FF:11428-118G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005562 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005562 | ||
|accession_numbers=CAGE;DRX008415;DRR009287;DRZ000712;DRZ002097;DRZ012062;DRZ013447 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037188;DRR041554;DRZ007196 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002072,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002583 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000142 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.69!54.51!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.53!88.07!OSR1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!31.96!ZBED1;;chr9:132427972..132428056,+!p1@PRRX2!1.41!31.96!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.38!58.77!HIC1;;chr9:132427883..132427951,+!p2@PRRX2!1.38!22.73!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.26!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.04!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.28!57.35!TWIST2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.27!17.76!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!1.23!15.80!EBF2;;chr1:170632477..170632506,+!p6@PRRX1!1.21!15.27!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.20!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.07!IRX2;;chr17:1958388..1958404,+!p1@HIC1!1.11!75.82!HIC1;;chr12:54380036..54380091,+!p4@HOXC10!1.10!11.72!HOXC10;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.72!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.19!HOXC9;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!56.64!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.07!10.65!RFX8;;chr11:65687362..65687436,+!p3@DRAP1!1.04!46.34!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!1.04!24.68!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!17.05!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.57!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!1.02!9.59!EBF3;;chr10:64576105..64576133,-!p1@EGR2!1.01!19.18!EGR2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.09!TWIST2;;chr18:19749541..19749557,+!p1@GATA6!0.97!26.99!GATA6;;chr17:46621101..46621143,-!p7@HOXB2!0.97!11.36!HOXB2;;chr17:46621146..46621180,-!p10@HOXB2!0.97!8.35!HOXB2;;chr15:96869255..96869291,+!p6@NR2F2!0.96!15.09!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.96!8.17!SMAD3;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.17!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.95!37.29!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!0.95!7.81!HOXA9;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.64!HOXD8;;chr12:54402745..54402788,+!p1@HOXC8!0.94!7.64!HOXC8;;chr15:96876966..96877017,+!p12@NR2F2!0.93!11.01!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!0.92!23.62!TBX2;;chr8:22550982..22550999,-!p1@EGR3!0.90!20.42!EGR3;;chr4:111558135..111558198,-!p2@PITX2!0.89!6.75!PITX2;;chr4:174451370..174451387,-!p1@HAND2!0.88!6.57!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.64!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.87!12.61!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.87!9.41!GATA6;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.39!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.86!6.21!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.21!HOXA9;;chr11:65686802..65686818,+!p6@DRAP1!0.85!11.01!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.86!HAND2;;chr5:133450365..133450444,+!p1@TCF7!0.83!28.05!TCF7;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.10!DRAP1;;chr17:46675420..46675465,-!p3@HOXB6!0.83!6.75!HOXB6;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.74!TWIST1;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.28!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.68!HOXC9;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.68!RFX8;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.82!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.81!9.59!TCF12;;chr17:46622070..46622109,-!p1@HOXB2!0.80!12.61!HOXB2;;chr8:72756063..72756125,-!p1@MSC!0.80!11.19!MSC;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.33!ZNF668;;chr8:49833978..49833996,-!p1@SNAI2!0.79!115.77!SNAI2;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.86!TCF4;;chr12:54380404..54380433,+!p3@HOXC10!0.79!5.15!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.79!5.15!HOXC8;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.15!PRRX1;;chr17:59477275..59477286,+!p3@TBX2!0.78!6.92!TBX2;;chr8:72756637..72756664,-!p3@MSC!0.78!5.86!MSC;;chr1:170632683..170632696,+!p12@PRRX1!0.78!4.97!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.77!119.32!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.77!12.25!NFATC4;;chr11:65687158..65687216,+!p4@DRAP1!0.76!30.01!DRAP1;;chr15:96874244..96874259,+!p5@NR2F2!0.76!12.43!NR2F2;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.79!NPAS1;;chr2:119604456..119604501,-!p2@EN1!0.76!4.79!EN1;;chr2:19558327..19558334,-!p2@OSR1!0.76!4.79!OSR1;;chr15:96873984..96873999,+!p3@NR2F2!0.75!37.29!