FF:12174-128I5: Difference between revisions

Latest revision as of 18:32, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090325, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs12175
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005718

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12175		CAGE		DRX008054		DRR008926

Accession ID Hg19

Library id		BAM		CTSS
CNhs12175		DRZ000351		DRZ001736

Accession ID Hg38

Library id		BAM		CTSS
CNhs12175		DRZ011701		DRZ013086

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.12
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.22
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.146
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0758
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.314
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.333
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.415
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.419
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.699
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.235
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.265
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.33
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.558
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.135
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.477
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.198
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	1.026
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.146
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.508
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.262
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.184
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.201
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.042
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.793
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12175

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.51326e-5
MA0003.1	MA0003.1	0.628
MA0004.1	MA0004.1	0.335
MA0006.1	MA0006.1	0.364
MA0007.1	MA0007.1	0.613
MA0009.1	MA0009.1	0.772
MA0014.1	MA0014.1	0.768
MA0017.1	MA0017.1	0.0334
MA0018.2	MA0018.2	0.598
MA0019.1	MA0019.1	0.841
MA0024.1	MA0024.1	0.912
MA0025.1	MA0025.1	0.279
MA0027.1	MA0027.1	0.743
MA0028.1	MA0028.1	9.85153e-7
MA0029.1	MA0029.1	0.605
MA0030.1	MA0030.1	0.0084
MA0031.1	MA0031.1	0.0357
MA0035.2	MA0035.2	0.42
MA0038.1	MA0038.1	0.264
MA0039.2	MA0039.2	0.517
MA0040.1	MA0040.1	0.989
MA0041.1	MA0041.1	0.136
MA0042.1	MA0042.1	0.747
MA0043.1	MA0043.1	0.961
MA0046.1	MA0046.1	0.655
MA0047.2	MA0047.2	0.17
MA0048.1	MA0048.1	0.358
MA0050.1	MA0050.1	1.0818e-11
MA0051.1	MA0051.1	2.8725e-5
MA0052.1	MA0052.1	0.25
MA0055.1	MA0055.1	0.493
MA0057.1	MA0057.1	0.762
MA0058.1	MA0058.1	0.196
MA0059.1	MA0059.1	0.371
MA0060.1	MA0060.1	0.449
MA0061.1	MA0061.1	6.56473e-5
MA0062.2	MA0062.2	1.32625e-17
MA0065.2	MA0065.2	0.0332
MA0066.1	MA0066.1	0.644
MA0067.1	MA0067.1	0.554
MA0068.1	MA0068.1	0.0697
MA0069.1	MA0069.1	0.557
MA0070.1	MA0070.1	0.494
MA0071.1	MA0071.1	0.628
MA0072.1	MA0072.1	0.562
MA0073.1	MA0073.1	0.578
MA0074.1	MA0074.1	0.781
MA0076.1	MA0076.1	7.74685e-11
MA0077.1	MA0077.1	0.129
MA0078.1	MA0078.1	0.713
MA0079.2	MA0079.2	0.616
MA0080.2	MA0080.2	1.89346e-11
MA0081.1	MA0081.1	3.04906e-4
MA0083.1	MA0083.1	0.00756
MA0084.1	MA0084.1	0.295
MA0087.1	MA0087.1	0.164
MA0088.1	MA0088.1	0.127
MA0090.1	MA0090.1	4.28915e-5
MA0091.1	MA0091.1	0.719
MA0092.1	MA0092.1	0.86
MA0093.1	MA0093.1	0.387
MA0099.2	MA0099.2	1.07687e-6
MA0100.1	MA0100.1	0.189
MA0101.1	MA0101.1	0.0117
MA0102.2	MA0102.2	0.564
MA0103.1	MA0103.1	0.0033
MA0104.2	MA0104.2	0.1
MA0105.1	MA0105.1	5.78948e-7
MA0106.1	MA0106.1	0.443
MA0107.1	MA0107.1	0.00542
MA0108.2	MA0108.2	1.17452e-10
MA0111.1	MA0111.1	0.432
MA0112.2	MA0112.2	0.0891
MA0113.1	MA0113.1	0.959
MA0114.1	MA0114.1	0.0696
MA0115.1	MA0115.1	0.0804
MA0116.1	MA0116.1	2.1244e-5
MA0117.1	MA0117.1	0.653
MA0119.1	MA0119.1	0.41
MA0122.1	MA0122.1	0.51
MA0124.1	MA0124.1	0.821
MA0125.1	MA0125.1	0.979
MA0131.1	MA0131.1	0.0571
MA0135.1	MA0135.1	0.0349
MA0136.1	MA0136.1	5.77574e-18
MA0137.2	MA0137.2	0.949
MA0138.2	MA0138.2	0.734
MA0139.1	MA0139.1	0.193
MA0140.1	MA0140.1	0.25
MA0141.1	MA0141.1	0.91
MA0142.1	MA0142.1	0.226
MA0143.1	MA0143.1	0.923
MA0144.1	MA0144.1	0.568
MA0145.1	MA0145.1	0.726
MA0146.1	MA0146.1	0.155
MA0147.1	MA0147.1	0.12
MA0148.1	MA0148.1	0.676
MA0149.1	MA0149.1	0.104
MA0150.1	MA0150.1	0.181
MA0152.1	MA0152.1	0.184
MA0153.1	MA0153.1	0.0194
MA0154.1	MA0154.1	4.77458e-4
MA0155.1	MA0155.1	0.624
MA0156.1	MA0156.1	6.68598e-16
MA0157.1	MA0157.1	0.106
MA0159.1	MA0159.1	0.0367
MA0160.1	MA0160.1	0.416
MA0162.1	MA0162.1	0.883
MA0163.1	MA0163.1	1.3282e-9
MA0164.1	MA0164.1	0.63
MA0258.1	MA0258.1	0.227
MA0259.1	MA0259.1	0.393

