FFCP PHASE1:Hg19::chr2:200325204..200325243,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23314 | |EntrezGene=23314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=21637 | |HGNC=21637 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=11bp_to_uc002uuz.1_5end | |association_with_transcript=11bp_to_uc002uuz.1_5end | ||
|cluster_id=chr2:200325204..200325243,- | |||
|coexpression_cluster_id=C10 | |coexpression_cluster_id=C10 | ||
|description=CAGE_peak_7_at_SATB2_5end | |description=CAGE_peak_7_at_SATB2_5end | ||
|id=chr2:200325204..200325243,- | |id=chr2:200325204..200325243,- | ||
|ontology_enrichment_celltype=CL:0000055!4.40e-10!180;CL:0002620!2.04e-09!23;CL:0000359!2.91e-08!32 | |ontology_enrichment_celltype=CL:0000055!4.40e-10!180;CL:0002620!2.04e-09!23;CL:0000359!2.91e-08!32 | ||
|ontology_enrichment_celltype_v019=CL:0002593;7.01e-09;2!CL:0002595;6.99e-08;5!CL:0000540;7.27e-07;6!CL:0000404;7.27e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002593,6.24e-09,2;CL:0000047,7.78e-09,8;CL:0002595,6.54e-08,5;CL:0000540,5.62e-07,6;CL:0000031,5.62e-07,6;CL:0000404,5.62e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;7.27e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!1.59e-11!20;UBERON:0000956!2.39e-11!25;UBERON:0000203!2.39e-11!25;UBERON:0002619!3.44e-11!22;UBERON:0001869!4.14e-10!32;UBERON:0001893!3.73e-09!34;UBERON:0002791!2.09e-08!33;UBERON:0002020!5.39e-08!34;UBERON:0003528!5.39e-08!34;UBERON:0000475!1.33e-07!365;UBERON:0001017!3.70e-07!82;UBERON:0002199!5.27e-07!45;UBERON:0002416!5.27e-07!45;UBERON:0002097!6.71e-07!40 | |ontology_enrichment_uberon=UBERON:0001950!1.59e-11!20;UBERON:0000956!2.39e-11!25;UBERON:0000203!2.39e-11!25;UBERON:0002619!3.44e-11!22;UBERON:0001869!4.14e-10!32;UBERON:0001893!3.73e-09!34;UBERON:0002791!2.09e-08!33;UBERON:0002020!5.39e-08!34;UBERON:0003528!5.39e-08!34;UBERON:0000475!1.33e-07!365;UBERON:0001017!3.70e-07!82;UBERON:0002199!5.27e-07!45;UBERON:0002416!5.27e-07!45;UBERON:0002097!6.71e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.32e-17;20!UBERON:0002619;6.67e-16;22!UBERON:0001869;1.72e-14;32!UBERON:0000956;7.70e-14;25!UBERON:0000203;7.70e-14;25!UBERON:0001893;1.20e-12;34!UBERON:0002791;1.51e-11;32!UBERON:0003528;1.12e-10;34!UBERON:0002020;1.12e-10;34!UBERON:0002780;1.49e-09;41!UBERON:0001890;1.49e-09;41!UBERON:0002456;7.01e-09;2!UBERON:0002021;5.25e-08;5!UBERON:0001872;5.51e-08;5!UBERON:0003834;6.99e-08;5!UBERON:0001533;6.99e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.31e-17,20;UBERON:0002619,6.62e-16,22;UBERON:0001869,3.61e-15,32;UBERON:0001893,3.72e-14,34;UBERON:0000956,7.65e-14,25;UBERON:0000203,7.65e-14,25;UBERON:0002791,1.08e-12,32;UBERON:0003528,7.67e-12,34;UBERON:0002020,7.67e-12,34;UBERON:0001016,1.39e-11,89;UBERON:0002780,2.25e-11,41;UBERON:0001890,2.25e-11,41;UBERON:0003080,2.25e-11,41;UBERON:0006240,2.25e-11,41;UBERON:0001017,2.22e-10,81;UBERON:0002456,6.24e-09,2;UBERON:0000073,2.67e-08,53;UBERON:0002616,2.67e-08,53;UBERON:0001872,5.15e-08,5;UBERON:0003834,6.54e-08,5;UBERON:0001533,6.54e-08,5;UBERON:0002021,7.03e-08,5;UBERON:0001049,9.77e-08,56;UBERON:0005068,9.77e-08,56;UBERON:0006241,9.77e-08,56;UBERON:0007135,9.77e-08,56;UBERON:0000955,4.64e-07,68;UBERON:0006238,4.64e-07,68;UBERON:0003056,6.37e-07,61 | |||
|phase1_expression=0.726713517082227,0.428201047781966,0.422863212287913,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0.246242116153576,0.204000691244253,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45650098894541,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0.448346041655403,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0.250237039743928,0.277064115484183,0.438977620880838,0.30648779579902,0.751190294532984,0,1.25572744982203,0,0.423863802319124,0.600182192168805,0,0.772921620136887,0.558350568994769,1.18143432568886,0.584622030967192,1.00973509697646,0.0920498986422993,0,0.710019185033229,1.10827308050404,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0.723906533337896,0,0.537182889719687,0,0,0,0,0,11.712586847186,3.09315525111078,9.88345965472658,1.91381625495949,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0,1.68808170616869,0.561320188866147,0,0,0,0,0.308419387605311,0,0.328508624055237,0,0.116210378459959,0.120859449591622,0.40101294060657,0.276242966807689,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.75434805755208,4.7855509953941,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0,0,0,0.94443704049192,0,0.616067160352178