FFCP PHASE1:Hg19::chr1:35333189..35333201,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:35333189..35333201,-
|short_description=p@chr1:35333189..35333201,-
|description=CAGE_peak_at_chr1:35333189..35333201,-
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:35333189..35333201,- | |||
|coexpression_cluster_id=C430 | |||
|description=CAGE_peak_at_chr1:35333189..35333201,- | |||
|id=chr1:35333189..35333201,- | |||
|ontology_enrichment_celltype=CL:0002057!8.85e-49!42;CL:0000860!1.76e-44!45;CL:0000763!2.63e-40!112;CL:0000049!2.63e-40!112;CL:0002194!9.28e-38!63;CL:0000576!9.28e-38!63;CL:0000040!9.28e-38!63;CL:0000559!9.28e-38!63;CL:0002009!1.09e-37!65;CL:0000766!1.90e-35!76;CL:0000557!4.97e-35!71;CL:0000839!2.37e-32!70;CL:0000037!9.06e-26!172;CL:0000566!9.06e-26!172;CL:0002032!1.09e-23!165;CL:0000837!1.09e-23!165;CL:0000988!4.71e-23!182;CL:0002087!7.45e-19!119;CL:0000738!5.87e-18!140;CL:0002031!2.13e-15!124;CL:0002393!6.07e-07!9;CL:0002397!6.07e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.64e-87;33!CL:0002057;3.64e-87;33!CL:0000473;1.17e-61;39!CL:0000234;1.17e-61;39!CL:0000576;6.76e-50;48!CL:0000766;4.70e-30;69!CL:0000763;2.42e-22;100!CL:0000767;2.41e-11;3!CL:0002087;7.56e-11;104!CL:0000738;6.75e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.01e-89,42;CL:0002057,1.01e-89,42;CL:0000473,2.32e-77,48;CL:0000234,2.32e-77,48;CL:0002194,4.64e-60,59;CL:0000576,4.64e-60,59;CL:0000040,4.64e-60,59;CL:0000559,4.64e-60,59;CL:0002009,7.92e-58,61;CL:0000766,1.28e-57,72;CL:0000763,1.92e-55,108;CL:0000049,1.92e-55,108;CL:0000557,2.06e-55,67;CL:0000839,7.86e-53,66;CL:0002032,1.08e-33,161;CL:0000837,1.08e-33,161;CL:0000037,1.38e-33,168;CL:0000988,2.53e-31,177;CL:0002087,1.46e-28,115;CL:0000738,6.57e-28,136;CL:0002031,3.15e-25,120;CL:0000767,2.42e-11,3;CL:0000134,6.25e-11,354;CL:0002320,1.66e-10,361;CL:0000219,5.08e-09,386;CL:0000034,8.34e-08,441;CL:0000048,3.22e-07,427;CL:0000723,5.68e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;8.12e-66;42!CL:0000049;8.67e-18;108 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.14e-35!102;UBERON:0003061!9.14e-35!102;UBERON:0002193!2.47e-31!112;UBERON:0002371!1.15e-30!80;UBERON:0001474!2.40e-27!86;UBERON:0007023!4.52e-26!115;UBERON:0002405!3.51e-25!115;UBERON:0004765!8.16e-22!101;UBERON:0001434!8.16e-22!101;UBERON:0003081!3.39e-13!216;UBERON:0001049!4.25e-10!57;UBERON:0005068!4.25e-10!57;UBERON:0006241!4.25e-10!57;UBERON:0007135!4.25e-10!57;UBERON:0002204!7.32e-09!167;UBERON:0002616!8.10e-08!59;UBERON:0000062!1.91e-07!511;UBERON:0002780!2.42e-07!41;UBERON:0001890!2.42e-07!41;UBERON:0006240!2.42e-07!41;UBERON:0003075!4.47e-07!86;UBERON:0007284!4.47e-07!86;UBERON:0003080!4.74e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.59e-48,76;UBERON:0002405,1.73e-45,93;UBERON:0002390,6.24e-45,98;UBERON:0003061,6.24e-45,98;UBERON:0001474,1.03e-43,82;UBERON:0002193,2.31e-42,108;UBERON:0004765,4.69e-39,90;UBERON:0001434,2.84e-34,100;UBERON:0003081,7.51e-18,203;UBERON:0002204,5.50e-17,167;UBERON:0002384,6.25e-10,371;UBERON:0000926,8.35e-09,315;UBERON:0004120,8.35e-09,315;UBERON:0006603,8.35e-09,315 | |||
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| ||
|short_description=p@chr1:35333189..35333201,- | |||
}} | }} |
Latest revision as of 07:34, 28 July 2015
Short description: | p@chr1:35333189..35333201, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:35333189..35333201, - |
Coexpression cluster: | C430_acute_giant_chronic_CD34_CD133_melanoma_skeletal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.01e-89 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.01e-89 | 42 |
defensive cell | 2.32e-77 | 48 |
phagocyte | 2.32e-77 | 48 |
monopoietic cell | 4.64e-60 | 59 |
monocyte | 4.64e-60 | 59 |
monoblast | 4.64e-60 | 59 |
promonocyte | 4.64e-60 | 59 |
macrophage dendritic cell progenitor | 7.92e-58 | 61 |
myeloid leukocyte | 1.28e-57 | 72 |
myeloid cell | 1.92e-55 | 108 |
common myeloid progenitor | 1.92e-55 | 108 |
granulocyte monocyte progenitor cell | 2.06e-55 | 67 |
myeloid lineage restricted progenitor cell | 7.86e-53 | 66 |
hematopoietic oligopotent progenitor cell | 1.08e-33 | 161 |
hematopoietic multipotent progenitor cell | 1.08e-33 | 161 |
hematopoietic stem cell | 1.38e-33 | 168 |
hematopoietic cell | 2.53e-31 | 177 |
nongranular leukocyte | 1.46e-28 | 115 |
leukocyte | 6.57e-28 | 136 |
hematopoietic lineage restricted progenitor cell | 3.15e-25 | 120 |
basophil | 2.42e-11 | 3 |
mesenchymal cell | 6.25e-11 | 354 |
connective tissue cell | 1.66e-10 | 361 |
motile cell | 5.08e-09 | 386 |
stem cell | 8.34e-08 | 441 |
multi fate stem cell | 3.22e-07 | 427 |
somatic stem cell | 5.68e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.59e-48 | 76 |
immune system | 1.73e-45 | 93 |
hematopoietic system | 6.24e-45 | 98 |
blood island | 6.24e-45 | 98 |
bone element | 1.03e-43 | 82 |
hemolymphoid system | 2.31e-42 | 108 |
skeletal element | 4.69e-39 | 90 |
skeletal system | 2.84e-34 | 100 |
lateral plate mesoderm | 7.51e-18 | 203 |
musculoskeletal system | 5.50e-17 | 167 |
connective tissue | 6.25e-10 | 371 |
mesoderm | 8.35e-09 | 315 |
mesoderm-derived structure | 8.35e-09 | 315 |
presumptive mesoderm | 8.35e-09 | 315 |