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12175

Novel motif	Logo	P-value
1	1	0.0885
10	10	0.0222
100	100	0.671
101	101	0.252
102	102	0.956
103	103	0.0556
104	104	0.163
105	105	0.507
106	106	0.948
107	107	0.183
108	108	0.215
109	109	0.0833
11	11	0.127
110	110	0.272
111	111	0.0713
112	112	0.426
113	113	0.027
114	114	0.515
115	115	0.972
116	116	0.734
117	117	0.00109
118	118	0.14
119	119	0.71
12	12	0.919
120	120	0.709
121	121	0.308
122	122	0.458
123	123	0.0579
124	124	0.082
125	125	0.203
126	126	0.425
127	127	0.614
128	128	0.377
129	129	0.996
13	13	0.426
130	130	0.326
131	131	0.54
132	132	0.294
133	133	0.0125
134	134	0.838
135	135	0.768
136	136	0.449
137	137	0.142
138	138	0.381
139	139	0.43
14	14	0.398
140	140	0.273
141	141	0.225
142	142	0.28
143	143	0.151
144	144	0.693
145	145	0.519
146	146	0.0971
147	147	0.0527
148	148	0.405
149	149	0.338
15	15	0.119
150	150	0.621
151	151	0.691
152	152	0.6
153	153	0.854
154	154	0.914
155	155	0.00728
156	156	0.342
157	157	0.285
158	158	0.0869
159	159	0.172
16	16	0.952
160	160	0.571
161	161	0.0787
162	162	0.53
163	163	0.178
164	164	0.412
165	165	0.439
166	166	0.498
167	167	0.102
168	168	0.0981
169	169	0.565
17	17	0.797
18	18	0.713
19	19	0.524
2	2	0.793
20	20	0.511
21	21	0.798
22	22	0.778
23	23	0.382
24	24	0.671
25	25	0.0268
26	26	0.382
27	27	0.21
28	28	0.423
29	29	0.0537
3	3	0.0607
30	30	0.326
31	31	0.714
32	32	0.248
33	33	0.444
34	34	0.909
35	35	0.153
36	36	0.0256
37	37	0.123
38	38	0.495
39	39	0.341
4	4	0.689
40	40	0.218
41	41	0.169
42	42	0.134
43	43	0.199
44	44	0.389
45	45	0.966
46	46	0.209
47	47	0.0772
48	48	0.167
49	49	0.134
5	5	0.443
50	50	0.975
51	51	0.513
52	52	0.371
53	53	0.474
54	54	0.813
55	55	0.119
56	56	0.791
57	57	0.492
58	58	0.025
59	59	0.381
6	6	0.655
60	60	0.752
61	61	0.0285
62	62	0.037
63	63	0.837
64	64	0.415
65	65	0.956
66	66	0.861
67	67	0.278
68	68	0.882
69	69	0.874
7	7	0.153
70	70	0.258
71	71	0.0478
72	72	0.0204
73	73	0.638
74	74	0.602
75	75	0.0044
76	76	0.0387
77	77	0.469
78	78	0.126
79	79	0.446
8	8	0.855
80	80	0.00457
81	81	0.143
82	82	0.248
83	83	0.751
84	84	0.341
85	85	0.946
86	86	0.0801
87	87	0.107
88	88	0.655
89	89	0.809
9	9	0.625
90	90	0.0265
91	91	0.88
92	92	0.663
93	93	0.845
94	94	0.0496
95	95	0.00516
96	96	0.781
97	97	0.446
98	98	0.279
99	99	0.0319