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.75!5.50!NR2F2;;chr14:95236440..95236465,-!p1@GSC!0.75!4.62!GSC;;chr17:46621279..46621297,-!p13@HOXB2!0.75!4.62!HOXB2;;chr12:66218836..66218888,+!p1@HMGA2!0.74!47.05!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.39!DRAP1;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.86!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.44!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.74!4.44!HOXC6;;chr15:96869165..96869183,+!p20@NR2F2!0.74!4.44!NR2F2;;chr12:115121962..115121987,-!p1@TBX3!0.73!40.84!TBX3;;chr11:65667884..65667895,-!p2@FOSL1!0.73!18.64!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.73!15.27!AHRR;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.20!MSX1;;chr12:66218212..66218244,+!p5@HMGA2!0.73!6.57!HMGA2;;chr16:86600870..86600921,+!p2@FOXC2!0.72!4.26!FOXC2;;chr5:72744594..72744609,-!p1@FOXD1!0.71!21.31!FOXD1;;chr15:96869114..96869160,+!p11@NR2F2!0.71!5.86!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.70!40.48!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!0.70!7.81!AEBP1;;chr8:72756267..72756296,-!p4@MSC!0.70!6.21!MSC;;chr6:34204921..34204939,+!p3@HMGA1!0.69!135.12!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!0.69!6.04!NFIX;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.35!TOX2;;chr18:19749517..19749531,+!p3@GATA6!0.67!7.10!GATA6;;chr22:19748231..19748317,+!p1@TBX1!0.67!3.73!TBX1;;chr1:170632762..170632786,+!p13@PRRX1!0.67!3.73!PRRX1;;chr19:31840313..31840380,-!p1@TSHZ3!0.66!10.12!TSHZ3;;chr12:66218183..66218209,+!p4@HMGA2!0.66!7.46!HMGA2;;chr7:27183291..27183324,-!p1@HOXA5!0.66!3.55!HOXA5;;chr15:96874216..96874236,+!p13@NR2F2!0.65!5.68!NR2F2;;chr17:46622114..46622138,-!p4@HOXB2!0.64!5.50!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.97!HOXB7;;chr17:46675558..46675577,-!p2@HOXB6!0.64!3.37!HOXB6;;chr11:46333934..46333963,+!p5@CREB3L1!0.64!3.37!CREB3L1;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.37!RFX8;;chr8:72756213..72756243,-!p5@MSC!0.62!4.26!MSC;;chr5:3595934..3595957,+!p2@IRX1!0.62!3.20!IRX1;;chr9:1050331..1050363,+!p1@DMRT2!0.62!3.20!DMRT2;;chr15:67430381..67430396,+!p21@SMAD3!0.62!3.20!SMAD3;;chr1:170632310..170632321,+!p15@PRRX1!0.62!3.20!PRRX1;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.50!GLI2;;chr11:120107344..120107351,+!p1@POU2F3!0.61!3.91!POU2F3;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.02!IRX1;;chr7:27183263..27183284,-!p2@HOXA5!0.60!3.02!HOXA5;;chr7:27192185..27192209,-!p1@HOXA3!0.60!3.02!HOXA3;;chr4:111544219..111544240,-!p1@PITX2!0.60!3.02!PITX2;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.44!NR2F2;;chr20:50179368..50179392,-!p2@NFATC2!0.59!3.91!NFATC2;;chr15:96873921..96873946,+!p1@NR2F2!0.58!96.77!NR2F2;;chr17:46621937..46621966,-!p2@HOXB2!0.58!8.88!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.44!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.58!4.08!FOXF2;;chr3:157823517..157823562,-!p1@SHOX2!0.58!3.02!SHOX2;;chr10:119302645..119302712,+!p3@EMX2!0.58!2.84!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.58!2.84!EMX2;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.84!HOXC9;;chr19:13135386..13135435,+!p4@NFIX!0.58!2.84!NFIX;;chr9:35732647..35732678,+!p2@CREB3!0.57!18.29!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.57!17.76!RARG;;chr12:26277817..26277863,-!p2@BHLHE41!0.57!3.91!BHLHE41;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.93!TAX1BP3;;chr16:86600458..86600461,+!p3@FOXC2!0.56!2.66!FOXC2;;chr17:59477403..59477414,+!p4@TBX2!0.56!2.66!TBX2;;chr1:44513995..44514031,+!p1@KLF17!0.56!2.66!KLF17;;chr19:45260775..45260838,+!p5@BCL3!0.55!3.55!BCL3;;chr6:144329384..144329405,-!p1@PLAGL1!0.54!36.22!PLAGL1;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.39!GLI2;;chr3:5021268..5021282,+!p4@BHLHE40!0.54!5.86!BHLHE40;;chr8:72756667..72756736,-!p2@MSC!0.54!4.26!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.54!2.49!SHOX2;;chr1:170632028..170632043,+!p20@PRRX1!0.54!2.49!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.54!2.49!PRRX1;;chr10:131762410..131762436,-!p2@EBF3!0.54!2.49!EBF3;;chr12:54402729..54402743,+!p3@HOXC8!0.54!2.49!HOXC8;;chr11:65686855..65686946,+!p1@DRAP1!0.53!233.32!DRAP1;;chr12:26277956..26277980,-!p1@BHLHE41!0.53!10.48!BHLHE41;;chr4:26322267..26322334,+!p3@RBPJ!0.53!6.92!RBPJ;;chr17:61919985..61920012,-!p3@SMARCD2!0.53!6.92!SMARCD2;;chr10:77161133..77161176,-!p3@ZNF503!0.53!6.04!ZNF503;;chr12:80085061..80085119,-!p6@PAWR!0.53!4.26!PAWR;;chr16:86544113..86544145,+!p1@FOXF1!0.53!3.20!FOXF1;;chr2:242576431..242576458,-!p3@THAP4!0.52!6.75!THAP4;;chr15:96875041..96875052,+!p17@NR2F2!0.52!3.73!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!0.52!2.31!HMGA2;;chr5:2751785..2751808,-!p2@IRX2!0.52!2.31!IRX2;;chr7:1577899..1577943,+!p3@MAFK!0.52!2.31!MAFK;;chr1:170633100..170633112,+!p19@PRRX1!0.52!2.31!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.52!2.31!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.52!2.31!EN1;;chr9:16705069..16705086,-!p3@BNC2!0.52!2.31!BNC2;;chr5:72744445..72744466,-!p2@FOXD1!0.51!4.26!FOXD1;;chr17:46655704..46655718,-!p2@HOXB4!0.51!3.73!HOXB4;;chr10:64134120..64134183,+!p1@ZNF365!0.51!2.84!ZNF365;;chr19:13106214..13106382,+!p1@NFIX!0.50!66.76!NFIX;;chr22:38598086..38598105,+!p1@MAFF!0.50!30.01!MAFF;;chr6:85474299..85474324,-!p1@TBX18!0.50!4.44!TBX18;;chr17:46622205..46622218,-!p3@HOXB2!0.50!2.66!