,0.532306030317022,1.73986598415015,0.55597265731176,0.286249773483982,0,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0,1.01091240786658,1.58510321173008,0.842516912477962,0,1.94970791705028,1.05650146756755,0,0,0,0,0,3.5076070820301,0,0,0.202910376962704,0.30982349809975,0,0,0,1.07001315444375,0,0,0,0,0,0,0,0,0,0,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0.28853842595289,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0.481764225311099,0,0.851692475380653,0,3.07240764308458,6.03925491309523,5.33917253478107,0.19538809540204,0,0,0.811367035427949,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0.19924798825107,0.276283915531148,0,0,0,1.86623752597084,0.179736702294654,0.358042349351218,0,0,0,0,0,0.185536196323703,41.9188975802508,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0.23056390438806,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,24.7918936920697,0.442306057399416,0,0,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0.277349346026277,0,0.0979923974143777,0,0,1.0319161948297,0,0.0730893170861856,0.164230914106418,0,0.0882561266915003,0,0,0,1.26621591911757,0,0.0801588202515337,0,0,0,0,0,2.0167671718341,0.372757606696298,0,0.407712618220842,0.209205692624666,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0.196854963029498,0,0,0.136203406111576,0,0,0,0,0,1.88323625639876,0,0.0788057072991982,0.157363764404994,0.105600336519406,0,0,0,0,0,2.17199840701485,0.864221491201268,0.326587360109409,0,0,0.340776043570843,0.113312091520126,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976210119215705,0,0,0,0,0.553394539744923,0,0.758245587708239,0.285465333544967,0,0,0.144921028610825,0,0.233713309847224,0.554805861502613,0.189403005275089,0.251567901752575,0,0,0.151230923763239,0.15543720058278,0,0.159296767163702,0,0.621051827505038,0,0.265841714557995,1.5652351854352,0,0,1.62748293281865,0.363697318405119,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0.245772908753719,0.633936370075881,0,0.960225567247268,0.344429959321631,0,0.368211900503681,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,1.22035527683273,1.41696576325585,0.159633859057151,1.02558182120378,43.1042600539138,0.345786262321089,0.807378228159255,0,0.392590874004102,0.11796972334774,0,0,1.1441462864015,0,3.97832444232549,0,0.20170506870352,0.781514011233092,0,0.163771917510097,0.295712172434091,1.35075169236789,1.56215619722769,0.413373593002368,0.634158101939068,35.006387777166,0,1.48863353516788,0.175871244359621,0,0,0,0,0,0,0,0.171488009437418,0.135939465953663,1.24968269769413,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,1.77498001095848,1.19298766662821,0,0,0.31020638566432,0,0,0,0.121917924982269,0,0,0,0,0,1.98950775161368,0.237840181555137,0,0,0,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0.169927114687817,0,0,0,0,0,0.240724100067505,0,0,0,0,1.22384682343646,28.7991455624649,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0.747091421144008,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0.726713517082227,0.428201047781966,0.422863212287913,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0.246242116153576,0.204000691244253,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45650098894541,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0.448346041655403,0.117434498643765,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0.250237039743928,0.277064115484183,0.438977620880838,0.30648779579902,0.751190294532984,0,1.25572744982203,0,0.423863802319124,0.600182192168805,0,0.772921620136887,0.558350568994769,1.18143432568886,0.584622030967192,1.00973509697646,0.0920498986422993,0,0.710019185033229,1.10827308050404,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,1.14861935834114,0,0.723906533337896,0,0.537182889719687,0,0,0,0,0,11.712586847186,3.09315525111078,9.88345965472658,1.91381625495949,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0,1.68808170616869,0.561320188866147,0,0,0,0,0.308419387605311,0,0.328508624055237,0,0.116210378459959,0.120859449591622,0.40101294060657,0.276242966807689,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.75434805755208,4.7855509953941,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0,0,0,0.94443704049192,0,0.616067160352178,0.532306030317022,1.73986598415015,0.55597265731176,0.286249773483982,0,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0,1.01091240786658,1.58510321173008,0.842516912477962,0,1.94970791705028,1.05650146756755,0,0,0,0,0,3.5076