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12175

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005718
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000236,CL:0000838,CL:0002031,CL:0000037,CL:0000566,CL:0000837,CL:0000826,CL:0000051
+|accession_numbers=CAGE;DRX008054;DRR008926;DRZ000351;DRZ001736;DRZ011701;DRZ013086
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000025
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.57!368.36!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.46!285.88!SPIB;;chr2:100759010..100759035,-!p1@AFF3!2.44!276.67!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.31!203.80!POU2AF1;;chr2:231090433..231090469,+!p1@SP140!2.08!118.12!SP140;;chr2:100759037..100759058,-!p2@AFF3!2.07!117.32!AFF3;;chr11:47400078..47400106,-!p1@SPI1!2.05!111.31!SPI1;;chr6:391743..391759,+!p1@IRF4!2.03!105.70!IRF4;;chr2:231090471..231090504,+!p2@SP140!1.99!97.70!SP140;;chr6:91006518..91006570,-!p1@BACH2!1.98!209.41!BACH2;;chr17:38020392..38020477,-!p1@IKZF3!1.95!87.69!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.81!468.46!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.80!61.66!PLEK;;chr2:100758991..100759009,-!p3@AFF3!1.79!60.46!AFF3;;chr3:71355163..71355209,-!p5@FOXP1!1.76!77.68!FOXP1;;chr6:91006575..91006602,-!p2@BACH2!1.67!67.27!BACH2;;chr3:32023232..32023273,+!p1@ZNF860!1.60!55.25!ZNF860;;chr17:38020557..38020572,-!p4@IKZF3!1.59!37.64!IKZF3;;chr7:50344251..50344288,+!p3@IKZF1!1.57!36.44!IKZF1;;chr19:16435625..16435682,+!p1@KLF2!1.56!1083.87!KLF2;;chr8:86099884..86099918,+!p4@E2F5!1.56!35.23!E2F5;;chr2:60781201..60781258,-!p3@BCL11A!1.55!34.43!BCL11A;;chr2:60780607..60780624,-!p2@BCL11A!1.54!99.70!BCL11A;;chr7:50343634..50343717,+!p2@IKZF1!1.54!33.63!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.53!48.45!LYL1;;chr20:56195474..56195506,-!p1@ZBP1!1.53!33.23!ZBP1;;chr8:86089627..86089653,+!p3@E2F5!1.45!30.83!E2F5;;chr7:50344289..50344323,+!p1@IKZF1!1.43!26.03!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.43!26.03!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.42!25.22!KDM5D;;chr17:38020516..38020544,-!p5@IKZF3!1.41!24.42!