IRX1!0.66!3.56!IRX1;;chr2:119604456..119604501,-!p2@EN1!0.66!3.56!EN1;;chr2:119605214..119605230,-!p1@EN1!0.66!3.56!EN1;;chr6:34204672..34204692,+!p1@HMGA1!0.65!455.02!HMGA1;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.55!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.69!PRRX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.65!3.88!ZNF385D;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.75!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!0.64!36.75!HMGA2;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.20!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.64!3.40!HOXA9;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.40!HOXC8;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.40!TBX15;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.40!RFX8;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.40!SHOX2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.40!HOXB6;;chr6:31126291..31126399,+!p1@TCF19!0.63!36.26!TCF19;;chr4:4861385..4861398,+!p1@MSX1!0.63!11.17!MSX1;;chr21:36260773..36260804,-!p7@RUNX1!0.63!4.69!RUNX1;;chr1:170633058..170633084,+!p5@PRRX1!0.63!3.24!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.24!RFX8;;chr2:175199697..175199706,+!p2@SP9!0.63!3.24!SP9;;chr16:86600870..86600921,+!p2@FOXC2!0.63!3.24!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.62!5.18!ENO1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.67!TAL1;;chr19:22817119..22817145,+!p1@ZNF492!0.61!5.67!ZNF492;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.08!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.08!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.61!3.08!HOXC8;;chr12:66358080..66358094,+!p15@HMGA2!0.61!3.08!HMGA2;;chr5:158527139..158527161,-!p5@EBF1!0.61!3.08!EBF1;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.87!WDHD1;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.88!DPF1;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.34!MATR3;;chr2:169312600..169312606,+!p2@CERS6!0.59!5.02!CERS6;;chr12:54447599..54447630,+!p3@HOXC4!0.59!3.72!HOXC4;;chr12:54422217..54422239,+!p3@HOXC6!0.59!2.91!HOXC6;;chr3:141121820..141121838,+!p9@ZBTB38!0.59!2.91!ZBTB38;;chr5:158527104..158527135,-!p4@EBF1!0.59!2.91!EBF1;;chr6:34204973..34204990,+!p4@HMGA1!0.58!46.30!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.81!TBX3;;chr1:8934931..8934947,-!p4@ENO1!0.58!11.01!ENO1;;chr11:19263192..19263222,-!p2@E2F8!0.58!3.56!E2F8;;chr8:128748308..128748324,+!p2@MYC!0.57!93.40!MYC;;chr1:170632959..170632987,+!p4@PRRX1!0.57!3.08!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.57!2.75!PRRX1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.75!HOXB6;;chr2:102091590..102091601,-!p5@RFX8!0.57!2.75!RFX8;;chr3:147111198..147111225,+!p4@ZIC1!0.57!2.75!