FFCP PHASE1:Hg19::chr3:124606262..124606286,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3693 | |EntrezGene=3693 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6160 | |HGNC=6160 | ||
|TSSclassifier=strong | |||
|UniProt=P18084 | |UniProt=P18084 | ||
|association_with_transcript=-118bp_to_ENST00000296181,NM_002213,uc003eho.2_5end | |association_with_transcript=-118bp_to_ENST00000296181,NM_002213,uc003eho.2_5end | ||
|cluster_id=chr3:124606262..124606286,- | |||
|description=CAGE_peak_4_at_ITGB5_5end | |description=CAGE_peak_4_at_ITGB5_5end | ||
|id=chr3:124606262..124606286,- | |id=chr3:124606262..124606286,- | ||
|ontology_enrichment_celltype=CL:0000055!4.12e-25!180;CL:0002321!6.51e-15!248;CL:0000220!1.01e-14!246;CL:0000057!4.37e-11!75;CL:0000680!4.04e-10!57;CL:0000056!4.04e-10!57;CL:0000355!4.04e-10!57;CL:0000222!5.31e-10!119;CL:0000548!7.81e-10!679;CL:0000004!7.81e-10!679;CL:0000255!7.81e-10!679;CL:0000183!3.81e-09!59;CL:0000012!4.44e-09!682;CL:0000187!5.41e-09!54;CL:0000393!9.65e-09!60;CL:0000211!9.65e-09!60;CL:0000066!7.51e-08!254;CL:0000192!1.14e-07!42;CL:0000514!1.14e-07!42;CL:0002334!2.06e-07!12 | |ontology_enrichment_celltype=CL:0000055!4.12e-25!180;CL:0002321!6.51e-15!248;CL:0000220!1.01e-14!246;CL:0000057!4.37e-11!75;CL:0000680!4.04e-10!57;CL:0000056!4.04e-10!57;CL:0000355!4.04e-10!57;CL:0000222!5.31e-10!119;CL:0000548!7.81e-10!679;CL:0000004!7.81e-10!679;CL:0000255!7.81e-10!679;CL:0000183!3.81e-09!59;CL:0000012!4.44e-09!682;CL:0000187!5.41e-09!54;CL:0000393!9.65e-09!60;CL:0000211!9.65e-09!60;CL:0000066!7.51e-08!254;CL:0000192!1.14e-07!42;CL:0000514!1.14e-07!42;CL:0002334!2.06e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002334;6.76e-08;12!CL:0000134;1.18e-07;55!CL:0000349;9.82e-07;19 | |ontology_enrichment_celltype_v019=CL:0002334;6.76e-08;12!CL:0000134;1.18e-07;55!CL:0000349;9.82e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.92e-12,250;CL:0000057,3.73e-11,76;CL:0000680,1.44e-09,58;CL:0000056,1.44e-09,58;CL:0000355,1.44e-09,58;CL:0000222,1.96e-08,121;CL:0000187,2.10e-08,55;CL:0000393,3.71e-08,61;CL:0000211,3.71e-08,61;CL:0002334,5.92e-08,12;CL:0000192,3.38e-07,43;CL:0000514,3.38e-07,43 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!1.97e-15!216;UBERON:0000468!1.62e-12!659;UBERON:0000486!1.72e-12!82;UBERON:0005256!2.56e-12!143;UBERON:0000475!4.73e-12!365;UBERON:0003104!1.19e-11!238;UBERON:0009142!1.19e-11!238;UBERON:0000914!2.92e-11!83;UBERON:0002329!2.92e-11!83;UBERON:0003077!2.92e-11!83;UBERON:0003059!2.92e-11!83;UBERON:0007282!2.92e-11!83;UBERON:0009618!2.92e-11!83;UBERON:0007285!2.92e-11!83;UBERON:0003914!1.39e-10!118;UBERON:0004290!1.47e-10!70;UBERON:0000467!2.30e-10!625;UBERON:0000480!3.25e-10!626;UBERON:0000490!7.77e-10!138;UBERON:0001134!8.60e-10!61;UBERON:0002036!8.60e-10!61;UBERON:0003082!8.60e-10!61;UBERON:0002385!1.22e-09!63;UBERON:0001015!1.22e-09!63;UBERON:0000383!1.22e-09!63;UBERON:0000483!1.52e-09!309;UBERON:0000119!2.17e-09!312;UBERON:0000481!2.66e-09!347;UBERON:0004872!5.94e-09!84;UBERON:0001048!2.44e-08!168;UBERON:0000922!4.19e-08!612;UBERON:0000926!4.30e-08!448;UBERON:0004120!4.30e-08!448;UBERON:0006603!4.30e-08!448;UBERON:0000923!7.78e-08!604;UBERON:0005291!7.78e-08!604;UBERON:0006598!7.78e-08!604;UBERON:0002532!7.78e-08!604;UBERON:0002050!9.88e-08!605;UBERON:0005423!9.88e-08!605;UBERON:0001637!1.04e-07!42;UBERON:0003509!1.04e-07!42;UBERON:0004572!1.04e-07!42;UBERON:0000466!1.80e-07!126;UBERON:0000464!4.64e-07!104;UBERON:0004573!4.81e-07!33;UBERON:0004571!4.81e-07!33 | |ontology_enrichment_uberon=UBERON:0002100!1.97e-15!216;UBERON:0000468!1.62e-12!659;UBERON:0000486!1.72e-12!82;UBERON:0005256!2.56e-12!143;UBERON:0000475!4.73e-12!365;UBERON:0003104!1.19e-11!238;UBERON:0009142!1.19e-11!238;UBERON:0000914!2.92e-11!83;UBERON:0002329!2.92e-11!83;UBERON:0003077!2.92e-11!83;UBERON:0003059!2.92e-11!83;UBERON:0007282!2.92e-11!83;UBERON:0009618!2.92e-11!83;UBERON:0007285!2.92e-11!83;UBERON:0003914!1.39e-10!118;UBERON:0004290!1.47e-10!70;UBERON:0000467!2.30e-10!625;UBERON:0000480!3.25e-10!626;UBERON:0000490!7.77e-10!138;UBERON:0001134!8.60e-10!61;UBERON:0002036!8.60e-10!61;UBERON:0003082!8.60e-10!61;UBERON:0002385!1.22e-09!63;UBERON:0001015!1.22e-09!63;UBERON:0000383!1.22e-09!63;UBERON:0000483!1.52e-09!309;UBERON:0000119!2.17e-09!312;UBERON:0000481!2.66e-09!347;UBERON:0004872!5.94e-09!84;UBERON:0001048!2.44e-08!168;UBERON:0000922!4.19e-08!612;UBERON:0000926!4.30e-08!448;UBERON:0004120!4.30e-08!448;UBERON:0006603!4.30e-08!448;UBERON:0000923!7.78e-08!604;UBERON:0005291!7.78e-08!604;UBERON:0006598!7.78e-08!604;UBERON:0002532!7.78e-08!604;UBERON:0002050!9.88e-08!605;UBERON:0005423!9.88e-08!605;UBERON:0001637!1.04e-07!42;UBERON:0003509!1.04e-07!42;UBERON:0004572!1.04e-07!42;UBERON:0000466!1.80e-07!126;UBERON:0000464!4.64e-07!104;UBERON:0004573!4.81e-07!33;UBERON:0004571!4.81e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.53e-07;33!UBERON:0004571;5.53e-07;33 | |ontology_enrichment_uberon_v019=UBERON:0004573;5.53e-07;33!UBERON:0004571;5.53e-07;33 | ||
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| ||
|short_description=p4@ITGB5 | |short_description=p4@ITGB5 | ||
}} | }} |
Latest revision as of 02:43, 20 September 2015
Short description: | p4@ITGB5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ITGB5_5end |
Coexpression cluster: | NA |
Association with transcript: | -118bp_to_ENST00000296181, NM_002213, uc003eho.2_5end |
EntrezGene: | ITGB5 |
HGNC: | 6160 |
UniProt: | P18084 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.92e-12 | 250 |
fibroblast | 3.73e-11 | 76 |
muscle precursor cell | 1.44e-09 | 58 |
myoblast | 1.44e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.44e-09 | 58 |
mesodermal cell | 1.96e-08 | 121 |
muscle cell | 2.10e-08 | 55 |
electrically responsive cell | 3.71e-08 | 61 |
electrically active cell | 3.71e-08 | 61 |
preadipocyte | 5.92e-08 | 12 |
smooth muscle cell | 3.38e-07 | 43 |
smooth muscle myoblast | 3.38e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 3.41e-12 | 199 |
epithelial vesicle | 1.84e-11 | 78 |
multilaminar epithelium | 3.89e-11 | 83 |
epithelial tube | 2.28e-10 | 117 |
trunk mesenchyme | 1.26e-09 | 122 |
unilaminar epithelium | 1.41e-09 | 148 |
somite | 2.12e-09 | 71 |
presomitic mesoderm | 2.12e-09 | 71 |
presumptive segmental plate | 2.12e-09 | 71 |
dermomyotome | 2.12e-09 | 71 |
trunk paraxial mesoderm | 2.12e-09 | 71 |
dense mesenchyme tissue | 2.90e-09 | 73 |
paraxial mesoderm | 5.44e-09 | 72 |
presumptive paraxial mesoderm | 5.44e-09 | 72 |
skeletal muscle tissue | 6.86e-09 | 62 |
striated muscle tissue | 6.86e-09 | 62 |
myotome | 6.86e-09 | 62 |
muscle tissue | 9.10e-09 | 64 |
musculature | 9.10e-09 | 64 |
musculature of body | 9.10e-09 | 64 |
splanchnic layer of lateral plate mesoderm | 4.49e-08 | 83 |
artery | 5.72e-08 | 42 |
arterial blood vessel | 5.72e-08 | 42 |
arterial system | 5.72e-08 | 42 |
mesenchyme | 6.85e-08 | 160 |
entire embryonic mesenchyme | 6.85e-08 | 160 |
systemic artery | 1.57e-07 | 33 |
systemic arterial system | 1.57e-07 | 33 |
epithelium | 5.45e-07 | 306 |
cell layer | 6.35e-07 | 309 |