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.39!146.54!ELF1;;chr2:60778035..60778060,-!p4@BCL11A!1.38!27.63!BCL11A;;chr17:37934204..37934241,-!p3@IKZF3!1.38!23.22!IKZF3;;chr5:158526756..158526797,-!p3@EBF1!1.38!23.22!EBF1;;chr7:64838786..64838809,+!p2@ZNF92!1.36!120.12!ZNF92;;chr7:50348268..50348366,+!p4@IKZF1!1.35!21.22!IKZF1;;chr3:71409904..71409927,-!p46@FOXP1!1.33!20.42!FOXP1;;chr5:88179017..88179046,-!p2@MEF2C!1.32!78.48!MEF2C;;chr9:37034186..37034216,-!p2@PAX5!1.31!19.62!PAX5;;chr14:69262947..69262986,-!p3@ZFP36L1!1.29!22.42!ZFP36L1;;chr18:52989031..52989079,-!p2@TCF4!1.25!38.84!TCF4;;chr4:185395633..185395651,-!p2@IRF2!1.25!26.83!IRF2;;chr2:231090344..231090361,-!p3@SP110!1.25!16.82!SP110;;chr16:85936412..85936431,+!p2@IRF8!1.25!16.82!IRF8;;chr10:94449703..94449718,+!p1@HHEX!1.24!62.06!HHEX;;chr10:94449675..94449694,+!p2@HHEX!1.24!43.24!HHEX;;chr8:86089531..86089544,+!p7@E2F5!1.23!16.02!E2F5;;chr1:25256756..25256774,-!p1@RUNX3!1.22!28.83!RUNX3;;chr19:13213704..13213726,-!p3@LYL1!1.22!20.42!LYL1;;chr3:71631151..71631194,-!p15@FOXP1!1.22!17.62!FOXP1;;chr11:128563948..128564003,+!p1@FLI1!1.21!178.18!FLI1;;chr1:151319654..151319698,-!p2@RFX5!1.21!33.23!RFX5;;chr4:185395590..185395627,-!p3@IRF2!1.20!18.42!IRF2;;chr19:42636586..42636607,-!p1@POU2F2!1.19!39.64!POU2F2;;chr20:50159198..50159299,-!p1@NFATC2!1.18!20.42!NFATC2;;chr3:18486354..18486377,-!p2@SATB1!1.16!16.82!SATB1;;chr5:88120151..88120177,-!p6@MEF2C!1.16!13.61!MEF2C;;chr14:75988771..75988826,+!p1@BATF!1.15!17.62!BATF;;chr9:117150254..117150271,-!p1@AKNA!1.14!34.83!AKNA;;chr19:36391434..36391450,-!p1@NFKBID!1.13!24.82!NFKBID;;chr6:91006503..91006517,-!p3@BACH2!1.11!12.01!BACH2;;chr19:45579725..45579743,-!p1@ZNF296!1.10!52.05!ZNF296;;chr2:100759060..100759073,-!p8@AFF3!1.10!11.61!AFF3;;chr17:38020481..38020506,-!p7@IKZF3!1.10!11.61!IKZF3;;chr19:36204309..36204335,+!p1@ZBTB32!1.10!11.61!ZBTB32;;chr4:57522513..57522548,-!p4@HOPX!1.09!11.21!HOPX;;chr11:47400062..47400077,-!p2@SPI1!1.09!11.21!SPI1;;chrX:106960221..106960236,-!p3@TSC22D3!1.06!29.23!TSC22D3;;chr9:37027156..37027193,-!p4@PAX5!1.06!10.41!PAX5;;chr7:77469439..77469459,+!p6@PHTF2!1.06!10.41!PHTF2;;chr3:18487057..18487105,-!p4@SATB1!1.06!10.41!SATB1;;chr2:61108695..61108753,+!p1@REL!1.05!70.87!REL;;chr19:20748574..20748599,-!p1@ZNF737!1.04!60.06!ZNF737;;chr6:157098579..157098634,+!p4@ARID1B!1.03!22.02!ARID1B;;chr5:158526709..158526741,-!p7@EBF1!1.03!9.61!EBF1;;chr19:19779619..19779670,+!p1@ZNF101!1.02!27.23!ZNF101;;chr17:38020607..38020621,-!p9@IKZF3!1.01!9.21!IKZF3;;chr2:100759076..100759088