070820301,0,0,0.202910376962704,0.30982349809975,0,0,0,1.07001315444375,0,0,0,0,0,0,0,0,0,0,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0.28853842595289,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0.481764225311099,0,0.851692475380653,0,3.07240764308458,6.03925491309523,5.33917253478107,0.19538809540204,0,0,0.811367035427949,0,0,0,0,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0.19924798825107,0.276283915531148,0,0,0,1.86623752597084,0.179736702294654,0.358042349351218,0,0,0,0,0,0.185536196323703,41.9188975802508,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0.23056390438806,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,24.7918936920697,0.442306057399416,0,0,0,0.330991955875499,0.313932918407225,0,0.284609546029793,0.277349346026277,0,0.0979923974143777,0,0,1.0319161948297,0,0.0730893170861856,0.164230914106418,0,0.0882561266915003,0,0,0,1.26621591911757,0,0.0801588202515337,0,0,0,0,0,2.0167671718341,0.372757606696298,0,0.407712618220842,0.209205692624666,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0.196854963029498,0,0,0.136203406111576,0,0,0,0,0,1.88323625639876,0,0.0788057072991982,0.157363764404994,0.105600336519406,0,0,0,0,0,2.17199840701485,0.864221491201268,0.326587360109409,0,0,0.340776043570843,0.113312091520126,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976210119215705,0,0,0,0,0.553394539744923,0,0.758245587708239,0.285465333544967,0,0,0.144921028610825,0,0.233713309847224,0.554805861502613,0.189403005275089,0.251567901752575,0,0,0.151230923763239,0.15543720058278,0,0.159296767163702,0,0.621051827505038,0,0.265841714557995,1.5652351854352,0,0,1.62748293281865,0.363697318405119,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0.245772908753719,0.633936370075881,0,0.960225567247268,0.344429959321631,0,0.368211900503681,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,1.22035527683273,1.41696576325585,0.159633859057151,1.02558182120378,43.1042600539138,0.345786262321089,0.807378228159255,0,0.392590874004102,0.11796972334774,0,0,1.1441462864015,0,3.97832444232549,0,0.20170506870352,0.781514011233092,0,0.163771917510097,0.295712172434091,1.35075169236789,1.56215619722769,0.413373593002368,0.634158101939068,35.006387777166,0,1.48863353516788,0.175871244359621,0,0,0,0,0,0,0,0.171488009437418,0.135939465953663,1.24968269769413,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,1.77498001095848,1.19298766662821,0,0,0.31020638566432,0,0,0,0.121917924982269,0,0,0,0,0,1.98950775161368,0.237840181555137,0,0,0,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0.169927114687817,0,0,0,0,0,0.240724100067505,0,0,0,0,1.22384682343646,28.7991455624649,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0.747091421144008,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p7@SATB2 | |short_description=p7@SATB2 | ||
}} | }} |
Latest revision as of 09:27, 19 September 2015
Short description: | p7@SATB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SATB2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 11bp_to_uc002uuz.1_5end |
EntrezGene: | SATB2 |
HGNC: | 21637 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the internal thoracic artery | 6.24e-09 | 2 |
neuronal stem cell | 7.78e-09 | 8 |
smooth muscle cell of the subclavian artery | 6.54e-08 | 5 |
neuron | 5.62e-07 | 6 |
neuroblast | 5.62e-07 | 6 |
electrically signaling cell | 5.62e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.31e-17 | 20 |
regional part of cerebral cortex | 6.62e-16 | 22 |
cerebral hemisphere | 3.61e-15 | 32 |
telencephalon | 3.72e-14 | 34 |
cerebral cortex | 7.65e-14 | 25 |
pallium | 7.65e-14 | 25 |
regional part of telencephalon | 1.08e-12 | 32 |
brain grey matter | 7.67e-12 | 34 |
gray matter | 7.67e-12 | 34 |
nervous system | 1.39e-11 | 89 |
regional part of forebrain | 2.25e-11 | 41 |
forebrain | 2.25e-11 | 41 |
anterior neural tube | 2.25e-11 | 41 |
future forebrain | 2.25e-11 | 41 |
central nervous system | 2.22e-10 | 81 |
internal thoracic artery | 6.24e-09 | 2 |
regional part of nervous system | 2.67e-08 | 53 |
regional part of brain | 2.67e-08 | 53 |
parietal lobe | 5.15e-08 | 5 |
thoracic segment blood vessel | 6.54e-08 | 5 |
subclavian artery | 6.54e-08 | 5 |
occipital lobe | 7.03e-08 | 5 |
neural tube | 9.77e-08 | 56 |
neural rod | 9.77e-08 | 56 |
future spinal cord | 9.77e-08 | 56 |
neural keel | 9.77e-08 | 56 |
brain | 4.64e-07 | 68 |
future brain | 4.64e-07 | 68 |
pre-chordal neural plate | 6.37e-07 | 61 |