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.50!2.66!HOXB2;;chr19:31840168..31840186,-!p6@TSHZ3!0.50!2.13!TSHZ3;;chr10:131762385..131762398,-!p4@EBF3!0.50!2.13!EBF3;;chr5:142780237..142780261,-!p7@NR3C1!0.50!2.13!NR3C1;;chr8:72755987..72756002,-!p7@MSC!0.50!2.13!MSC;;chr1:170632907..170632916,+!p22@PRRX1!0.50!2.13!PRRX1;;chr16:54320158..54320200,-!p5@IRX3!0.49!3.37!IRX3;;chr6:45296048..45296082,+!p1@RUNX2!0.49!2.49!RUNX2;;chr8:106330656..106330684,+!p1@ZFPM2!0.48!6.57!ZFPM2;;chr1:221053049..221053075,+!p3@HLX!0.48!4.08!HLX;;chr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I3;;chr6:45390025..45390076,+!p2@RUNX2!0.16!2.31!RUNX2;;chr16:3285119..3285133,-!p2@ZNF200!0.16!1.78!ZNF200;;chr4:146402843..146402864,+!p3@SMAD1!0.16!1.78!SMAD1;;chr11:57103312..57103321,-!p2@SSRP1!0.16!1.60!SSRP1;;chr12:11802932..11802949,+!p3@ETV6!0.16!1.42!ETV6;;chr3:71114115..71114126,-!p14@FOXP1!0.16!1.42!FOXP1;;chr22:38598042..38598052,+!p4@MAFF!0.16!1.24!MAFF;;chr17:20492136..20492165,+!p1@MEIS3P2!0.16!1.24!MEIS3P2;;chr17:42297092..42297112,-!p11@UBTF!0.16!1.24!UBTF;;chr6:21597370..21597408,+!p5@SOX4!0.16!1.24!SOX4;;chr19:12203069..12203094,+!p2@ZNF788!0.16!1.07!ZNF788;;chr20:48807648..48807671,+!p9@CEBPB!0.16!1.07!CEBPB;;chr2:174830540..174830563,-!p8@SP3!0.16!1.07!SP3;;chr19:57078386..57078407,+!p3@ZNF470!0.16!0.89!ZNF470;;chr5:142783365..142783379,-!p10@NR3C1!0.16!0.89!NR3C1;;chr7:27835758..27835772,+!p3@TAX1BP1!0.16!0.89!TAX1BP1;;chrX:66763815..66763854,+!p2@AR!0.16!0.89!AR;;chr1:158985469..158985489,+!p7@IFI16!0.16!0.71!IFI16;;chr1:221052840..221052875,+!p4@HLX!0.16!0.71!HLX;;chr1:221052994..221053008,+!p6@HLX!0.16!0.71!HLX;;chr1:93811637..93811648,+!p6@DR1!0.16!0.71!DR1;;chr5:137804130..137804156,+!p5@EGR1!0.16!0.53!EGR1;;chr6:43140149..43140177,+!p8@SRF!0.16!0.53!SRF;;chr12:10875831..10876025,-!p1@CSDA!0.15!105.83!CSDA;;chr2:28616337..28616355,+!p2@FOSL2!0.15!22.37!FOSL2;;chr19:8579030..8579061,-!p1@ZNF414!0.15!20.06!ZNF414;;chr19:1592828..1592910,-!p2@MBD3!0.15!9.59!MBD3;;chr11:64072981..64073005,+!p2@ESRRA!0.15!7.81!ESRRA;;chr9:139294638..139294678,-!p@chr9:139294638..139294678,-!0.15!6.04!SNAPC4;;chr2:178128149..178128198,-!p2@NFE2L2!0.15!6.04!NFE2L2;;chr2:178129358..178129403,-!p5@NFE2L2!0.15!4.44!NFE2L2;;chr12:53856284..53856299,+!p3@PCBP2!0.15!2.84!PCBP2;;chr19:46272106..46272115,-!p3@SIX5!0.15!2.66!SIX5;;chr7:6676986..6677005,+!p2@ENST00000427912!0.15!2.66!ZNF316;;chr18:3449527..3449582,+!p6@TGIF1!0.15!1.60!TGIF1;;chr3:24536253..24536328,-!p1@THRB!0.15!1.60!THRB;;chr7:137686552..137686564,-!p9@CREB3L2!0.15!1.07!CREB3L2;;chr1:221052700..221052730,+!p5@HLX!0.15!1.07!HLX;;chr19:45972701..45972774,+!p2@FOSB!0.15!0.89!FOSB;;chr19:49864746..49864780,-!p2@TEAD2!0.15!0.89!TEAD2;;chr11:6947647..6947698,+!p2@ZNF215!0.15!0.89!ZNF215;;chr12:72056800..72056834,+!p1@THAP2!0.15!0.89!THAP2;;chr16:67881588..67881612,-!p2@CENPT!0.15!0.89!CENPT;;chr11:8102819..8102845,+!p3@TUB!0.15!0.71!TUB;;chr12:66218003..66218018,+!p9@HMGA2!0.15!0.71!HMGA2;;chr1:23696448..23696453,-!p5@ZNF436!0.15!0.71!ZNF436;;chr5:92919100..92919135,+!p3@NR2F1!0.15!0.71!NR2F1;;chr9:73028462..73028491,-!p8@KLF9!0.15!0.71!KLF9;;chr17:42295955..42295964,-!p22@UBTF!0.15!0.53!UBTF;;chr18:3448314..3448333,+!p18@TGIF1!0.15!0.53!TGIF1;;chr11:57103327..57103372,-!p1@SSRP1!0.14!59.48!SSRP1;;chr11:12695944..12695989,+!p1@TEAD1!0.14!44.39!TEAD1;;chr18:51750948..51751059,-!p1@MBD2!0.14!39.77!MBD2;;chr10:135122380..135122458,+!p1@ZNF511!0.14!37.47!ZNF511;;chr16:67063036..67063088,+!p1@CBFB!0.14!19.71!CBFB;;chr19:4066803..4066886,-!p1@ZBTB7A!0.14!12.78!ZBTB7A;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.14!11.54!ZNF576;;chr10:105110831..105110885,-!p1@PCGF6!0.14!11.36!PCGF6;;chr17:38256822..38256851,-!p1@NR1D1!0.14!9.06!NR1D1;;chr18:45457004..45457043,-!p3@SMAD2!0.14!4.79!SMAD2;;chr2:174828836..174828885,-!p5@SP3!0.14!3.73!SP3;;chr2:27357446..27357475,-!p2@PREB!0.14!3.55!PREB;;chr16:2059754..2059777,-!p2@ZNF598!0.14!3.55!ZNF598;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.14!2.66!ZFP112;;chr6:15246200..15246214,+!p2@JARID2!0.14!2.66!JARID2;;chr2:113993052..113993097,-!p2@PAX8!0.14!1.95!PAX8;;chr4:144435112..144435176,+!p3@SMARCA5!0.14!1.78!SMARCA5;;chr1:42501569..42501614,-!p1@HIVEP3!0.14!1.78!HIVEP3;;chr7:44924939..44924993,-!p2@PURB!0.14!1.60!PURB;;chr19:19779589..19779616,+!p2@ZNF101!0.14!1.60!ZNF101;;chr5:178368186..178368238,+!p1@ZNF454!0.14!1.42!ZNF454;;chr16:1429674..1429703,-!p3@UNKL!0.14!1.24!UNKL;;chr12:80084279..80084293,-!p8@PAWR!0.14!1.24!PAWR;;chr16:54320646..54320672,-!p2@IRX3!0.14!1.07!IRX3;;chr7:28448995..28449011,+!p4@CREB5!0.14!0.89!CREB5;;chrX:56258844..56258882,+!p1@KLF8!0.14!0.89!KLF8;;chr3:44754176..44754196,+!p2@ZNF502!0.14!0.89!ZNF502;;chr5:72744562..72744573,-!p3@FOXD1!0.14!0.71!FOXD1;;chrX:24167800..24167811,+!p3@ZFX!0.14!0.71!ZFX;;chr9:14307229..14307286,-!p10@NFIB!0.14!0.53!NFIB;;chr15:67418119..67418162,+!p5@SMAD3!0.14!0.53!SMAD3;;chr16:31454084..31454115,-!p1@ZNF843!0.14!0.53!ZNF843;;chr16:3333546..3333558,+!p5@ZNF263!0.14!0.53!ZNF263;;chr16:69419724..69419735,-!p4@TERF2!0.14!0.53!TERF2;;chr12:27485733..27485742,+!p5@ARNTL2!0.14!0.53!ARNTL2;;chr5:149380256..149380343,+!p1@HMGXB3!0.13!35.33!HMGXB3;;chr16:67867749..67867852,-!p1@CENPT!0.13!27.17!CENPT;;chr16:29817617..29817664,+!p4@MAZ!0.13!12.25!MAZ;;chr17:17740330..17740349,-!p3@SREBF1!0.13!7.28!SREBF1;;chr13:45151259..45151326,-!p2@TSC22D1!0.13!6.57!TSC22D1;;chr20:42295713..42295738,+!p2@MYBL2!0.13!6.39!MYBL2;;chr19:35264089..35264146,-!p1@ZNF599!0.13!5.50!ZNF599;;chr10:35415882..35415941,+!p4@CREM!0.13!4.62!CREM;;chr18:22932080..22932170,-!p1@ZNF521!0.13!4.