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.57!2.75!ZNF385D;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.59!TEAD4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.56!13.44!LRRFIP2;;chr14:61116183..61116208,-!p1@SIX1!0.56!11.98!SIX1;;chr3:12329320..12329338,+!p4@PPARG!0.56!2.91!PPARG;;chr2:96012353..96012378,+!p4@KCNIP3!0.56!2.59!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.56!2.59!ZNF732;;chr12:54447686..54447704,+!p5@HOXC4!0.56!2.59!HOXC4;;chr17:46671504..46671541,-!p2@HOXB5!0.56!2.59!HOXB5;;chr17:46675586..46675600,-!p6@HOXB6!0.56!2.59!HOXB6;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.71!AEBP1;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.21!MXD3;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.53!ZBTB16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.43!PRRX1;;chr17:41622731..41622764,-!p5@ETV4!0.54!2.43!ETV4;;chrX:136648643..136648711,+!p2@ZIC3!0.54!2.43!ZIC3;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.76!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.53!8.58!GLI3;;chr17:41622834..41622883,-!p6@ETV4!0.53!3.08!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.83!IRX3;;chr4:206390..206444,+!p1@ZNF876P!0.52!4.69!ZNF876P;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.43!MYBL2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.26!ZHX3;;chr4:26322267..26322334,+!p3@RBPJ!0.51!6.47!RBPJ;;chr2:185463247..185463263,+!p1@ZNF804A!0.51!4.53!ZNF804A;;chr12:66218003..66218018,+!p9@HMGA2!0.51!2.91!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.51!2.27!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.51!2.27!HOXC9;;chr2:96012397..96012417,+!p3@KCNIP3!0.51!2.27!KCNIP3;;chr3:147127177..147127194,+!p2@ZIC1!0.51!2.27!ZIC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.51!2.27!PEG3;;chr1:170632310..170632321,+!p15@PRRX1!0.51!2.27!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.51!2.27!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!0.51!2.27!EBF2;;chr12:77459306..77459365,-!p1@E2F7!0.50!35.61!E2F7;;chr20:42295713..42295738,+!p2@MYBL2!0.50!16.5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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor5.CNhs12055.11454-119A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor5.CNhs12055.11454-119A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor5.CNhs12055.11454-119A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor5.CNhs12055.11454-119A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor5.CNhs12055.11454-119A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11454-119A5 | |id=FF:11454-119A5 | ||
|is_a=EFO:0002091;;FF:0000062 | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12055 | |||
|library_id_phase_based=2:CNhs12055 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11454 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11454 | |||
