FFCP PHASE1:Hg19::chr1:156096337..156096353,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:156096337..156096353,+
|short_description=p6@LMNA
|description=CAGE_peak_6_at_LMNA_5end
|association_with_transcript=0bp_to_ENST00000473598,uc001fnk.2_5end...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAQ3,Q5TCI9 | |UniProt=D6RAQ3,Q5TCI9 | ||
|association_with_transcript=0bp_to_ENST00000473598,uc001fnk.2_5end | |||
|cluster_id=chr1:156096337..156096353,+ | |||
|coexpression_cluster_id=C512 | |||
|description=CAGE_peak_6_at_LMNA_5end | |||
|id=chr1:156096337..156096353,+ | |||
|ontology_enrichment_celltype=CL:0002057!9.12e-25!42;CL:0000860!2.19e-23!45;CL:0000557!2.70e-17!71;CL:0002009!1.16e-15!65;CL:0000839!1.68e-15!70;CL:0000766!1.92e-15!76;CL:0002194!1.61e-14!63;CL:0000576!1.61e-14!63;CL:0000040!1.61e-14!63;CL:0000559!1.61e-14!63;CL:0000012!5.13e-14!682;CL:0000548!2.05e-13!679;CL:0000004!2.05e-13!679;CL:0000255!2.05e-13!679;CL:0000048!2.44e-12!430;CL:0000723!7.63e-12!436;CL:0000034!3.45e-11!444;CL:0000134!4.44e-11!358;CL:0002371!5.80e-11!591;CL:0002320!8.44e-11!365;CL:0000219!8.87e-11!390;CL:0000144!3.89e-10!625;CL:0000063!4.96e-09!578;CL:0000763!9.28e-09!112;CL:0000049!9.28e-09!112;CL:0000738!2.29e-08!140;CL:0000003!2.10e-07!722;CL:0002031!2.19e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.75e-29;33!CL:0002057;1.75e-29;33!CL:0000576;2.48e-22;48!CL:0000473;5.61e-21;39!CL:0000234;5.61e-21;39!CL:0000766;8.61e-15;69!CL:0002393;7.30e-09;6!CL:0002397;7.30e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.14e-39,42;CL:0002057,1.14e-39,42;CL:0000473,3.26e-34,48;CL:0000234,3.26e-34,48;CL:0000557,1.83e-30,67;CL:0000766,6.13e-29,72;CL:0002009,7.65e-28,61;CL:0000839,1.11e-27,66;CL:0002194,9.34e-26,59;CL:0000576,9.34e-26,59;CL:0000040,9.34e-26,59;CL:0000559,9.34e-26,59;CL:0000763,2.00e-17,108;CL:0000049,2.00e-17,108;CL:0000738,4.22e-17,136;CL:0002031,4.81e-16,120;CL:0000134,1.41e-14,354;CL:0002320,3.31e-14,361;CL:0002087,3.32e-14,115;CL:0000219,8.83e-14,386;CL:0000048,3.30e-12,427;CL:0000037,4.49e-12,168;CL:0000034,1.04e-11,441;CL:0000723,1.43e-11,433;CL:0002032,6.57e-11,161;CL:0000837,6.57e-11,161;CL:0000988,1.52e-10,177;CL:0002393,1.84e-08,9;CL:0002397,1.84e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;5.71e-29;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.95e-17!80;UBERON:0001474!1.24e-16!86;UBERON:0004765!1.87e-14!101;UBERON:0001434!1.87e-14!101;UBERON:0002204!4.17e-13!167;UBERON:0002390!3.23e-11!102;UBERON:0003061!3.23e-11!102;UBERON:0002384!7.91e-11!375;UBERON:0003081!7.10e-10!216;UBERON:0002193!3.32e-09!112;UBERON:0002405!1.09e-08!115;UBERON:0000926!6.51e-08!448;UBERON:0004120!6.51e-08!448;UBERON:0006603!6.51e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.11e-30,76;UBERON:0001474,3.34e-29,82;UBERON:0004765,3.92e-26,90;UBERON:0001434,1.40e-22,100;UBERON:0002390,1.83e-22,98;UBERON:0003061,1.83e-22,98;UBERON:0002405,2.55e-21,93;UBERON:0003081,7.38e-20,203;UBERON:0002193,1.05e-18,108;UBERON:0002204,1.98e-14,167;UBERON:0000926,3.51e-14,315;UBERON:0004120,3.51e-14,315;UBERON:0006603,3.51e-14,315;UBERON:0002384,6.37e-14,371 