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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.69!54.51!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.53!88.07!OSR1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.52!31.96!ZBED1;;chr9:132427972..132428056,+!p1@PRRX2!1.41!31.96!PRRX2;;chr17:1959369..1959388,+!p2@HIC1!1.38!58.77!HIC1;;chr9:132427883..132427951,+!p2@PRRX2!1.38!22.73!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.26!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.29!25.04!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.28!57.35!TWIST2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.27!17.76!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!1.23!15.80!EBF2;;chr1:170632477..170632506,+!p6@PRRX1!1.21!15.27!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.20!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.07!IRX2;;chr17:1958388..1958404,+!p1@HIC1!1.11!75.82!HIC1;;chr12:54380036..54380091,+!p4@HOXC10!1.10!11.72!HOXC10;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.72!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.19!HOXC9;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!56.64!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!1.07!10.65!RFX8;;chr11:65687362..65687436,+!p3@DRAP1!1.04!46.34!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!1.04!24.68!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!17.05!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.57!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!1.02!9.59!EBF3;;chr10:64576105..64576133,-!p1@EGR2!1.01!19.18!EGR2;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.06!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.09!TWIST2;;chr18:19749541..19749557,+!p1@GATA6!0.97!26.99!GATA6;;chr17:46621101..46621143,-!p7@HOXB2!0.97!11.36!HOXB2;;chr17:46621146..46621180,-!p10@HOXB2!0.97!8.35!HOXB2;;chr15:96869255..96869291,+!p6@NR2F2!0.96!15.09!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.96!8.17!SMAD3;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.17!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.95!37.29!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!0.95!7.81!HOXA9;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.64!HOXD8;;chr12:54402745..54402788,+!p1@HOXC8!0.94!7.64!HOXC8;;chr15:96876966..96877017,+!p12@NR2F2!0.93!11.01!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!0.92!23.62!TBX2;;chr8:22550982..22550999,-!p1@EGR3!0.90!20.42!EGR3;;chr4:111558135..111558198,-!p2@PITX2!0.89!6.75!PITX2;;chr4:174451370..174451387,-!p1@HAND2!0.88!6.57!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.64!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.87!12.61!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.87!9.41!GATA6;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.39!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.86!6.21!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.21!HOXA9;;chr11:65686802..65686818,+!p6@DRAP1!0.85!11.01!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.84!5.86!HAND2;;chr5:133450365..133450444,+!p1@TCF7!0.83!28.05!TCF7;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.10!DRAP1;;chr17:46675420..46675465,-!p3@HOXB6!0.83!6.75!HOXB6;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.74!TWIST1;;chr19:31840130..31840160,-!p2@TSHZ3!0.82!9.06!TSHZ3;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.28!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.68!HOXC9;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.68!RFX8;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.82!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.81!9.59!TCF12;;chr17:46622070..46622109,-!p1@HOXB2!0.80!12.61!HOXB2;;chr8:72756063..72756125,-!p1@MSC!0.80!11.19!MSC;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.33!ZNF668;;chr8:49833978..49833996,-!p1@SNAI2!0.79!115.77!SNAI2;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.86!TCF4;;chr12:54380404..54380433,+!p3@HOXC10!0.79!5.15!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.79!5.15!HOXC8;;chr1:170632115..170632136,+!p9@PRRX1!0.79!5.15!PRRX1;;chr17:59477275..59477286,+!p3@TBX2!0.78!6.92!TBX2;;chr8:72756637..72756664,-!p3@MSC!0.78!5.86!MSC;;chr1:170632683..170632696,+!p12@PRRX1!0.78!4.97!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.77!119.32!