FFCP PHASE1:Hg19::chr1:23953841..23953869,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:23953841..23953869,+
|short_description=p1@MDS2
|description=CAGE_peak_1_at_MDS2_5end
|association_with_transcript=17bp_to_ENST00000374555,NR_027042_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=259283 | |EntrezGene=259283 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29633 | |HGNC=29633 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NDY4 | |UniProt=Q8NDY4 | ||
|association_with_transcript=17bp_to_ENST00000374555,NR_027042_5end | |||
|cluster_id=chr1:23953841..23953869,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_MDS2_5end | |||
|id=chr1:23953841..23953869,+ | |||
|ontology_enrichment_celltype=CL:0000542!6.68e-42!53;CL:0000051!6.68e-42!53;CL:0000838!2.01e-40!52;CL:0000791!1.58e-34!18;CL:0000789!1.58e-34!18;CL:0002420!1.58e-34!18;CL:0002419!1.58e-34!18;CL:0000790!1.58e-34!18;CL:0000625!1.06e-23!11;CL:0000084!2.08e-23!25;CL:0000827!2.08e-23!25;CL:0002087!4.19e-22!119;CL:0000738!4.84e-18!140;CL:0002031!6.57e-16!124;CL:0000624!8.74e-15!6;CL:0000945!1.35e-13!24;CL:0000826!1.35e-13!24;CL:0000037!1.54e-12!172;CL:0000566!1.54e-12!172;CL:0000988!3.05e-11!182;CL:0000236!4.25e-11!14;CL:0002032!7.03e-11!165;CL:0000837!7.03e-11!165;CL:0000898!2.84e-08!3;CL:0000842!5.69e-08!3;CL:0000623!2.83e-07!3;CL:0000825!2.83e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.03e-44;18!CL:0000789;1.03e-44;18!CL:0002419;1.03e-44;18!CL:0000084;3.86e-31;25!CL:0000625;2.24e-26;11!CL:0000624;2.26e-23;6!CL:0000542;6.06e-22;53!CL:0000236;8.26e-16;13!CL:0000898;1.24e-12;3!CL:0000226;4.12e-12;3!CL:0000842;4.12e-12;3!CL:0000623;3.81e-11;3!CL:0000815;5.61e-09;2!CL:0000792;5.61e-09;2!CL:0002677;5.61e-09;2!CL:0000945;5.32e-08;24!CL:0002087;2.99e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.48e-45,18;CL:0000789,8.48e-45,18;CL:0002420,8.48e-45,18;CL:0002419,8.48e-45,18;CL:0000790,8.48e-45,18;CL:0000838,2.54e-41,52;CL:0000542,2.05e-40,53;CL:0000051,2.05e-40,53;CL:0000084,3.36e-31,25;CL:0000827,3.36e-31,25;CL:0000625,1.87e-26,11;CL:0000624,2.23e-23,6;CL:0002087,1.55e-19,115;CL:0000738,1.86e-15,136;CL:0000236,1.30e-14,14;CL:0002031,4.73e-14,120;CL:0000898,1.24e-12,3;CL:0000226,3.90e-12,3;CL:0000842,3.90e-12,3;CL:0000037,3.20e-11,168;CL:0000623,5.46e-11,3;CL:0000825,5.46e-11,3;CL:0000988,2.59e-10,177;CL:0000815,5.72e-09,2;CL:0000792,5.72e-09,2;CL:0002677,5.72e-09,2;CL:0002032,5.90e-09,161;CL:0000837,5.90e-09,161;CL:0000945,5.18e-08,24;CL:0000826,5.18e-08,24 | |||
|ontology_enrichment_development_v019=CL:0000790;1.03e-44;18!CL:0000051;6.06e-22;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.58e-20!15;UBERON:0000179!3.58e-20!15;UBERON:0000463!3.58e-20!15;UBERON:0004177!1.38e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.08e-33;15!UBERON:0000179;3.08e-33;15!UBERON:0000463;3.08e-33;15!UBERON:0002390;9.26e-16;32!UBERON:0002193;9.29e-12;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.52e-33,15;UBERON:0000179,4.52e-33,15;UBERON:0000463,4.52e-33,15 | |||
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| ||
|short_description=p1@MDS2 | |||
}} | }} |
Latest revision as of 16:17, 16 September 2015
Short description: | p1@MDS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MDS2_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 17bp_to_ENST00000374555, NR_027042_5end |
EntrezGene: | MDS2 |
HGNC: | 29633 |
UniProt: | Q8NDY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.48e-45 | 18 |
alpha-beta T cell | 8.48e-45 | 18 |
immature T cell | 8.48e-45 | 18 |
mature T cell | 8.48e-45 | 18 |
immature alpha-beta T cell | 8.48e-45 | 18 |
lymphoid lineage restricted progenitor cell | 2.54e-41 | 52 |
lymphocyte | 2.05e-40 | 53 |
common lymphoid progenitor | 2.05e-40 | 53 |
T cell | 3.36e-31 | 25 |
pro-T cell | 3.36e-31 | 25 |
CD8-positive, alpha-beta T cell | 1.87e-26 | 11 |
CD4-positive, alpha-beta T cell | 2.23e-23 | 6 |
nongranular leukocyte | 1.55e-19 | 115 |
leukocyte | 1.86e-15 | 136 |
B cell | 1.30e-14 | 14 |
hematopoietic lineage restricted progenitor cell | 4.73e-14 | 120 |
naive T cell | 1.24e-12 | 3 |
single nucleate cell | 3.90e-12 | 3 |
mononuclear cell | 3.90e-12 | 3 |
hematopoietic stem cell | 3.20e-11 | 168 |
natural killer cell | 5.46e-11 | 3 |
pro-NK cell | 5.46e-11 | 3 |
hematopoietic cell | 2.59e-10 | 177 |
regulatory T cell | 5.72e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.72e-09 | 2 |
naive regulatory T cell | 5.72e-09 | 2 |
hematopoietic oligopotent progenitor cell | 5.90e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.90e-09 | 161 |
lymphocyte of B lineage | 5.18e-08 | 24 |
pro-B cell | 5.18e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
blood | 4.52e-33 | 15 |
haemolymphatic fluid | 4.52e-33 | 15 |
organism substance | 4.52e-33 | 15 |