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0.522371256399677,0.245733936501509,1.39560233594486,0,1.31883489114227,1.8564952944007,0.994192127183747,0.672325146451775,0.602694528023977,1.46062018077475,0,0.246242116153576,0.408001382488506,0.313454721478088,0.286235987131057,0.547497700291537,0.627713197974014,0.0764134057479513,0.0821005894499457,0,20.8483066729919,10.747223146722,12.5401059886022,0,0,0.369754010166788,0,0,1.76160263600908,5.53995408531877,9.82667792603694,21.4840762008693,0,0,0,4.50734540216651,3.77875943688809,3.39617685662943,5.57829688573643,1.23350366406548,5.88442104700697,4.02769349251011,3.84241059793651,2.60130452877444,4.82643953031266,3.22742341791913,1.35426486594342,3.20011977222428,2.72906150057846,2.9214052977861,3.06083892370903,2.56743221660875,1.91801137739712,4.28806690242731,7.18069167437875,5.96714650745772,4.06292934080018,3.97169657283798,2.4912889959823,2.51248665256743,6.25779502104242,4.34377689410233,1.21079900526674,4.05105399586321,0.949387162322653,5.28138215779854,4.46469029926591,4.61249020118427,2.47122988522289,3.15371474967163,1.76798145366788,1.42506371870624,0.39783335439818,1.0959849225878,0,0,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0.382273228125229,2.64342657158052,1.68152568894461,0,0.393419540227666,2.75107533924415,1.23360899399706,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,1.20964045934839,1.87208137048455,0.868946423296794,0,0.670700859703636,0.639312809217652,0,1.00267582127178,0.434539556882471,0,0.973269740605272,0.283604451492204,0,0.527008714158756,0.130979075497713,0,0,0,0,0,0.715471872916026,0.571994910780128,0.371457501329565,0.198762407366705,0,0,0,0,0,1.04497483268405,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0.949265659568129,0.183201743930407,0,0,0,0.496971951695318,0.12663051166458,3.70745706277013,1.14734648299525,0,1.12135520028461,1.06748995729705,0.98667019366864,0.311211035399766,0.269421344139376,0.490385709340376,0.151357427644931,0,0.234321431833797,1.24864030732128,0.570471821544449,1.19558944441441,0.469737994575059,0.485618833104395,1.12360645361799,0.816616685019573,1.10550885580591,0.929932030581889,0,0.247266929278557,0,0.718618141816238,0.168336113954066,0.375355559615893,0,0,1.22595118319608,0.45071417671979,0.226864366320042,1.25572744982203,0.213557388818567,0.211931901159562,6.00182192168805,0.309157587715317,2.31876486041066,0.744467425326359,3.54430297706659,0.584622030967192,2.27190396819703,0.460249493211497,0.484938170456436,2.4850671476163,0.403008392910561,0.67824236924195,0.386521706326594,0,0,0,0,0,0,0,0,3.12899064659632,1.28648187638577,4.14404764057442,0.464367928031979,0,0.118306800039844,0.337169380156203,0,0,0,0,0.134831308160164,0.588664395376038,0.769494313892781,0,1.40241773803446,0,1.47008711385542,0,0,0,0,0,0.343135620597051,0.548751427043128,0,0.100528972411631,0.277765335475589,0.651616610620649,1.03993478527958,1.44331342025273,0.34779121492523,0,0,0.462985512576611,0.190254152234598,0.790204397959275,0.858486162094873,0,0,0,0,0.335964256397719,0,0.0895585227028483,0.290633938513962,1.15014803749563,0.492663237895943,1.49682337822484,17.4155617054249,30.4093101709789,14.2653949771809,0,0.381988425558278,0,0,0.514137463516618,0.300343057843917,0.285826432630578,0.336393253036082,0,0.1466765716419,0.258543431515556,0,1.690605505112,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0.65147236858747,0.355391948742546,0,0.301439377059586,1.74306691720059,0.099972991182057,0,1.00451418286425,0,0,0,0,0.144781306667579,0.61642896765115,0.179060963239896,0,2.95546140302891,7.11570997036407,4.49200626979119,0.254094624222463,0,0,0.670065061337395,0.637938751653163,0,0,0,0,0.500170521059677,0,6.23912584