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.77!12.25!NFATC4;;chr11:65687158..65687216,+!p4@DRAP1!0.76!30.01!DRAP1;;chr15:96874244..96874259,+!p5@NR2F2!0.76!12.43!NR2F2;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.79!NPAS1;;chr2:119604456..119604501,-!p2@EN1!0.76!4.79!EN1;;chr2:19558327..19558334,-!p2@OSR1!0.76!4.79!OSR1;;chr15:96873984..96873999,+!p3@NR2F2!0.75!37.29!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.75!5.50!NR2F2;;chr14:95236440..95236465,-!p1@GSC!0.75!4.62!GSC;;chr17:46621279..46621297,-!p13@HOXB2!0.75!4.62!HOXB2;;chr12:66218836..66218888,+!p1@HMGA2!0.74!47.05!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.39!DRAP1;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.86!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.44!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.74!4.44!HOXC6;;chr15:96869165..96869183,+!p20@NR2F2!0.74!4.44!NR2F2;;chr12:115121962..115121987,-!p1@TBX3!0.73!40.84!TBX3;;chr11:65667884..65667895,-!p2@FOSL1!0.73!18.64!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.73!15.27!AHRR;;chr4:4861385..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I3;;chr6:45390025..45390076,+!p2@RUNX2!0.16!2.31!RUNX2;;chr16:3285119..3285133,-!p2@ZNF200!0.16!1.78!ZNF200;;chr4:146402843..146402864,+!p3@SMAD1!0.16!1.78!SMAD1;;chr11:57103312..57103321,-!p2@SSRP1!0.16!1.60!SSRP1;;chr12:11802932..11802949,+!p3@ETV6!0.16!1.42!ETV6;;chr3:71114115..71114126,-!p14@FOXP1!0.16!1.42!FOXP1;;chr22:38598042..38598052,+!p4@MAFF!0.16!1.24!MAFF;;chr17:20492136..20492165,+!p1@MEIS3P2!0.16!1.24!MEIS3P2;;chr17:42297092..42297112,-!p11@UBTF!0.16!1.24!UBTF;;chr6:21597370..21597408,+!p5@SOX4!0.16!1.24!SOX4;;chr19:12203069..12203094,+!p2@ZNF788!0.16!1.07!ZNF788;;chr20:48807648..48807671,+!p9@CEBPB!0.16!1.07!CEBPB;;chr2:174830540..174830563,-!p8@SP3!0.16!1.07!SP3;;chr19:57078386..57078407,+!p3@ZNF470!0.16!0.89!ZNF470;;chr5:142783365..142783379,-!p10@NR3C1!0.16!0.89!NR3C1;;chr7:27835758..27835772,+!p3@TAX1BP1!0.16!0.89!TAX1BP1;;chrX:66763815..66763854,+!p2@AR!0.16!0.89!AR;;chr1:158985469..158985489,+!p7@IFI16!0.16!0.71!IFI16;;chr1:221052840..221052875,+!p4@HLX!0.16!0.71!HLX;;chr1:221052994..221053008,+!p6@HLX!0.16!0.71!HLX;;chr1:93811637..93811648,+!p6@DR1!0.16!0.71!DR1;;chr5:137804130..137804156,+!p5@EGR1!0.16!0.53!EGR1;;chr6:43140149..43140177,+!p8@SRF!0.16!0.53!SRF;;chr12:10875831..10876025,-!p1@CSDA!0.15!105.83!CSDA;;chr2:28616337..28616355,+!p2@FOSL2!0.15!22.37!FOSL2;;chr19:8579030..8579061,-!p1@ZNF414!0.15!20.06!ZNF414;;chr19:1592828..1592910,-!p2@MBD3!0.15!9.59!MBD3;;chr11:64072981..64073005,+!p2@ESRRA!0.15!7.81!ESRRA;;chr9:139294638..139294678,-!p@chr9:139294638..139294678,-!0.15!6.04!SNAPC4;;chr2:178128149..178128198,-!p2@NFE2L2!0.15!6.04!NFE2L2;;chr2:178129358..178129403,-!p5@NFE2L2!0.15!4.44!NFE2L2;;chr12:53856284..53856299,+!p3@PCBP2!0.15!2.84!PCBP2;;chr19:46272106..46272115,-!p3@SIX5!0.15!2.66!SIX5;;chr7:6676986..6677005,+!p2@ENST00000427912!0.15!2.66!ZNF316;;chr18:3449527..3449582,+!p6@TGIF1!0.15!1.60!TGIF1;;chr3:24536253..24536328,-!p1@THRB!0.15!1.60!THRB;;chr7:137686552..137686564,-!p9@CREB3L2!0.15!1.07!CREB3L2;;chr1:221052700..221052730,+!p5@HLX!0.15!1.07!HLX;;chr19:45972701..45972774,+!p2@FOSB!0.15!0.89!FOSB;;chr19:49864746..49864780,-!p2@TEAD2!0.15!0.89!TEAD2;;chr11:6947647..6947698,+!p2@ZNF215!0.15!0.89!ZNF215;;chr12:72056800..72056834,+!p1@THAP2!0.15!0.89!THAP2;;chr16:67881588..67881612,-!p2@CENPT!0.15!0.89!CENPT;;chr11:8102819..8102845,+!p3@TUB!0.15!0.71!TUB;;chr12:66218003..66218018,+!p9@HMGA2!0.15!0.71!HMGA2;;chr1:23696448..23696453,-!p5@ZNF436!0.15!0.71!ZNF436;;chr5:92919100..92919135,+!p3@NR2F1!0.15!0.71!NR2F1;;chr9:73028462..73028491,-!p8@KLF9!0.15!0.71!KLF9;;chr17:42295955..42295964,-!p22@UBTF!0.15!0.53!UBTF;;chr18:3448314..3448333,+!p18@TGIF1!0.15!0.53!TGIF1;;chr11:57103327..57103372,-!p1@SSRP1!0.14!59.48!SSRP1;;chr11:12695944..12695989,+!p1@TEAD1!0.14!44.39!TEAD1;;chr18:51750948..51751059,-!p1@MBD2!0.14!39.77!MBD2;;chr10:135122380..135122458,+!p1@ZNF511!0.14!37.47!ZNF511;;chr16:67063036..67063088,+!p1@CBFB!0.14!19.71!CBFB;;chr19:4066803..4066886,-!p1@ZBTB7A!0.14!12.78!ZBTB7A;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.14!11.54!ZNF576;;chr10:105110831..105110885,-!p1@PCGF6!0.14!11.36!PCGF6;;chr17:38256822..38256851,-!p1@NR1D1!0.14!9.06!NR1D1;;chr18:45457004..45457043,-!p3@SMAD2!0.14!4.79!SMAD2;;chr2:174828836..174828885,-!p5@SP3!0.14!3.73!SP3;;chr2:27357446..27357475,-!p2@PREB!0.14!3.55!PREB;;chr16:2059754..2059777,-!p2@ZNF598!0.14!3.55!ZNF598;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.14!2.66!ZFP112;;chr6:15246200..15246214,+!p2@JARID2!0.14!2.66!JARID2;;chr2:113993052..113993097,-!p2@PAX8!0.14!1.95!PAX8;;chr4:144435112..144435176,+!p3@SMARCA5!0.14!1.78!SMARCA5;;chr1:42501569..42501614,-!p1@HIVEP3!0.14!1.78!HIVEP3;;chr7:44924939..44924993,-!p2@PURB!0.14!1.60!PURB;;chr19:19779589..19779616,+!p2@ZNF101!0.14!1.60!ZNF101;;chr5:178368186..178368238,+!p1@ZNF454!0.14!1.42!ZNF454;;chr16:1429674..1429703,-!p3@UNKL!0.14!1.24!UNKL;;chr12:80084279..80084293,-!p8@PAWR!0.14!1.24!PAWR;;chr16:54320646..54320672,-!p2@IRX3!0.14!1.07!IRX3;;chr7:28448995..28449011,+!p4@CREB5!0.14!0.89!CREB5;;chrX:56258844..56258882,+!p1@KLF8!0.14!0.89!KLF8;;chr3:44754176..44754196,+!p2@ZNF502!0.14!0.89!ZNF502;;chr5:72744562..72744573,-!p3@FOXD