FFCP PHASE1:Hg19::chr6:56557942..56557959,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100652766,667 | |EntrezGene=100652766,667 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1090 | |HGNC=1090 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=141bp_to_ENST00000521104,uc003pde.2_5end | |association_with_transcript=141bp_to_ENST00000521104,uc003pde.2_5end | ||
|cluster_id=chr6:56557942..56557959,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_20_at_DST_5end | |description=CAGE_peak_20_at_DST_5end | ||
|id=chr6:56557942..56557959,- | |id=chr6:56557942..56557959,- | ||
|ontology_enrichment_celltype=CL:0000306;2.43e-08;4!CL:0002222;2.43e-08;4!CL:0002224;2.43e-08;4!CL:0000243;1.17e-07;15!CL:0000125;1.17e-07;15!CL:0000095;6.01e-07;17 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000306;2.43e-08;4!CL:0002222;2.43e-08;4!CL:0002224;2.43e-08;4!CL:0000243;1.17e-07;15!CL:0000125;1.17e-07;15!CL:0000095;6.01e-07;17 | ||
|ontology_enrichment_disease=DOID:3093;1.85e-10;11 | |ontology_enrichment_celltype_v019_2=CL:0000306,2.61e-08,4;CL:0002222,2.61e-08,4;CL:0002224,2.61e-08,4;CL:0000243,1.17e-07,15;CL:0000125,1.17e-07,15;CL:0000030,1.17e-07,15;CL:0000339,1.17e-07,15;CL:0000095,6.01e-07,17;CL:0000123,6.01e-07,17 | ||
|ontology_enrichment_uberon=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0001894;2.46e-17;7!UBERON:0002360;2.37e-15;2!UBERON:0000094;2.37e-15;2!UBERON:0010743;2.37e-15;2!UBERON:0000970;2.10e-13;20!UBERON:0002104;8.39e-13;21!UBERON:0000020;9.39e-12;23!UBERON:0001032;2.70e-11;24!UBERON:0004456;2.70e-11;24!UBERON:0010077;2.43e-08;4!UBERON:0005389;2.43e-08;4!UBERON:0000484;2.43e-08;4!UBERON:0000965;2.43e-08;4!UBERON:0001803;2.43e-08;4!UBERON:0000966;5.38e-07;5!UBERON:0005388;5.38e-07;5!UBERON:0001802;5.38e-07;5!UBERON:0000019;6.38e-07;19!UBERON:0000047;6.38e-07;19!UBERON:0004088;6.38e-07;19!UBERON:0010230;6.38e-07;19 | |ontology_enrichment_development_v019=UBERON:0006238;2.55e-11;10!UBERON:0003056;8.17e-11;3!CL:0000339;1.17e-07;15 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;1.85e-10;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.85e-10,11 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.83e-23!86;UBERON:0001017!7.60e-23!82;UBERON:0000955!1.65e-21!69;UBERON:0006238!1.65e-21!69;UBERON:0000073!1.29e-20!94;UBERON:0001016!1.29e-20!94;UBERON:0001049!1.46e-20!57;UBERON:0005068!1.46e-20!57;UBERON:0006241!1.46e-20!57;UBERON:0007135!1.46e-20!57;UBERON:0003075!3.38e-20!86;UBERON:0007284!3.38e-20!86;UBERON:0002346!5.14e-19!90;UBERON:0007023!5.48e-19!115;UBERON:0002616!1.38e-17!59;UBERON:0002780!1.01e-14!41;UBERON:0001890!1.01e-14!41;UBERON:0006240!1.01e-14!41;UBERON:0003080!2.68e-14!42;UBERON:0003056!1.26e-13!61;UBERON:0002308!4.39e-13!9;UBERON:0000125!4.39e-13!9;UBERON:0000033!4.64e-13!123;UBERON:0000153!3.68e-12!129;UBERON:0007811!3.68e-12!129;UBERON:0004121!2.10e-11!169;UBERON:0006331!3.21e-11!3;UBERON:0002020!4.46e-11!34;UBERON:0003528!4.46e-11!34;UBERON:0000924!5.61e-11!173;UBERON:0006601!5.61e-11!173;UBERON:0000988!6.61e-11!3;UBERON:0002298!1.80e-10!8;UBERON:0002791!1.64e-09!33;UBERON:0001893!3.53e-09!34;UBERON:0001894!9.42e-09!7;UBERON:0006222!9.42e-09!7;UBERON:0001905!9.55e-09!2;UBERON:0002757!9.55e-09!2;UBERON:0010134!9.55e-09!2;UBERON:0002784!9.55e-09!2;UBERON:0005408!9.55e-09!2;UBERON:0001899!9.55e-09!2;UBERON:0002148!5.90e-08!2;UBERON:0009662!5.90e-08!2;UBERON:0009663!7.39e-08!7;UBERON:0003076!1.30e-07!15;UBERON:0003057!1.30e-07!15;UBERON:0000025!9.56e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0001894;2.46e-17;7!UBERON:0002360;2.37e-15;2!UBERON:0000094;2.37e-15;2!UBERON:0010743;2.37e-15;2!UBERON:0000970;2.10e-13;20!UBERON:0002104;8.39e-13;21!UBERON:0000020;9.39e-12;23!UBERON:0001032;2.70e-11;24!UBERON:0004456;2.70e-11;24!UBERON:0010077;2.43e-08;4!UBERON:0005389;2.43e-08;4!UBERON:0000484;2.43e-08;4!UBERON:0000965;2.43e-08;4!UBERON:0001803;2.43e-08;4!UBERON:0000966;5.38e-07;5!UBERON:0005388;5.38e-07;5!UBERON:0001802;5.38e-07;5!UBERON:0000019;6.38e-07;19!UBERON:0000047;6.38e-07;19!UBERON:0004088;6.38e-07;19!UBERON:0010230;6.38e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.13e-57,2;UBERON:0002757,1.13e-57,2;UBERON:0010134,1.13e-57,2;UBERON:0005408,1.13e-57,2;UBERON:0001899,1.13e-57,2;UBERON:0003296,1.78e-29,4;UBERON:0010133,1.78e-29,4;UBERON:0002784,1.78e-29,4;UBERON:0001894,2.46e-17,7;UBERON:0006