|name=Fibroblast - Dermal, donor5 | |name=Fibroblast - Dermal, donor5 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12055,LSID838,release011,COMPLETED | |profile_hcage=CNhs12055,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.212203493447947,0.147701427826032,0,0,0,0,0,0,0,0,0,0,0,0.0651586387455666,0,0.338647428462356,0,0.147369494509197,0,0,0,0.196781092750337,0,0,0.124569528610739,0,0,0,0,0,0,0,0,0,0,0.171907396292758,0,0.0561531765461276,0.0169365635065124,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.329013375992186,0,0,0,-0.0969923612426051,0,0,0.119479628522012,0,0,0,0,0,0,0,0,0.0651586387455666,0,0,0,0,0,0,0,0,0,0.0934816315200053,0,0,0,0,0,-0.0115518997947441,0.0325793193727833,0,0,-0.0139750729964334,-0.125243704549489,0,0.0651586387455666,0.0325793193727833,0,-0.0980353512377064,0.00251374643944275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149611625482931,0,0,0,-0.121778579634628,-0.496710178663459,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2305 | |rna_catalog_number=SC2305 | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=TFDP1:1.67595613984;PAX8:1.52957468842;NKX3-1:1.52211650036;GFI1:1.26125689755;E2F1..5:1.26037034626;NR3C1:0.989433927156;NFY{A,B,C}:0.969734912176;POU1F1:0.956314739142;NKX2-2,8:0.948645997771;TOPORS:0.863409971478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.848443719654;MYB:0.842195534786;ZNF238:0.835710371665;PDX1:0.792172630582;ALX4:0.76707529735;HOXA9_MEIS1:0.757452863353;PAX3,7:0.737948671584;EN1,2:0.724934472606;GFI1B:0.723154958952;ZNF143:0.681420339247;GZF1:0.657519405889;SOX17:0.642109026414;NRF1:0.584521376513;T:0.582326872584;YY1:0.550275450567;HBP1_HMGB_SSRP1_UBTF:0.548274392951;ELK1,4_GABP{A,B1}:0.543008316039;HES1:0.54232371422;PBX1:0.535380569614;ONECUT1,2:0.531789176807;POU2F1..3:0.530729642103;SPZ1:0.529887274459;HOX{A5,B5}:0.522148767923;UFEwm:0.470432393341;FOXD3:0.463618101567;ZIC1..3:0.43686748303;RXR{A,B,G}:0.400019746213;AHR_ARNT_ARNT2:0.394111890587;NANOG{mouse}:0.380080127144;PRRX1,2:0.378771519768;XBP1:0.366522793361;XCPE1{core}:0.344591610622;MZF1:0.344167918721;PITX1..3:0.338527826877;PAX4:0.336451427635;TEAD1:0.318567368327;KLF4:0.310115052244;BACH2:0.303968751187;BREu{core}:0.301794605291;TAL1_TCF{3,4,12}:0.276322199195;PAX1,9:0.276176376378;TFAP2{A,C}:0.271191552636;NFIX:0.233687351837;AIRE:0.222694578108;NKX6-1,2:0.219129674771;LEF1_TCF7_TCF7L1,2:0.208184252049;NKX2-3_NKX2-5:0.208121100242;FOS_FOS{B,L1}_JUN{B,D}:0.200447486997;PAX5:0.189610877809;AR:0.185959021643;NR1H4:0.180111745285;FOXP1:0.178146598319;PRDM1:0.17058378757;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.168108355693;NR5A1,2:0.152657720689;TLX1..3_NFIC{dimer}:0.148121690691;TFAP4:0.146625939149;TBX4,5:0.136871269402;NKX3-2:0.130806531005;bHLH_family:0.129930846605;CREB1:0.122647677122;CEBPA,B_DDIT3:0.102670741473;MYBL2:0.099601770375;NKX2-1,4:0.0961489363831;ZBTB16:0.085591