1!0.14!0.71!FOXD1;;chrX:24167800..24167811,+!p3@ZFX!0.14!0.71!ZFX;;chr9:14307229..14307286,-!p10@NFIB!0.14!0.53!NFIB;;chr15:67418119..67418162,+!p5@SMAD3!0.14!0.53!SMAD3;;chr16:31454084..31454115,-!p1@ZNF843!0.14!0.53!ZNF843;;chr16:3333546..3333558,+!p5@ZNF263!0.14!0.53!ZNF263;;chr16:69419724..69419735,-!p4@TERF2!0.14!0.53!TERF2;;chr12:27485733..27485742,+!p5@ARNTL2!0.14!0.53!ARNTL2;;chr5:149380256..149380343,+!p1@HMGXB3!0.13!35.33!HMGXB3;;chr16:67867749..67867852,-!p1@CENPT!0.13!27.17!CENPT;;chr16:29817617..29817664,+!p4@MAZ!0.13!12.25!MAZ;;chr17:17740330..17740349,-!p3@SREBF1!0.13!7.28!SREBF1;;chr13:45151259..45151326,-!p2@TSC22D1!0.13!6.57!TSC22D1;;chr20:42295713..42295738,+!p2@MYBL2!0.13!6.39!MYBL2;;chr19:35264089..35264146,-!p1@ZNF599!0.13!5.50!ZNF599;;chr10:35415882..35415941,+!p4@CREM!0.13!4.62!CREM;;chr18:22932080..22932170,-!p1@ZNF521!0.13!4.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002583;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor3.CNhs12038.11428-118G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11428-118G6 | |id=FF:11428-118G6 | ||
|is_a=EFO:0002091;;FF:0000142 | |is_a=EFO:0002091;;FF:0000142 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12038 | |||
|library_id_phase_based=2:CNhs12038 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11428 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.ACTTGA.11428 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11428 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.ACTTGA.11428 | |||
|name=Preadipocyte - subcutaneous, donor3 | |name=Preadipocyte - subcutaneous, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12038,LSID837,release011,COMPLETED | |profile_hcage=CNhs12038,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA802s-R10a | |rna_catalog_number=CA802s-R10a | ||
| Line 58: | Line 82: | ||
|rna_tube_id=118G6 | |rna_tube_id=118G6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.ACTTGA | |||
|sample_age=60 | |sample_age=60 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=TAL1_TCF{3,4,12}:1.81270838572;HES1:1.801530552;ALX4:1.67931533701;ESR1:1.59696813253;UFEwm:1.544192459;EN1,2:1.42978649941;HOX{A5,B5}:1.41657519574;GLI1..3:1.27537689218;ZNF238:1.24194024246;PAX1,9:1.18753758479;IKZF1:1.11928373781;TFCP2:1.11116430197;NKX2-2,8:1.07628649483;NFE2L1:0.991136111696;KLF4:0.99016722673;GZF1:0.965063529502;MAFB:0.93265844554;NANOG{mouse}:0.907094305731;SPZ1:0.844995930082;TP53:0.841207961407;HSF1,2:0.835934569441;TFAP4:0.833953683014;GFI1B:0.818616304684;RXR{A,B,G}:0.814920105186;GCM1,2:0.789959920771;EBF1:0.753936892444;ZNF423:0.728198358877;SRF:0.704118257087;ATF6:0.695401754984;TLX1..3_NFIC{dimer}:0.686918135695;ZBTB6:0.677973309902;TEAD1:0.6637979306;LHX3,4:0.643758078678;RXRA_VDR{dimer}:0.630203259128;XBP1:0.627183016386;HOX{A4,D4}:0.617072830766;ZIC1..3:0.576934496814;NR3C1:0.551447065734;NR6A1:0.539883718657;HOX{A6,A7,B6,B7}:0.519231467796;NFE2L2:0.504824596958;HAND1,2:0.499844246628;MYBL2:0.498758922241;GTF2I:0.495536559061;GATA4:0.48351050519;TBP:0.483144945492;SOX17:0.475126002291;NKX3-1:0.467379479611;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.467078687994;TFAP2B:0.462593405182;FOXL1:0.449917602078;MTE{core}:0.444417626501;NKX3-2:0.429107041436;AR:0.414960202033;TFDP1:0.401074304195;YY1:0.400038239449;EVI1:0.394884599494;NFATC1..3:0.381969274725;XCPE1{core}:0.363357766728;HIC1:0.334494774913;PRDM1:0.331216939491;ESRRA:0.325089987154;EGR1..3:0.303278231064;GTF2A1,2:0.250018047176;SMAD1..7,9:0.247940248403;TEF:0.245863544737;PAX8:0.242688041909;BACH2:0.238746811464;TOPORS:0.233817684086;ZNF148:0.220053532227;NFIX:0.219249291571;TFAP2{A,C}:0.20912826178;ZNF384:0.207800476467;POU3F1..4:0.204803556669;DBP:0.164894948105;FOS_FOS{B,L1}_JUN{B,D}:0.125430128151;HLF:0.125268862521;PATZ1:0.117111883987;NHLH1,2:0.115973068194;HMX1:0.114448173162;RREB1:0.114087941471;HMGA1,2:0.110576274177;REST:0.0888299212703;CDC5L:0.0873554399973;E2F1..5:0.0795931541512;HBP1_HMGB_SSRP1_UBTF:0.0689888034197;MYFfamily:0.0669250122014;HNF1A:0.0642362341151;NR5A1,2:0.0392935719605;TBX4,5:0.0152464716835;ALX1:0.00202463400479;MZF1:-0.00240001147681;FOXM1:-0.00677470420968;FOX{I1,J2}:-0.00763772478341;PPARG:-0.0684096399794;ELK1,4_GABP{A,B1}:-0.0685499236523;HIF1A:-0.069636394828;MYB:-0.0859030695795;RUNX1..3:-0.089727576404;GFI1:-0.129646986755;PAX5:-0.166575940286;MAZ:-0.181078293633;LEF1_TCF7_TCF7L1,2:-0.215722606629;ZNF143:-0.223299093485;NR1H4:-0.229724913823;bHLH_family:-0.235956404825;MTF1:-0.236219652146;FOSL2:-0.24196935962;ARID5B:-0.24291552411;IRF1,2:-0.248510794835;NFIL3:-0.287423015928;PBX1:-0.295103031272;NFKB1_REL_RELA:-0.307071211656;STAT2,4,6:-0.308912997935;ZFP161:-0.339507109134;JUN:-0.3425123162;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.34921816685;NFE2:-0.370117255859;MEF2{A,B,C,D}:-0.371192560791;RFX1:-0.376377824377;HNF4A_NR2F1,2:-0.382142282924;NKX6-1,2:-0.399106558709;DMAP1_NCOR{1,2}_SMARC:-0.427947407059;STAT1,3:-0.436517040555;POU6F1:-0.442222503861;AIRE:-0.443104426162;MED-1{core}:-0.447387013467;NKX2-3_NKX2-5:-0.45542453215;PRRX1,2:-0.457459024289;OCT4_SOX2{dimer}:-0.466665403188;CREB1:-