,-!p10@AFF3!1.01!9.21!AFF3;;chr7:77428066..77428132,+!p2@PHTF2!1.00!59.26!PHTF2;;chr17:45810594..45810608,+!p1@TBX21!0.99!8.81!TBX21;;chrY:21906761..21906810,-!p2@KDM5D!0.99!8.81!KDM5D;;chrX:106960285..106960299,-!p1@TSC22D3!0.97!228.23!TSC22D3;;chrX:106960180..106960197,-!p2@TSC22D3!0.96!32.03!TSC22D3;;chr2:61108650..61108687,+!p2@REL!0.95!40.04!REL;;chr19:11959532..11959593,+!p1@ZNF439!0.95!31.63!ZNF439;;chr1:41174988..41175047,+!p4@NFYC!0.95!21.62!NFYC;;chr6:144385698..144385742,-!p2@PLAGL1!0.95!9.61!PLAGL1;;chr6:41701898..41701939,-!p5@TFEB!0.95!8.01!TFEB;;chr2:145277640..145277771,-!p1@ZEB2!0.94!106.51!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!0.94!28.43!RUNX1;;chr19:58220517..58220583,-!p1@ZNF154!0.94!25.22!ZNF154;;chr1:158979686..158979745,+!p1@IFI16!0.93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DM2A!0.58!25.63!KDM2A;;chr19:44507091..44507163,+!p1@ZNF230!0.58!14.81!ZNF230;;chr7:99156212..99156244,+!p3@ZNF655!0.58!12.81!ZNF655;;chr2:148778973..148779035,+!p3@MBD5!0.58!8.41!MBD5;;chr19:47616992..47617011,-!p4@ZC3H4!0.58!6.81!ZC3H4;;chr19:36980455..36980469,-!p2@ZNF566!0.58!6.81!ZNF566;;chr8:125985531..125985571,+!p1@ZNF572!0.58!6.41!ZNF572;;chr4:146859626..146859669,-!p2@ZNF827!0.58!4.40!ZNF827;;chr8:128747661..128747703,+!p6@MYC!0.58!4.00!MYC;;chr1:151319318..151319338,-!p3@RFX5!0.58!3.60!RFX5;;chr6:41700616..41700664,-!p8@TFEB!0.58!2.80!TFEB;;chr7:97840743..97840786,+!p1@BHLHA15!0.58!2.80!BHLHA15;;chr3:114173720..114173794,-!p6@ZBTB20!0.58!2.80!ZBTB20;;chr3:141105235..141105307,+!p7@ZBTB38!0.58!2.80!ZBTB38;;chr18:42260861..42260882,+!p5@SETBP1!0.58!2.80!SETBP1;;chr7:28220354..28220441,-!p1@JAZF1!0.57!52.85!JAZF1;;chr19:19843900..19843928,-!p1@ZNF14!0.57!16.42!ZNF14;;chr6:28092375..28092412,+!p1@ZSCAN16!0.57!13.61!ZSCAN16;;chr19:37709076..37709154,+!p1@ZNF383!0.57!10.81!ZNF383;;chr19:37341752..37341816,+!p1@ZNF345!0.57!9.61!ZNF345;;chr17:41322332..41322351,-!p4@BRCA1!0.57!7.61!BRCA1;;chr10:43932296..43932360,+!p1@ZNF487P!0.57!6.41!ZNF487P;;chr13:115079801..115079832,+!p2@CHAMP1!0.57!5.21!CHAMP1;;chr19:12444491..12444517,-!p4@ZNF563!0.57!4.00!ZNF563;;chr12:54785054..54785072,-!p4@ZNF385A!0.57!3.20!ZNF385A;;chr16:1464688..1464728,-!p1@UNKL!0.56!22.42!UNKL;;chr10:104155480..104155534,+!p2@NFKB2!0.56!20.82!NFKB2;;chr19:58400372..58400411,-!p1@ZNF814!0.56!16.82!ZNF814;;chr17:42298615