269858;CDC5L:0.081903253721;TP53:0.0791332718203;HOX{A4,D4}:0.0645289564368;GCM1,2:0.0490320575131;STAT5{A,B}:0.0457150051;HIC1:0.0435328629813;EVI1:0.0405867977815;NFE2L2:0.0399095867708;POU3F1..4:0.0397545477187;FOXL1:0.0352278166727;LHX3,4:0.0350950037743;ALX1:0.0222128317813;TEF:0.019528061077;SOX{8,9,10}:0.0172752246972;GATA4:0.00859048165708;NFE2L1:0.00620360277469;HLF:0.00332701553886;SRF:-0.00510209697104;TFAP2B:-0.00562373423941;CRX:-0.0156575287286;CDX1,2,4:-0.019110834766;GTF2I:-0.0287078963057;ELF1,2,4:-0.0311271575403;NANOG:-0.0387152231652;ESR1:-0.0420796113886;FOSL2:-0.0539508392749;STAT1,3:-0.0704702340037;HNF1A:-0.0806488397988;HIF1A:-0.0825895524006;RXRA_VDR{dimer}:-0.0842456339039;TGIF1:-0.08647389092;NFATC1..3:-0.0987524864028;HNF4A_NR2F1,2:-0.104671315492;ATF6:-0.105376596928;IKZF1:-0.12286943148;IKZF2:-0.123748885736;ZFP161:-0.126566878463;FOXQ1:-0.147191870694;NFE2:-0.149162096347;VSX1,2:-0.153807953071;GTF2A1,2:-0.158682318123;SOX5:-0.162086279596;NR6A1:-0.164430655922;FOX{I1,J2}:-0.179739096432;HSF1,2:-0.189661807421;ZBTB6:-0.207081238588;DBP:-0.210074169771;MTF1:-0.238923961135;PATZ1:-0.239542948555;HOX{A6,A7,B6,B7}:-0.240247046289;RFX1:-0.254022300936;TBP:-0.254181724434;FOXA2:-0.255126144534;RFX2..5_RFXANK_RFXAP:-0.272206668643;POU5F1:-0.293227319276;RUNX1..3:-0.295836290275;MEF2{A,B,C,D}:-0.310581609822;TFCP2:-0.313933518883;ATF4:-0.317982215651;OCT4_SOX2{dimer}:-0.318115532225;SP1:-0.324046624919;NFKB1_REL_RELA:-0.329899606223;MED-1{core}:-0.337579896277;ARID5B:-0.340710911285;ESRRA:-0.344124435043;HAND1,2:-0.345014386414;SPI1:-0.348146370654;GATA6:-0.349214122623;ZNF384:-0.353315181513;DMAP1_NCOR{1,2}_SMARC:-0.366101072889;FOXM1:-0.384346910752;REST:-0.384917352692;ATF5_CREB3:-0.398347145734;EGR1..3:-0.403973340842;MTE{core}:-0.408874346677;NHLH1,2:-0.44698601003;MYFfamily:-0.471724613346;POU6F1:-0.479805279043;STAT2,4,6:-0.481144585739;MAZ:-0.483317563784;SOX2:-0.490892871926;JUN:-0.4928227733;ATF2:-0.499233146332;RREB1:-0.506068393302;ADNP_IRX_SIX_ZHX:-0.506346912117;SPIB:-0.508138238748;GLI1..3:-0.510132762711;CUX2:-0.51346621633;PPARG:-0.519033138202;PAX2:-0.523060186011;ETS1,2:-0.52525855483;ZNF423:-0.562761491839;EBF1:-0.563749639814;ZNF148:-0.587840840186;BPTF:-0.607276626056;MAFB:-0.608721423021;FOXO1,3,4:-0.647267734395;FOX{F1,F2,J1}:-0.694506320343;HMGA1,2:-0.695818156789;SMAD1..7,9:-0.704743582173;EP300:-0.713722242241;RBPJ:-0.757716736918;SNAI1..3:-0.758394277942;HMX1:-0.764299589795;FOXN1:-0.772269338774;IRF7:-0.776045695487;PAX6:-0.820834342268;IRF1,2:-0.858162864979;MYOD1:-0.874294329367;NFIL3:-0.890267151939;FOXP3:-0.894624653839;ZEB1:-0.9061851099;LMO2:-0.952043320263;RORA:-0.978261796982;SREBF1,2:-1.04213168879;FOX{D1,D2}:-1.12688877085;TLX2:-1.48108567146 | |top_motifs=TFDP1:1.67595613984;PAX8:1.52957468842;NKX3-1:1.52211650036;GFI1:1.26125689755;E2F1..5:1.26037034626;NR3C1:0.989433927156;NFY{A,B,C}:0.969734912176;POU1F1:0.956314739142;NKX2-2,8:0.948645997771;TOPORS:0.863409971478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.848443719654;MYB:0.842195534786;ZNF238:0.835710371665;PDX1:0.792172630582;ALX4:0.76707529735;HOXA9_MEIS1:0.757452863353;PAX3,7:0.737948671584;EN1,2:0.724934472606;GFI1B:0.723154958952;ZNF143:0.681420339247;GZF1:0.657519405889;SOX17:0.642109026414;NRF1:0.584521376513;T:0.582326872584;YY1:0.550275450567;HBP1_HMGB_SSRP1_UBTF:0.548274392951;ELK1,4_GABP{A,B1}:0.543008316039;HES1:0.54232371422;PBX1:0.535380569614;ONECUT1,2:0.531789176807;POU2F1..3:0.530729642103;SPZ1:0.529887274459;HOX{A5,B5}:0.522148767923;UFEwm:0.470432393341;FOXD3:0.463618101567;ZIC1..3:0.43686748303;RXR{A,B,G}:0.400019746213;AHR_ARNT_ARNT2:0.394111890587;NANOG{mouse}:0.380080127144;PRRX1,2:0.378771519768;XBP1:0.366522793361;XCPE1{core}:0.344591610622;MZF1:0.344167918721;PITX1..3:0.338527826877;PAX4:0.336451427635;TEAD1:0.318567368327;KLF4:0.310115052244;BACH2:0.303968751187;BREu{core}:0.301794605291;TAL1_TCF{3,4,12}:0.276322199195;PAX1,9:0.276176376378;TFAP2{A,C}:0.271191552636;NFIX:0.233687351837;AIRE:0.222694578108;NKX6-1,2:0.219129674771;LEF1_TCF7_TCF7L1,2:0.208184252049;NKX2-3_NKX2-5:0.208121100242;FOS_FOS{B,L1}_JUN{B,D}:0.200447486997;PAX5:0.189610877809;AR:0.185959021643;NR1H4:0.180111745285;FOXP1:0.178146598319;PRDM1:0.17058378757;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.168108355693;NR5A1,2:0.152657720689;TLX1..3_NFIC{dimer}:0.148121690691;TFAP4:0.146625939149;TBX4,5:0.136871269402;NKX3-2:0.130806531005;bHLH_family:0.129930846605;CREB1:0.122647677122;CEBPA,B_DDIT3:0.102670741473;MYBL2:0.099601770375;NKX2-1,4:0.0961489363831;ZBTB16:0.085591269858;CDC5L:0.081903253721;TP53:0.0791332718203;HOX{A4,D4}:0.0645289564368;GCM1,2:0.0490320575131;STAT5{A,B}:0.0457150051;HIC1:0.0435328629813;EVI1:0.0405867977815;NFE2L2:0.0399095867708;POU3F1..4:0.0397545477187;FOXL1:0.0352278166727;LHX3,4:0.0350950037743;ALX1:0.0222128317813;TEF:0.019528061077;SOX{8,9,10}:0.0172752246972;GATA4:0.00859048165708;NFE2L1:0.00620360277469;HLF:0.00332701553886;SRF:-0.00510209697104;TFAP2B:-0.00562373423941;CRX:-0.0156575287286;CDX1,2,4:-0.019110834766;GTF2I:-0.0287078963057;ELF1,2,4:-0.0311271575403;NANOG:-0.0387152231652;ESR1:-0.0420796113886;FOSL2:-0.0539508392749;STAT1,3:-0.0704702340037;HNF1A:-0.0806488397988;HIF1A:-0.0825895524006;RXRA_VDR{dimer}:-0.0842456339039;TGIF1:-0.08647389092;NFATC1..3:-0.0987524864028;HNF4A_NR2F1,2:-0.104671315492;ATF6:-0.105376596928;IKZF1:-0.12286943148;IKZF2:-0.123748885736;ZFP161:-0.126566878463;FOXQ1:-0.147191870694;NFE2:-0.149162096347;VSX1,2:-0.153807953071;GTF2A1,2:-0.158682318123;SOX5:-0.162086279596;NR6A1:-0.164430655922;FOX{I1,J2}:-0.179739096432;HSF1,2:-0.189661807421;ZBTB6:-0.207081238588;DBP:-0.210074169771;