FFCP PHASE1:Hg19::chr1:43824332..43824352,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-3bp_to_ENST00000424948_5end | |association_with_transcript=-3bp_to_ENST00000424948_5end | ||
|cluster_id=chr1:43824332..43824352,- | |||
|description=CAGE_peak_1_at_ENST00000424948_5end | |description=CAGE_peak_1_at_ENST00000424948_5end | ||
|id=chr1:43824332..43824352,- | |id=chr1:43824332..43824352,- | ||
|ontology_enrichment_celltype=CL:0000066!6.93e-21!254;CL:0000063!1.48e-08!578;CL:0000082!2.60e-08!19;CL:0000076!3.49e-08!62;CL:0002076!5.11e-08!43;CL:0000012!6.72e-07!682 | |ontology_enrichment_celltype=CL:0000066!6.93e-21!254;CL:0000063!1.48e-08!578;CL:0000082!2.60e-08!19;CL:0000076!3.49e-08!62;CL:0002076!5.11e-08!43;CL:0000012!6.72e-07!682 | ||
|ontology_enrichment_celltype_v019=CL:0000082;2.97e-10;19!CL:0002368;3.64e-08;13!CL:0002076;6.92e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.01e-23,253;CL:0000082,1.90e-10,19;CL:0000076,5.78e-10,63;CL:0002076,6.37e-10,42;CL:0002368,6.10e-08,13;CL:0000223,3.72e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.03e-17!106;DOID:0050687!2.64e-15!143;DOID:162!3.56e-14!235;DOID:14566!4.09e-13!239;DOID:1749!5.39e-08!14;DOID:0050615!6.24e-07!16 | |ontology_enrichment_disease=DOID:305!4.03e-17!106;DOID:0050687!2.64e-15!143;DOID:162!3.56e-14!235;DOID:14566!4.09e-13!239;DOID:1749!5.39e-08!14;DOID:0050615!6.24e-07!16 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.18e-11;14!DOID:0050615;3.82e-09;16!DOID:299;2.68e-08;25!DOID:1324;3.01e-08;15 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.60e-20,106;DOID:0050687,3.78e-18,143;DOID:162,8.62e-14,235;DOID:14566,6.41e-13,239;DOID:1749,2.32e-11,14;DOID:0050615,2.55e-09,16;DOID:1324,1.95e-08,15;DOID:299,2.82e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.67e-13!169;UBERON:0000925!4.67e-13!169;UBERON:0006595!4.67e-13!169;UBERON:0005153!6.30e-10!37;UBERON:0000065!1.53e-09!53;UBERON:0001004!1.62e-09!72;UBERON:0001007!1.78e-09!155;UBERON:0001555!1.78e-09!155;UBERON:0007026!1.78e-09!155;UBERON:0000072!5.56e-09!46;UBERON:0000077!6.61e-09!130;UBERON:0005157!7.06e-09!51;UBERON:0005178!1.90e-08!34;UBERON:0002224!1.90e-08!34;UBERON:0004802!2.60e-08!19;UBERON:0000115!2.60e-08!19;UBERON:0008947!4.35e-08!38;UBERON:0003258!4.35e-08!38;UBERON:0004921!7.37e-08!129;UBERON:0004185!7.37e-08!129;UBERON:0005181!1.00e-07!35;UBERON:0004807!3.49e-07!28;UBERON:0002048!8.58e-07!22;UBERON:0000117!8.58e-07!22;UBERON:0000171!8.58e-07!22;UBERON:0000170!8.58e-07!22;UBERON:0005597!8.58e-07!22;UBERON:0000118!8.58e-07!22;UBERON:0001041!9.69e-07!98 | |ontology_enrichment_uberon=UBERON:0004119!4.67e-13!169;UBERON:0000925!4.67e-13!169;UBERON:0006595!4.67e-13!169;UBERON:0005153!6.30e-10!37;UBERON:0000065!1.53e-09!53;UBERON:0001004!1.62e-09!72;UBERON:0001007!1.78e-09!155;UBERON:0001555!1.78e-09!155;UBERON:0007026!1.78e-09!155;UBERON:0000072!5.56e-09!46;UBERON:0000077!6.61e-09!130;UBERON:0005157!7.06e-09!51;UBERON:0005178!1.90e-08!34;UBERON:0002224!1.90e-08!34;UBERON:0004802!2.60e-08!19;UBERON:0000115!2.60e-08!19;UBERON:0008947!4.35e-08!38;UBERON:0003258!4.35e-08!38;UBERON:0004921!7.37e-08!129;UBERON