..42298692,-!p2@UBTF!0.56!16.42!UBTF;;chr19:58459047..58459083,-!p1@ZNF256!0.56!15.62!ZNF256;;chr13:74708029..74708077,-!p2@KLF12!0.56!8.81!KLF12;;chr5:158526917..158526932,-!p1@EBF1!0.56!7.61!EBF1;;chr18:42260059..42260132,+!p1@SETBP1!0.56!4.80!SETBP1;;chr3:14990132..14990175,+!p5@NR2C2!0.56!3.60!NR2C2;;chr4:81104958..81104981,+!p5@PRDM8!0.56!3.20!PRDM8;;chr19:19779686..19779697,+!p3@ZNF101!0.56!3.20!ZNF101;;chr7:86781734..86781777,+!p1@DMTF1!0.55!58.86!DMTF1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.55!49.65!MIS18BP1;;chr2:113033164..113033219,+!p1@ZC3H6!0.55!26.83!ZC3H6;;chr19:12175535..12175554,+!p1@ZNF844!0.55!17.22!ZNF844;;chr19:9546227..9546257,-!p2@ZNF266!0.55!16.02!ZNF266;;chr19:20959098..20959117,+!p1@ZNF66P!0.55!12.81!ZNF66P;;chr19:37407212..37407280,+!p1@ZNF568!0.55!12.41!ZNF568;;chr15:67357992..67358009,+!p3@SMAD3!0.55!7.21!SMAD3;;chr12:72058060..72058101,+!p5@THAP2!0.55!7.21!THAP2;;chr13:74708372..74708409,-!p4@KLF12!0.55!6.81!KLF12;;chr2:208030886..208030917,-!p4@KLF7!0.55!5.61!KLF7;;chr4:87857433..87857472,+!p9@AFF1!0.55!5.21!AFF1;;chr19:56904947..56904975,-!p2@ZNF582!0.55!4.80!ZNF582;;chr19:37464063..37464127,+!p2@ZNF568!0.55!3.60!ZNF568;;chrX:131624020..131624048,-!p9@MBNL3!0.55!3.20!MBNL3;;chr20:46130846..46130869,+!p5@NCOA3!0.55!2.80!NCOA3;;chr10:38299546..38299686,+!p1@ZNF33A!0.54!45.24!ZNF33A;;chr19:36705998..36706021,+!p2@ZNF146!0.54!44.84!ZNF146;;chr16:3355472..3355514,+!p1@ZNF75A!0.54!43.24!ZNF75A;;chr14:58765217..58765301,+!p1@ARID4A!0.54!28.03!ARID4A;;chr19:21106049..21106072,+!p1@ZNF85!0.54!16.82!ZNF85;;chr1:8763440..8763460,-!p2@RERE!0.54!15.62!RERE;;chr19:58258202..58258226,+!p3@ZNF776!0.54!14.41!ZNF776;;chr10:43134001..43134026,-!p1@ZNF33B!0.54!13.61!ZNF33B;;chr19:23870007..23870022,-!p2@ZNF675!0.54!9.61!ZNF675;;chr4:87857474..87857489,+!p7@AFF1!0.54!4.80!AFF1;;chr18:42260030..42260055,+!p3@SETBP1!0.54!3.20!SETBP1;;chr13:74707894..74707947,-!p6@KLF12!0.54!2.80!KLF12;;chr14:64971346..64971357,-!p9@ZBTB25!0.54!2.80!ZBTB25;;chr11:10879593..10879620,-!p1@ZBED5!0.53!95.69!ZBED5;;chr19:21324829..21324855,+!p1@ZNF431!0.53!48.45!ZNF431;;chr12:498415..498492,-!p1@KDM5A!0.53!34.03!KDM5A;;chr19:21950362..21950388,-!p1@ZNF100!0.53!27.23!ZNF100;;chr5:133450365..133450444,+!p1@TCF7!0.53!13.61!TCF7;;chr19:52800410..52800454,+!p1@ZNF480!0.53!13.21!ZNF480;;chr21:27107672..27107698