FFCP PHASE1:Hg19::chr3:45928083..45928100,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10803 | |EntrezGene=10803 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1610 | |HGNC=1610 | ||
|TSSclassifier=strong | |||
|UniProt=C9JWC0 | |UniProt=C9JWC0 | ||
|association_with_transcript=42bp_to_ENST00000355983,ENST00000422395_5end | |association_with_transcript=42bp_to_ENST00000355983,ENST00000422395_5end | ||
|cluster_id=chr3:45928083..45928100,+ | |||
|coexpression_cluster_id=C28 | |coexpression_cluster_id=C28 | ||
|description=CAGE_peak_3_at_CCR9_5end | |description=CAGE_peak_3_at_CCR9_5end | ||
|id=chr3:45928083..45928100,+ | |id=chr3:45928083..45928100,+ | ||
|ontology_enrichment_celltype=CL:0000624;3.97e-14;6!CL:0000084;5.34e-13;25!CL:0000791;1.61e-10;18!CL:0000789;1.61e-10;18!CL:0002419;1.61e-10;18 | |ontology_enrichment_celltype=CL:0000084!2.02e-27!25;CL:0000827!2.02e-27!25;CL:0000791!4.39e-27!18;CL:0000789!4.39e-27!18;CL:0002420!4.39e-27!18;CL:0002419!4.39e-27!18;CL:0000790!4.39e-27!18;CL:0000838!7.11e-22!52;CL:0000542!2.14e-21!53;CL:0000051!2.14e-21!53;CL:0000625!1.66e-16!11;CL:0000624!3.28e-14!6;CL:0002087!6.68e-10!119;CL:0000738!5.24e-09!140;CL:0000842!1.23e-07!3;CL:0000623!1.73e-07!3;CL:0000825!1.73e-07!3;CL:0002031!4.04e-07!124 | ||
| | |ontology_enrichment_celltype_v019=CL:0000624;3.97e-14;6!CL:0000084;5.34e-13;25!CL:0000791;1.61e-10;18!CL:0000789;1.61e-10;18!CL:0002419;1.61e-10;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000624,3.71e-14,6;CL:0000084,5.18e-13,25;CL:0000827,5.18e-13,25;CL:0000791,1.46e-10,18;CL:0000789,1.46e-10,18;CL:0002420,1.46e-10,18;CL:0002419,1.46e-10,18;CL:0000790,1.46e-10,18;CL:0000838,1.30e-09,52;CL:0000542,1.96e-09,53;CL:0000051,1.96e-09,53 | |||
|ontology_enrichment_development_v019=UBERON:0006965;2.23e-11;2!CL:0000790;1.61e-10;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002370;3.99e-41;2!UBERON:0005058;3.99e-41;2!UBERON:0009113;3.99e-41;2!UBERON:0004177;3.95e-17;5!UBERON:0005057;3.95e-17;5 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.67e-12!7;UBERON:0002106!1.46e-07!3;UBERON:0004854!1.46e-07!3;UBERON:0009034!1.46e-07!3;UBERON:0002095!1.46e-07!3;UBERON:0004782!1.46e-07!3;UBERON:0003281!1.46e-07!3;UBERON:0009664!1.46e-07!3;UBERON:0002296!1.46e-07!3;UBERON:0005602!1.46e-07!3;UBERON:0001179!1.46e-07!3;UBERON:0006293!1.46e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.99e-41;2!UBERON:0005058;3.99e-41;2!UBERON:0009113;3.99e-41;2!UBERON:0004177;3.95e-17;5!UBERON:0005057;3.95e-17;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.82e-21,4;UBERON:0005058,3.82e-21,4;UBERON:0009113,3.82e-21,4;UBERON:0003295,3.82e-21,4;UBERON:0005562,3.82e-21,4;UBERON:0003351,1.90e-14,6;UBERON:0004177,1.59e-12,7;UBERON:0005057,1.59e-12,7;UBERON:0000974,4.75e-09,10;UBERON:0003408,4.75e-09,10;UBERON:0001042,4.75e-09,10;UBERON:0009145,4.75e-09,10;UBERON:0006562,2.62e-08,11;UBERON:0009722,2.62e-08,11;UBERON:0007690,2.62e-08,11 | |||
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|short_description=p3@CCR9 | |short_description=p3@CCR9 | ||
}} | }} |
Latest revision as of 09:31, 18 September 2015
Short description: | p3@CCR9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CCR9_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 42bp_to_ENST00000355983, ENST00000422395_5end |
EntrezGene: | CCR9 |
HGNC: | 1610 |
UniProt: | C9JWC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 3.71e-14 | 6 |
T cell | 5.18e-13 | 25 |
pro-T cell | 5.18e-13 | 25 |
mature alpha-beta T cell | 1.46e-10 | 18 |
alpha-beta T cell | 1.46e-10 | 18 |
immature T cell | 1.46e-10 | 18 |
mature T cell | 1.46e-10 | 18 |
immature alpha-beta T cell | 1.46e-10 | 18 |
lymphoid lineage restricted progenitor cell | 1.30e-09 | 52 |
lymphocyte | 1.96e-09 | 53 |
common lymphoid progenitor | 1.96e-09 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.82e-21 | 4 |
hemolymphoid system gland | 3.82e-21 | 4 |
thymic region | 3.82e-21 | 4 |
pharyngeal gland | 3.82e-21 | 4 |
thymus primordium | 3.82e-21 | 4 |
pharyngeal epithelium | 1.90e-14 | 6 |
hemopoietic organ | 1.59e-12 | 7 |
immune organ | 1.59e-12 | 7 |
neck | 4.75e-09 | 10 |
gland of gut | 4.75e-09 | 10 |
chordate pharynx | 4.75e-09 | 10 |
pharyngeal region of foregut | 4.75e-09 | 10 |
pharynx | 2.62e-08 | 11 |
entire pharyngeal arch endoderm | 2.62e-08 | 11 |
early pharyngeal endoderm | 2.62e-08 | 11 |