:0004185!7.37e-08!129;UBERON:0005181!1.00e-07!35;UBERON:0004807!3.49e-07!28;UBERON:0002048!8.58e-07!22;UBERON:0000117!8.58e-07!22;UBERON:0000171!8.58e-07!22;UBERON:0000170!8.58e-07!22;UBERON:0005597!8.58e-07!22;UBERON:0000118!8.58e-07!22;UBERON:0001041!9.69e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0004802;2.97e-10;19!UBERON:0000115;2.97e-10;19!UBERON:0004807;2.95e-09;22!UBERON:0005911;9.50e-09;36!UBERON:0005178;1.32e-08;34!UBERON:0002224;1.32e-08;34!UBERON:0002048;3.76e-08;22!UBERON:0000117;3.76e-08;22!UBERON:0000171;3.76e-08;22!UBERON:0000170;3.76e-08;22!UBERON:0005181;3.92e-08;35!UBERON:0000072;4.25e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,1.90e-10,19;UBERON:0000115,1.90e-10,19;UBERON:0005178,1.51e-09,34;UBERON:0002224,1.51e-09,34;UBERON:0004119,4.56e-09,160;UBERON:0000925,4.56e-09,160;UBERON:0006595,4.56e-09,160;UBERON:0005181,4.56e-09,35;UBERON:0001004,5.92e-09,74;UBERON:0005153,8.14e-09,37;UBERON:0000065,1.20e-08,54;UBERON:0005157,2.47e-08,47;UBERON:0002048,2.59e-08,22;UBERON:0000117,2.59e-08,22;UBERON:0000171,2.59e-08,22;UBERON:0000170,2.59e-08,22;UBERON:0005597,2.59e-08,22;UBERON:0000118,2.59e-08,22;UBERON:0004807,9.35e-08,28;UBERON:0000072,1.09e-07,47;UBERON:0000915,2.22e-07,52;UBERON:0008947,4.47e-07,38;UBERON:0003258,4.47e-07,38 | |||
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| ||
|short_description=p1@ENST00000424948 | |short_description=p1@ENST00000424948 | ||
}} | }} |
Latest revision as of 08:25, 28 July 2015
Short description: | p1@ENST00000424948 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000424948_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_ENST00000424948_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.01e-23 | 253 |
epithelial cell of lung | 1.90e-10 | 19 |
squamous epithelial cell | 5.78e-10 | 63 |
endo-epithelial cell | 6.37e-10 | 42 |
respiratory epithelial cell | 6.10e-08 | 13 |
endodermal cell | 3.72e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 1.90e-10 | 19 |
lung epithelium | 1.90e-10 | 19 |
thoracic cavity element | 1.51e-09 | 34 |
thoracic cavity | 1.51e-09 | 34 |
endoderm-derived structure | 4.56e-09 | 160 |
endoderm | 4.56e-09 | 160 |
presumptive endoderm | 4.56e-09 | 160 |
thoracic segment organ | 4.56e-09 | 35 |
respiratory system | 5.92e-09 | 74 |
epithelial bud | 8.14e-09 | 37 |
respiratory tract | 1.20e-08 | 54 |
epithelial fold | 2.47e-08 | 47 |
lung | 2.59e-08 | 22 |
respiratory tube | 2.59e-08 | 22 |
respiration organ | 2.59e-08 | 22 |
pair of lungs | 2.59e-08 | 22 |
lung primordium | 2.59e-08 | 22 |
lung bud | 2.59e-08 | 22 |
respiratory system epithelium | 9.35e-08 | 28 |
segment of respiratory tract | 1.09e-07 | 47 |
thoracic segment of trunk | 2.22e-07 | 52 |
respiratory primordium | 4.47e-07 | 38 |
endoderm of foregut | 4.47e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.60e-20 | 106 |
cell type cancer | 3.78e-18 | 143 |
cancer | 8.62e-14 | 235 |
disease of cellular proliferation | 6.41e-13 | 239 |
squamous cell carcinoma | 2.32e-11 | 14 |
respiratory system cancer | 2.55e-09 | 16 |
lung cancer | 1.95e-08 | 15 |
adenocarcinoma | 2.82e-08 | 25 |