,+!p2@GABPA!0.53!12.41!GABPA;;chr17:11900745..11900804,-!p1@ZNF18!0.53!11.21!ZNF18;;chr9:3525867..3525902,-!p3@RFX3!0.53!10.01!RFX3;;chr19:58446721..58446779,-!p1@ZNF418!0.53!8.01!ZNF418;;chr15:50647347..50647366,-!p3@GABPB1!0.53!7.21!GABPB1;;chr7:21467642..21467671,+!p2@SP4!0.53!6.41!SP4;;chr19:12512062..12512094,-!p1@ZNF799!0.53!5.61!ZNF799;;chr2:61108771..61108789,+!p4@REL!0.53!4.00!REL;;chr5:124082580..124082603,-!p4@ZNF608!0.53!2.80!ZNF608;;chr5:142782862..142782881,-!p11@NR3C1!0.53!2.40!NR3C1;;chr6:41691289..41691312,-!p9@TFEB!0.53!2.40!TFEB;;chr6:41701557..41701578,-!p3@TFEB!0.53!2.40!TFEB;;chr6:91006629..91006641,-!p4@BACH2!0.53!2.40!BACH2;;chr6:91006719..91006730,-!p5@BACH2!0.53!2.40!BACH2;;chr16:85936600..85936623,+!p4@IRF8!0.53!2.40!IRF8;;chr13:41593405..41593416,-!p9@ELF1!0.53!2.40!ELF1;;chr2:60780485..60780498,-!p12@BCL11A!0.53!2.40!BCL11A;;chr2:97202991..97203043,+!p3@ARID5A!0.53!2.40!ARID5A;;chr1:158978768..158978800,+!p8@IFI16!0.53!2.40!IFI16;;chr21:36421347..36421380,-!p8@RUNX1!0.53!2.40!RUNX1;;chr1:161015752..161015778,-!p2@USF1!0.52!34.83!USF1;;chr19:37064145..37064216,-!p1@ZNF529!0.52!24.82!ZNF529;;chr9:3525968..3526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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12175.12174-128I5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12175.12174-128I5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12175.12174-128I5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12175.12174-128I5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation2.CNhs12175.12174-128I5.hg38.nobarcode.ctss.bed.gz
 |id=FF:12174-128I5
 |is_a=EFO:0002091;;FF:0000025;;FF:0000210
 |is_obsolete=
+|library_id=CNhs12175
+|library_id_phase_based=2:CNhs12175
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12174
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12174
 |name=CD19+ B Cells (pluriselect), donor090325, donation2
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12175,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=128
 |rna_catalog_number=
@@ Line 58: / Line 79: @@
 |rna_weight_ug=2.44375
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12174-128I5;search_select_hide=table117:FF:12174-128I5
 }}

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Latest revision as of 18:32, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0