FFCP PHASE1:Hg19::chr2:109150887..109150933,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt=C9JF46 | |UniProt=C9JF46 | ||
|association_with_transcript=0bp_to_ENST00000428064_5end | |association_with_transcript=0bp_to_ENST00000428064_5end | ||
|cluster_id=chr2:109150887..109150933,+ | |||
|description=CAGE_peak_1_at_LIMS1_5end | |description=CAGE_peak_1_at_LIMS1_5end | ||
|id=chr2:109150887..109150933,+ | |id=chr2:109150887..109150933,+ | ||
|ontology_enrichment_celltype=CL:0000012!3.91e-22!682;CL:0000548!2.57e-21!679;CL:0000004!2.57e-21!679;CL:0000255!2.57e-21!679;CL:0002371!4.85e-20!591;CL:0000144!4.95e-20!625;CL:0000048!6.48e-17!430;CL:0000723!1.14e-15!436;CL:0000034!1.27e-14!444;CL:0002320!4.64e-14!365;CL:0000134!1.08e-13!358;CL:0002057!7.42e-13!42;CL:0000219!9.42e-13!390;CL:0000063!4.21e-11!578;CL:0000766!6.52e-11!76;CL:0000860!1.12e-10!45;CL:0000763!2.18e-10!112;CL:0000049!2.18e-10!112;CL:0000003!3.25e-10!722;CL:0000557!4.33e-10!71;CL:0002009!5.12e-09!65;CL:0000839!1.77e-08!70;CL:0002194!2.00e-08!63;CL:0000576!2.00e-08!63;CL:0000040!2.00e-08!63;CL:0000559!2.00e-08!63 | |ontology_enrichment_celltype=CL:0000012!3.91e-22!682;CL:0000548!2.57e-21!679;CL:0000004!2.57e-21!679;CL:0000255!2.57e-21!679;CL:0002371!4.85e-20!591;CL:0000144!4.95e-20!625;CL:0000048!6.48e-17!430;CL:0000723!1.14e-15!436;CL:0000034!1.27e-14!444;CL:0002320!4.64e-14!365;CL:0000134!1.08e-13!358;CL:0002057!7.42e-13!42;CL:0000219!9.42e-13!390;CL:0000063!4.21e-11!578;CL:0000766!6.52e-11!76;CL:0000860!1.12e-10!45;CL:0000763!2.18e-10!112;CL:0000049!2.18e-10!112;CL:0000003!3.25e-10!722;CL:0000557!4.33e-10!71;CL:0002009!5.12e-09!65;CL:0000839!1.77e-08!70;CL:0002194!2.00e-08!63;CL:0000576!2.00e-08!63;CL:0000040!2.00e-08!63;CL:0000559!2.00e-08!63 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.44e-13;33!CL:0002057;8.44e-13;33!CL:0000473;7.53e-09;39!CL:0000234;7.53e-09;39!CL:0000576;2.22e-07;48 | |ontology_enrichment_celltype_v019=CL:0000860;8.44e-13;33!CL:0002057;8.44e-13;33!CL:0000473;7.53e-09;39!CL:0000234;7.53e-09;39!CL:0000576;2.22e-07;48 | ||
|ontology_enrichment_celltype_v019_2=CL:0000048,5.11e-18,427;CL:0000723,1.01e-16,433;CL:0000034,1.23e-15,441;CL:0002320,7.87e-15,361;CL:0000134,1.85e-14,354;CL:0000219,1.85e-13,386;CL:0000860,7.42e-13,42;CL:0002057,7.42e-13,42;CL:0000766,3.07e-12,72;CL:0000557,2.11e-11,67;CL:0000763,2.32e-11,108;CL:0000049,2.32e-11,108;CL:0000473,8.39e-11,48;CL:0000234,8.39e-11,48;CL:0002009,2.66e-10,61;CL:0002194,1.14e-09,59;CL:0000576,1.14e-09,59;CL:0000040,1.14e-09,59;CL:0000559,1.14e-09,59;CL:0000839,1.23e-09,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.18e-09;42 | |ontology_enrichment_development_v019=CL:0002057;1.18e-09;42 | ||
|ontology_enrichment_disease=DOID:2394!6.80e-07!14 | |ontology_enrichment_disease=DOID:2394!6.80e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;6.58e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;6.58e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,6.80e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002384!5.99e-14!375;UBERON:0000926!2.15e-11!448;UBERON:0004120!2.15e-11!448;UBERON:0006603!2.15e-11!448;UBERON:0002204!6.77e-11!167;UBERON:0004765!1.80e-10!101;UBERON:0001434!1.80e-10!101;UBERON:0001474!2.71e-09!86;UBERON:0002405!4.54e-09!115;UBERON:0002371!9.09e-09!80 | |ontology_enrichment_uberon=UBERON:0002384!5.99e-14!375;UBERON:0000926!2.15e-11!448;UBERON:0004120!2.15e-11!448;UBERON:0006603!2.15e-11!448;UBERON:0002204!6.77e-11!167;UBERON:0004765!1.80e-10!101;UBERON:0001434!1.80e-10!101;UBERON:0001474!2.71e-09!86;UBERON:0002405!4.54e-09!115;UBERON:0002371!9.09e-09!80 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.04e-14,371;UBERON:0002204,2.98e-12,167;UBERON:0001434,8.12e-12,100;UBERON:0004765,1.96e-11,90;UBERON:0001474,2.28e-10,82;UBERON:0000926,4.56e-10,315;UBERON:0004120,4.56e-10,315;UBERON:0006603,4.56e-10,315;UBERON:0002371,7.53e-10,76;UBERON:0002405,9.49e-09,93 | |||
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|short_description=p1@LIMS1 | |short_description=p1@LIMS1 | ||
}} | }} |
Latest revision as of 06:12, 16 September 2015
Short description: | p1@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIMS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000428064_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | C9JF46 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 5.11e-18 | 427 |
somatic stem cell | 1.01e-16 | 433 |
stem cell | 1.23e-15 | 441 |
connective tissue cell | 7.87e-15 | 361 |
mesenchymal cell | 1.85e-14 | 354 |
motile cell | 1.85e-13 | 386 |
classical monocyte | 7.42e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.42e-13 | 42 |
myeloid leukocyte | 3.07e-12 | 72 |
granulocyte monocyte progenitor cell | 2.11e-11 | 67 |
myeloid cell | 2.32e-11 | 108 |
common myeloid progenitor | 2.32e-11 | 108 |
defensive cell | 8.39e-11 | 48 |
phagocyte | 8.39e-11 | 48 |
macrophage dendritic cell progenitor | 2.66e-10 | 61 |
monopoietic cell | 1.14e-09 | 59 |
monocyte | 1.14e-09 | 59 |
monoblast | 1.14e-09 | 59 |
promonocyte | 1.14e-09 | 59 |
myeloid lineage restricted progenitor cell | 1.23e-09 | 66 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.04e-14 | 371 |
musculoskeletal system | 2.98e-12 | 167 |
skeletal system | 8.12e-12 | 100 |
skeletal element | 1.96e-11 | 90 |
bone element | 2.28e-10 | 82 |
mesoderm | 4.56e-10 | 315 |
mesoderm-derived structure | 4.56e-10 | 315 |
presumptive mesoderm | 4.56e-10 | 315 |
bone marrow | 7.53e-10 | 76 |
immune system | 9.49e-09 | 93 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.80e-07 | 14 |