222,2.46e-17,7;UBERON:0002360,2.05e-15,2;UBERON:0000094,2.05e-15,2;UBERON:0010743,2.05e-15,2;UBERON:0000970,8.73e-13,21;UBERON:0002104,8.73e-13,21;UBERON:0000020,2.80e-11,24;UBERON:0001032,2.80e-11,24;UBERON:0004456,2.80e-11,24;UBERON:0001017,6.78e-09,81;UBERON:0010077,2.61e-08,4;UBERON:0005389,2.61e-08,4;UBERON:0000484,2.61e-08,4;UBERON:0002546,2.61e-08,4;UBERON:0000965,2.61e-08,4;UBERON:0001803,2.61e-08,4;UBERON:0003073,2.61e-08,4;UBERON:0005426,2.61e-08,4;UBERON:0001016,4.75e-08,89;UBERON:0003056,8.15e-08,61;UBERON:0000955,5.48e-07,68;UBERON:0006238,5.48e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0.337552664482532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,1.97446857438575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0.123563938946503,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,1.80784592624426,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0.124252535565433,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,1.19730191562487,0,0.170388021785422,0,0,0,0.517131825446202,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0,5.81064266732169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,180.531518690983,583.115974327441,0,0,0.0887023701626388,0,0,0.135939465953663,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.428859265059938,12.7991025503509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0.245148321753905,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724030971033267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0.337552664482532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,1.97446857438575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0.123563938946503,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,1.80784592624426,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0.124252535565433,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,1.19730191562487,0,0.170388021785422,0,0,0,0.517131825446202,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.110929051536852,0,5.81064266732169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,180.531518690983,583.115974327441,0,0,0.0887023701626388,0,0,0.135939465953663,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.428859265059938,12.7991025503509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0.245148321753905,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724030971033267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p20@DST | |short_description=p20@DST | ||
}} | }} |
Latest revision as of 09:35, 19 September 2015
Short description: | p20@DST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_DST_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 141bp_to_ENST00000521104, uc003pde.2_5end |
EntrezGene: | 100652766,667 |
HGNC: | 1090 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 2.61e-08 | 4 |
vertebrate lens cell | 2.61e-08 | 4 |
lens epithelial cell | 2.61e-08 | 4 |
glial cell (sensu Vertebrata) | 1.17e-07 | 15 |
glial cell | 1.17e-07 | 15 |
glioblast | 1.17e-07 | 15 |
glioblast (sensu Vertebrata) | 1.17e-07 | 15 |
neuron associated cell | 6.01e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.01e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.13e-57 | 2 |
regional part of epithalamus | 1.13e-57 | 2 |
secretory circumventricular organ | 1.13e-57 | 2 |
circumventricular organ | 1.13e-57 | 2 |
epithalamus | 1.13e-57 | 2 |
gland of diencephalon | 1.78e-29 | 4 |
neuroendocrine gland | 1.78e-29 | 4 |
regional part of diencephalon | 1.78e-29 | 4 |
diencephalon | 2.46e-17 | 7 |
future diencephalon | 2.46e-17 | 7 |
meninx | 2.05e-15 | 2 |
membrane organ | 2.05e-15 | 2 |
meningeal cluster | 2.05e-15 | 2 |
eye | 8.73e-13 | 21 |
visual system | 8.73e-13 | 21 |
sense organ | 2.80e-11 | 24 |
sensory system | 2.80e-11 | 24 |
entire sense organ system | 2.80e-11 | 24 |
central nervous system | 6.78e-09 | 81 |
cuboidal epithelium | 2.61e-08 | 4 |
transparent eye structure | 2.61e-08 | 4 |
simple cuboidal epithelium | 2.61e-08 | 4 |
cranial placode | 2.61e-08 | 4 |
lens of camera-type eye | 2.61e-08 | 4 |
epithelium of lens | 2.61e-08 | 4 |
lens placode | 2.61e-08 | 4 |
lens vesicle | 2.61e-08 | 4 |
nervous system | 4.75e-08 | 89 |
pre-chordal neural plate | 8.15e-08 | 61 |
brain | 5.48e-07 | 68 |
future brain | 5.48e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.85e-10 | 11 |