MTF1:-0.238923961135;PATZ1:-0.239542948555;HOX{A6,A7,B6,B7}:-0.240247046289;RFX1:-0.254022300936;TBP:-0.254181724434;FOXA2:-0.255126144534;RFX2..5_RFXANK_RFXAP:-0.272206668643;POU5F1:-0.293227319276;RUNX1..3:-0.295836290275;MEF2{A,B,C,D}:-0.310581609822;TFCP2:-0.313933518883;ATF4:-0.317982215651;OCT4_SOX2{dimer}:-0.318115532225;SP1:-0.324046624919;NFKB1_REL_RELA:-0.329899606223;MED-1{core}:-0.337579896277;ARID5B:-0.340710911285;ESRRA:-0.344124435043;HAND1,2:-0.345014386414;SPI1:-0.348146370654;GATA6:-0.349214122623;ZNF384:-0.353315181513;DMAP1_NCOR{1,2}_SMARC:-0.366101072889;FOXM1:-0.384346910752;REST:-0.384917352692;ATF5_CREB3:-0.398347145734;EGR1..3:-0.403973340842;MTE{core}:-0.408874346677;NHLH1,2:-0.44698601003;MYFfamily:-0.471724613346;POU6F1:-0.479805279043;STAT2,4,6:-0.481144585739;MAZ:-0.483317563784;SOX2:-0.490892871926;JUN:-0.4928227733;ATF2:-0.499233146332;RREB1:-0.506068393302;ADNP_IRX_SIX_ZHX:-0.506346912117;SPIB:-0.508138238748;GLI1..3:-0.510132762711;CUX2:-0.51346621633;PPARG:-0.519033138202;PAX2:-0.523060186011;ETS1,2:-0.52525855483;ZNF423:-0.562761491839;EBF1:-0.563749639814;ZNF148:-0.587840840186;BPTF:-0.607276626056;MAFB:-0.608721423021;FOXO1,3,4:-0.647267734395;FOX{F1,F2,J1}:-0.694506320343;HMGA1,2:-0.695818156789;SMAD1..7,9:-0.704743582173;EP300:-0.713722242241;RBPJ:-0.757716736918;SNAI1..3:-0.758394277942;HMX1:-0.764299589795;FOXN1:-0.772269338774;IRF7:-0.776045695487;PAX6:-0.820834342268;IRF1,2:-0.858162864979;MYOD1:-0.874294329367;NFIL3:-0.890267151939;FOXP3:-0.894624653839;ZEB1:-0.9061851099;LMO2:-0.952043320263;RORA:-0.978261796982;SREBF1,2:-1.04213168879;FOX{D1,D2}:-1.12688877085;TLX2:-1.48108567146 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11454-119A5;search_select_hide=table117:FF:11454-119A5 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Fibroblast - Dermal, donor5 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12055 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12055
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12055
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.716 |
| 10 | 10 | 0.178 |
| 100 | 100 | 0.573 |
| 101 | 101 | 0.608 |
| 102 | 102 | 0.445 |
| 103 | 103 | 0.0276 |
| 104 | 104 | 0.792 |
| 105 | 105 | 0.575 |
| 106 | 106 | 0.00355 |
| 107 | 107 | 0.194 |
| 108 | 108 | 0.225 |
| 109 | 109 | 0.888 |
| 11 | 11 | 0.973 |
| 110 | 110 | 0.421 |
| 111 | 111 | 0.948 |
| 112 | 112 | 0.0535 |
| 113 | 113 | 0.0106 |
| 114 | 114 | 0.228 |
| 115 | 115 | 0.866 |
| 116 | 116 | 0.389 |
| 117 | 117 | 0.8 |
| 118 | 118 | 0.683 |
| 119 | 119 | 0.0973 |
| 12 | 12 | 0.512 |
| 120 | 120 | 0.178 |
| 121 | 121 | 0.655 |
| 122 | 122 | 0.119 |
| 123 | 123 | 0.402 |
| 124 | 124 | 0.156 |
| 125 | 125 | 0.654 |
| 126 | 126 | 0.841 |
| 127 | 127 | 0.605 |
| 128 | 128 | 0.0322 |
| 129 | 129 | 0.0943 |
| 13 | 13 | 0.937 |
| 130 | 130 | 0.00733 |