592421,0.892144943985809,1.73472656537328,1.28855556491985,0,0,1.03473071292505,0,0.553107505625109,0.781952530212746,0,0,1.24060815673732,6.47142602455851,1.38745825144478,1.5156378572313,1.66435439510497,2.41912234663744,0,1.2276957863045,0,0.384417447767103,0,0.482561763430822,0,0.308419387605311,0.177561725313127,0.328508624055237,1.03850885836724,1.74315567689939,0,0.601519410909855,0.0920809889358963,0.34444334449382,0.546273504020151,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,1.13733384070897,0,0.431831832204279,0,0.270946437543853,0,0,0,0.447749509444357,0,0,0,0.328014645699706,0.325378394664303,0.206082023295445,0.0915694648183434,0.660075999364704,0,0,0,0.096670718292122,0.308097234229289,0,0.689182862422653,0.107420244868274,0.290033387828457,0.170453254832202,0.534192213880424,0,0,0.638063562472921,0,0.464845549297286,1.5740617341532,0.6970372701606,0.308033580176089,1.59691809095107,0.869932992075073,1.29726953372744,0.715624433709956,0,0,0.38126038784765,0,0,1.27281299170375,1.56989728039846,0.179872457583315,0.274537029736055,0.117812402345686,1.2130948894399,0,0,0,0,2.11300293513511,0.409499734223957,0.4242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|short_description=p6@LMNA | |||
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Latest revision as of 15:03, 17 September 2015
Short description: | p6@LMNA |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LMNA_5end |
Coexpression cluster: | C512_Mast_immature_Basophils_CD14_CD34_Peripheral_Natural |
Association with transcript: | 0bp_to_ENST00000473598, uc001fnk.2_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | D6RAQ3Q5TCI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.14e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.14e-39 | 42 |
defensive cell | 3.26e-34 | 48 |
phagocyte | 3.26e-34 | 48 |
granulocyte monocyte progenitor cell | 1.83e-30 | 67 |
myeloid leukocyte | 6.13e-29 | 72 |
macrophage dendritic cell progenitor | 7.65e-28 | 61 |
myeloid lineage restricted progenitor cell | 1.11e-27 | 66 |
monopoietic cell | 9.34e-26 | 59 |
monocyte | 9.34e-26 | 59 |
monoblast | 9.34e-26 | 59 |
promonocyte | 9.34e-26 | 59 |
myeloid cell | 2.00e-17 | 108 |
common myeloid progenitor | 2.00e-17 | 108 |
leukocyte | 4.22e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 4.81e-16 | 120 |
mesenchymal cell | 1.41e-14 | 354 |
connective tissue cell | 3.31e-14 | 361 |
nongranular leukocyte | 3.32e-14 | 115 |
motile cell | 8.83e-14 | 386 |
multi fate stem cell | 3.30e-12 | 427 |
hematopoietic stem cell | 4.49e-12 | 168 |
stem cell | 1.04e-11 | 441 |
somatic stem cell | 1.43e-11 | 433 |
hematopoietic oligopotent progenitor cell | 6.57e-11 | 161 |
hematopoietic multipotent progenitor cell | 6.57e-11 | 161 |
hematopoietic cell | 1.52e-10 | 177 |
intermediate monocyte | 1.84e-08 | 9 |
CD14-positive, CD16-positive monocyte | 1.84e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.11e-30 | 76 |
bone element | 3.34e-29 | 82 |
skeletal element | 3.92e-26 | 90 |
skeletal system | 1.40e-22 | 100 |
hematopoietic system | 1.83e-22 | 98 |
blood island | 1.83e-22 | 98 |
immune system | 2.55e-21 | 93 |
lateral plate mesoderm | 7.38e-20 | 203 |
hemolymphoid system | 1.05e-18 | 108 |
musculoskeletal system | 1.98e-14 | 167 |
mesoderm | 3.51e-14 | 315 |
mesoderm-derived structure | 3.51e-14 | 315 |
presumptive mesoderm | 3.51e-14 | 315 |
connective tissue | 6.37e-14 | 371 |