0.468087008642;SPI1:-0.46918619432;FOXD3:-0.481765342969;NRF1:-0.484962816202;CEBPA,B_DDIT3:-0.487641981665;AHR_ARNT_ARNT2:-0.505496120558;PAX2:-0.512608273753;FOXO1,3,4:-0.525032624765;ELF1,2,4:-0.53290960729;SPIB:-0.536739312687;ONECUT1,2:-0.537885157213;SOX{8,9,10}:-0.573425650688;SP1:-0.57611901786;PAX4:-0.582542211831;PAX3,7:-0.587998149577;ETS1,2:-0.625068178253;POU2F1..3:-0.652814182012;TLX2:-0.655622588579;IRF7:-0.659300524029;NFY{A,B,C}:-0.672519832429;POU5F1:-0.673364668508;GATA6:-0.687783321417;SOX2:-0.689491500126;NKX2-1,4:-0.698580146297;SOX5:-0.701818023758;FOXA2:-0.717176389418;LMO2:-0.719568263325;STAT5{A,B}:-0.72090377633;ZEB1:-0.729507126075;ZBTB16:-0.751343838842;TGIF1:-0.767292054533;BREu{core}:-0.798111611802;PAX6:-0.800594322782;CRX:-0.871506360602;SNAI1..3:-0.877989488513;FOXP3:-0.892212943074;BPTF:-0.894409409575;FOX{D1,D2}:-0.908757897193;HOXA9_MEIS1:-0.923374142008;EP300:-0.928751130698;ATF5_CREB3:-0.949397719622;ATF2:-0.959818139231;FOXQ1:-0.963589766688;NANOG:-1.06904505001;ADNP_IRX_SIX_ZHX:-1.07750590905;FOXN1:-1.09478958259;MYOD1:-1.10305259898;SREBF1,2:-1.10672781821;CUX2:-1.11022320723;ATF4:-1.14543965725;T:-1.16650273194;PITX1..3:-1.16763278734;IKZF2:-1.21265804116;RORA:-1.22615773724;RFX2..5_RFXANK_RFXAP:-1.23105808573;FOXP1:-1.26221575959;POU1F1:-1.27125904383;CDX1,2,4:-1.27355932519;VSX1,2:-1.2906964138;PDX1:-1.49729534302;RBPJ:-1.68638537627;FOX{F1,F2,J1}:-1.79179816953 | |top_motifs=TAL1_TCF{3,4,12}:1.81270838572;HES1:1.801530552;ALX4:1.67931533701;ESR1:1.59696813253;UFEwm:1.544192459;EN1,2:1.42978649941;HOX{A5,B5}:1.41657519574;GLI1..3:1.27537689218;ZNF238:1.24194024246;PAX1,9:1.18753758479;IKZF1:1.11928373781;TFCP2:1.11116430197;NKX2-2,8:1.07628649483;NFE2L1:0.991136111696;KLF4:0.99016722673;GZF1:0.965063529502;MAFB:0.93265844554;NANOG{mouse}:0.907094305731;SPZ1:0.844995930082;TP53:0.841207961407;HSF1,2:0.835934569441;TFAP4:0.833953683014;GFI1B:0.818616304684;RXR{A,B,G}:0.814920105186;GCM1,2:0.789959920771;EBF1:0.753936892444;ZNF423:0.728198358877;SRF:0.704118257087;ATF6:0.695401754984;TLX1..3_NFIC{dimer}:0.686918135695;ZBTB6:0.677973309902;TEAD1:0.6637979306;LHX3,4:0.643758078678;RXRA_VDR{dimer}:0.630203259128;XBP1:0.627183016386;HOX{A4,D4}:0.617072830766;ZIC1..3:0.576934496814;NR3C1:0.551447065734;NR6A1:0.539883718657;HOX{A6,A7,B6,B7}:0.519231467796;NFE2L2:0.504824596958;HAND1,2:0.499844246628;MYBL2:0.498758922241;GTF2I:0.495536559061;GATA4:0.48351050519;TBP:0.483144945492;SOX17:0.475126002291;NKX3-1:0.467379479611;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.467078687994;TFAP2B:0.462593405182;FOXL1:0.449917602078;MTE{core}:0.444417626501;NKX3-2:0.429107041436;AR:0.414960202033;TFDP1:0.401074304195;YY1:0.400038239449;EVI1:0.394884599494;NFATC1..3:0.381969274725;XCPE1{core}:0.363357766728;HIC1:0.334494774913;PRDM1:0.331216939491;ESRRA:0.325089987154;EGR1..3:0.303278231064;GTF2A1,2:0.250018047176;SMAD1..7,9:0.247940248403;TEF:0.245863544737;PAX8:0.242688041909;BACH2:0.238746811464;TOPORS:0.233817684086;ZNF148:0.220053532227;NFIX:0.219249291571;TFAP2{A,C}:0.20912826178;ZNF384:0.207800476467;POU3F1..4:0.204803556669;DBP:0.164894948105;FOS_FOS{B,L1}_JUN{B,D}:0.125430128151;HLF:0.125268862521;PATZ1:0.117111883987;NHLH1,2:0.115973068194;HMX1:0.114448173162;RREB1:0.114087941471;HMGA1,2:0.110576274177;REST:0.0888299212703;CDC5L:0.0873554399973;E2F1..5:0.0795931541512;HBP1_HMGB_SSRP1_UBTF:0.0689888034197;MYFfamily:0.0669250122014;HNF1A:0.0642362341151;NR5A1,2:0.0392935719605;TBX4,5:0.0152464716835;ALX1:0.00202463400479;MZF1:-0.00240001147681;FOXM1:-0.00677470420968;FOX{I1,J2}:-0.00763772478341;PPARG:-0.0684096399794;ELK1,4_GABP{A,B1}:-0.0685499236523;HIF1A:-0.069636394828;MYB:-0.0859030695795;RUNX1..3:-0.089727576404;GFI1:-0.129646986755;PAX5:-0.166575940286;MAZ:-0.181078293633;LEF1_TCF7_TCF7L1,2:-0.215722606629;ZNF143:-0.223299093485;NR1H4:-0.229724913823;bHLH_family:-0.235956404825;MTF1:-0.236219652146;FOSL2:-0.24196935962;ARID5B:-0.24291552411;IRF1,2:-0.248510794835;NFIL3:-0.287423015928;PBX1:-0.295103031272;NFKB1_REL_RELA:-0.307071211656;STAT2,4,6:-0.308912997935;ZFP161:-0.339507109134;JUN:-0.3425123162;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.34921816685;NFE2:-0.370117255859;MEF2{A,B,C,D}:-0.371192560791;RFX1:-0.376377824377;HNF4A_NR2F1,2:-0.382142282924;NKX6-1,2:-0.399106558709;DMAP1_NCOR{1,2}_SMARC:-0.427947407059;STAT1,3:-0.436517040555;POU6F1:-0.442222503861;AIRE:-0.443104426162;MED-1{core}:-0.447387013467;NKX2-3_NKX2-5:-0.45542453215;PRRX1,2:-0.457459024289;OCT4_SOX2{dimer}:-0.466665403188;CREB1:-0.468087008642;SPI1:-0.46918619432;FOXD3:-0.481765342969;NRF1:-0.484962816202;CEBPA,B_DDIT3:-0.487641981665;AHR_ARNT_ARNT2:-0.505496120558;PAX2:-0.512608273753;FOXO1,3,4:-0.525032624765;ELF1,2,4:-0.53290960729;SPIB:-0.536739312687;ONECUT1,2:-0.537885157213;SOX{8,9,10}:-0.573425650688;SP1:-0.57611901786;PAX4:-0.582542211831;PAX3,7:-0.587998149577;ETS1,2:-0.625068178253;POU2F1..3:-0.652814182012;TLX2:-0.655622588579;IRF7:-0.659300524029;NFY{A,B,C}:-0.672519832429;POU5F1:-0.673364668508;GATA6:-0.687783321417;SOX2:-0.689491500126;NKX2-1,4:-0.698580146297;SOX5:-0.701818023758;FOXA2