| 131 | 131 | 0.53 |
| 132 | 132 | 0.865 |
| 133 | 133 | 0.989 |
| 134 | 134 | 0.517 |
| 135 | 135 | 0.0492 |
| 136 | 136 | 0.237 |
| 137 | 137 | 0.0455 |
| 138 | 138 | 0.0972 |
| 139 | 139 | 3.41692e-5 |
| 14 | 14 | 0.0827 |
| 140 | 140 | 0.8 |
| 141 | 141 | 0.791 |
| 142 | 142 | 0.541 |
| 143 | 143 | 0.59 |
| 144 | 144 | 0.519 |
| 145 | 145 | 0.425 |
| 146 | 146 | 0.707 |
| 147 | 147 | 0.457 |
| 148 | 148 | 0.412 |
| 149 | 149 | 0.236 |
| 15 | 15 | 0.264 |
| 150 | 150 | 0.79 |
| 151 | 151 | 0.207 |
| 152 | 152 | 0.13 |
| 153 | 153 | 0.47 |
| 154 | 154 | 0.457 |
| 155 | 155 | 0.0536 |
| 156 | 156 | 0.547 |
| 157 | 157 | 0.0976 |
| 158 | 158 | 0.0288 |
| 159 | 159 | 0.0319 |
| 16 | 16 | 0.635 |
| 160 | 160 | 0.479 |
| 161 | 161 | 0.879 |
| 162 | 162 | 0.677 |
| 163 | 163 | 0.563 |
| 164 | 164 | 0.773 |
| 165 | 165 | 0.138 |
| 166 | 166 | 0.958 |
| 167 | 167 | 0.643 |
| 168 | 168 | 0.48 |
| 169 | 169 | 0.0911 |
| 17 | 17 | 0.404 |
| 18 | 18 | 0.686 |
| 19 | 19 | 0.777 |
| 2 | 2 | 0.51 |
| 20 | 20 | 0.196 |
| 21 | 21 | 0.137 |
| 22 | 22 | 0.268 |
| 23 | 23 | 0.036 |
| 24 | 24 | 0.656 |
| 25 | 25 | 0.775 |
| 26 | 26 | 0.328 |
| 27 | 27 | 0.521 |
| 28 | 28 | 0.334 |
| 29 | 29 | 0.916 |
| 3 | 3 | 0.722 |
| 30 | 30 | 0.403 |
| 31 | 31 | 0.451 |
| 32 | 32 | 0.816 |
| 33 | 33 | 0.478 |
| 34 | 34 | 0.327 |
| 35 | 35 | 0.477 |
| 36 | 36 | 0.664 |
| 37 | 37 | 0.545 |
| 38 | 38 | 0.345 |
| 39 | 39 | 0.725 |
| 4 | 4 | 0.11 |
| 40 | 40 | 0.48 |
| 41 | 41 | 0.256 |
| 42 | 42 | 0.865 |
| 43 | 43 | 0.22 |
| 44 | 44 | 0.628 |
| 45 | 45 | 0.045 |
| 46 | 46 | 0.486 |
| 47 | 47 | 0.954 |
| 48 | 48 | 0.618 |
| 49 | 49 | 0.263 |
| 5 | 5 | 0.122 |
| 50 | 50 | 0.571 |
| 51 | 51 | 0.61 |
| 52 | 52 | 0.186 |
| 53 | 53 | 0.341 |
| 54 | 54 | 0.608 |
| 55 | 55 | 0.737 |
| 56 | 56 | 0.764 |
| 57 | 57 | 0.778 |
| 58 | 58 | 0.131 |
| 59 | 59 | 0.378 |
| 6 | 6 | 0.697 |
| 60 | 60 | 0.0331 |
| 61 | 61 | 0.989 |
| 62 | 62 | 0.243 |
| 63 | 63 | 0.975 |
| 64 | 64 | 0.708 |
| 65 | 65 | 0.155 |
| 66 | 66 | 0.0758 |
| 67 | 67 | 0.791 |
| 68 | 68 | 0.707 |
| 69 | 69 | 0.663 |
| 7 | 7 | 0.424 |
| 70 | 70 | 0.00671 |
| 71 | 71 | 0.983 |
| 72 | 72 | 0.176 |
| 73 | 73 | 0.501 |
| 74 | 74 | 0.225 |
| 75 | 75 | 0.473 |
| 76 | 76 | 0.955 |
| 77 | 77 | 0.777 |
| 78 | 78 | 0.71 |
| 79 | 79 | 0.696 |
| 8 | 8 | 0.81 |
| 80 | 80 | 0.0634 |
| 81 | 81 | 0.375 |
| 82 | 82 | 0.0081 |
| 83 | 83 | 0.213 |
| 84 | 84 | 0.967 |
| 85 | 85 | 0.013 |
| 86 | 86 | 0.464 |
| 87 | 87 | 0.129 |
| 88 | 88 | 0.322 |
| 89 | 89 | 0.169 |
| 9 | 9 | 0.692 |
| 90 | 90 | 0.627 |
| 91 | 91 | 0.46 |
| 92 | 92 | 0.252 |
| 93 | 93 | 0.724 |
| 94 | 94 | 0.951 |
| 95 | 95 | 0.242 |
| 96 | 96 | 0.303 |
| 97 | 97 | 0.88 |
| 98 | 98 | 0.225 |
| 99 | 99 | 0.0632 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12055
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