:-0.717176389418;LMO2:-0.719568263325;STAT5{A,B}:-0.72090377633;ZEB1:-0.729507126075;ZBTB16:-0.751343838842;TGIF1:-0.767292054533;BREu{core}:-0.798111611802;PAX6:-0.800594322782;CRX:-0.871506360602;SNAI1..3:-0.877989488513;FOXP3:-0.892212943074;BPTF:-0.894409409575;FOX{D1,D2}:-0.908757897193;HOXA9_MEIS1:-0.923374142008;EP300:-0.928751130698;ATF5_CREB3:-0.949397719622;ATF2:-0.959818139231;FOXQ1:-0.963589766688;NANOG:-1.06904505001;ADNP_IRX_SIX_ZHX:-1.07750590905;FOXN1:-1.09478958259;MYOD1:-1.10305259898;SREBF1,2:-1.10672781821;CUX2:-1.11022320723;ATF4:-1.14543965725;T:-1.16650273194;PITX1..3:-1.16763278734;IKZF2:-1.21265804116;RORA:-1.22615773724;RFX2..5_RFXANK_RFXAP:-1.23105808573;FOXP1:-1.26221575959;POU1F1:-1.27125904383;CDX1,2,4:-1.27355932519;VSX1,2:-1.2906964138;PDX1:-1.49729534302;RBPJ:-1.68638537627;FOX{F1,F2,J1}:-1.79179816953 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11428-118G6;search_select_hide=table117:FF:11428-118G6 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Preadipocyte - subcutaneous, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12038 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12038
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12038
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.663 |
| 10 | 10 | 0.777 |
| 100 | 100 | 0.858 |
| 101 | 101 | 0.498 |
| 102 | 102 | 0.601 |
| 103 | 103 | 0.187 |
| 104 | 104 | 0.71 |
| 105 | 105 | 0.184 |
| 106 | 106 | 0.0579 |
| 107 | 107 | 0.0302 |
| 108 | 108 | 0.179 |
| 109 | 109 | 0.14 |
| 11 | 11 | 0.43 |
| 110 | 110 | 0.253 |
| 111 | 111 | 0.622 |
| 112 | 112 | 0.186 |
| 113 | 113 | 0.00529 |
| 114 | 114 | 0.326 |
| 115 | 115 | 0.0342 |
| 116 | 116 | 0.0551 |
| 117 | 117 | 0.635 |
| 118 | 118 | 0.661 |
| 119 | 119 | 0.747 |
| 12 | 12 | 0.477 |
| 120 | 120 | 0.146 |
| 121 | 121 | 0.726 |
| 122 | 122 | 0.062 |
| 123 | 123 | 0.00413 |
| 124 | 124 | 0.54 |
| 125 | 125 | 0.292 |
| 126 | 126 | 0.53 |
| 127 | 127 | 0.625 |
| 128 | 128 | 0.0905 |
| 129 | 129 | 0.592 |
| 13 | 13 | 0.984 |
| 130 | 130 | 0.56 |
| 131 | 131 | 0.806 |
| 132 | 132 | 0.486 |
| 133 | 133 | 0.197 |
| 134 | 134 | 0.357 |
| 135 | 135 | 0.877 |
| 136 | 136 | 0.937 |
| 137 | 137 | 0.658 |
| 138 | 138 | 0.471 |
| 139 | 139 | 0.7 |
| 14 | 14 | 0.141 |
| 140 | 140 | 0.707 |
| 141 | 141 | 0.954 |
| 142 | 142 | 0.685 |
| 143 | 143 | 0.0665 |
| 144 | 144 | 0.988 |
| 145 | 145 | 0.97 |
| 146 | 146 | 0.931 |
| 147 | 147 | 0.159 |
| 148 | 148 | 0.577 |
| 149 | 149 | 0.0506 |
| 15 | 15 | 0.83 |
| 150 | 150 | 0.0662 |
| 151 | 151 | 0.496 |
| 152 | 152 | 0.00701 |
| 153 | 153 | 0.885 |
| 154 | 154 | 0.449 |
| 155 | 155 | 0.158 |
| 156 | 156 | 0.396 |
| 157 | 157 | 0.6 |
| 158 | 158 | 0.0134 |
| 159 | 159 | 0.309 |
| 16 | 16 | 0.0138 |
| 160 | 160 | 0.306 |
| 161 | 161 | 0.513 |
| 162 | 162 | 0.173 |
| 163 | 163 | 0.681 |
| 164 | 164 | 0.206 |
| 165 | 165 | 0.748 |
| 166 | 166 | 0.629 |
| 167 | 167 | 0.673 |
| 168 | 168 | 0.985 |
| 169 | 169 | 0.0167 |
| 17 | 17 | 0.209 |
| 18 | 18 | 0.151 |
| 19 | 19 | 0.0159 |
| 2 | 2 | 0.161 |
| 20 | 20 | 0.243 |
| 21 | 21 | 0.047 |
| 22 | 22 | 0.147 |
| 23 | 23 | 0.546 |
| 24 | 24 | 0.789 |
| 25 | 25 | 0.313 |
| 26 | 26 | 0.18 |
| 27 | 27 | 0.181 |
| 28 | 28 | 0.117 |
| 29 | 29 | 0.358 |
| 3 | 3 | 0.501 |
| 30 | 30 | 0.255 |
| 31 | 31 | 0.732 |
| 32 | 32 | 4.45017e-11 |
| 33 | 33 | 0.936 |
| 34 | 34 | 0.557 |
| 35 | 35 | 0.645 |
| 36 | 36 | 0.0377 |
| 37 | 37 | 0.0918 |
| 38 | 38 | 0.906 |
| 39 | 39 | 0.134 |
| 4 | 4 | 0.911 |
| 40 | 40 | 0.336 |
| 41 | 41 | 0.676 |
| 42 | 42 | 0.753 |
| 43 | 43 | 0.579 |
| 44 | 44 | 0.0763 |
| 45 | 45 | 0.799 |
| 46 | 46 | 0.211 |
| 47 | 47 | 0.876 |
| 48 | 48 | 0.523 |
| 49 | 49 | 0.815 |
| 5 | 5 | 0.862 |
| 50 | 50 | 0.496 |
| 51 | 51 | 0.441 |
| 52 | 52 | 0.76 |
| 53 | 53 | 0.211 |
| 54 | 54 | 0.674 |
| 55 | 55 | 0.454 |
| 56 | 56 | 0.996 |
| 57 | 57 | 0.79 |
| 58 | 58 | 0.482 |
| 59 | 59 | 0.0454 |
| 6 | 6 | 0.692 |
| 60 | 60 | 0.716 |
| 61 | 61 | 0.816 |
| 62 | 62 | 0.748 |
| 63 | 63 | 0.424 |
| 64 | 64 | 0.71 |
| 65 | 65 | 0.205 |
| 66 | 66 | 0.605 |
| 67 | 67 | 0.516 |
| 68 | 68 | 0.458 |
| 69 | 69 | 0.246 |
| 7 | 7 | 0.337 |
| 70 | 70 | 0.442 |
| 71 | 71 | 0.136 |
| 72 | 72 | 0.923 |
| 73 | 73 | 0.0123 |
| 74 | 74 | 0.0778 |
| 75 | 75 | 0.241 |
| 76 | 76 | 0.63 |
| 77 | 77 | 0.0169 |
| 78 | 78 | 0.508 |
| 79 | 79 | 0.0115 |
| 8 | 8 | 0.0644 |
| 80 | 80 | 0.579 |
| 81 | 81 | 0.807 |
| 82 | 82 | 0.528 |
| 83 | 83 | 0.533 |
| 84 | 84 | 0.459 |
| 85 | 85 | 0.351 |
| 86 | 86 | 0.585 |
| 87 | 87 | 0.017 |
| 88 | 88 | 0.571 |
| 89 | 89 | 0.0433 |
| 9 | 9 | 0.138 |
| 90 | 90 | 0.342 |
| 91 | 91 | 0.463 |
| 92 | 92 | 0.361 |
| 93 | 93 | 0.677 |
| 94 | 94 | 0.642 |
| 95 | 95 | 0.0168 |
| 96 | 96 | 0.963 |
| 97 | 97 | 0.635 |
| 98 | 98 | 0.362 |
| 99 | 99 | 0.00205 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12038
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002583 (subcutaneous preadipocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002072 (hypodermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000142 (human subcutaneous preadipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
