FFCP PHASE1:Hg19::chr6:32936234..32936245,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3108 | |EntrezGene=3108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4934 | |HGNC=4934 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000464392_5end | |association_with_transcript=-13bp_to_ENST00000464392_5end | ||
|cluster_id=chr6:32936234..32936245,- | |||
|description=CAGE_peak_7_at_HLA-DMA_5end | |description=CAGE_peak_7_at_HLA-DMA_5end | ||
|id=chr6:32936234..32936245,- | |id=chr6:32936234..32936245,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002363;3.95e-15;2!CL:0000346;8.18e-10;3!CL:1000428;8.18e-10;3!CL:0000236;1.66e-08;13!CL:0002550;5.58e-08;1!CL:0002591;5.58e-08;1!CL:0000945;7.78e-07;24 | |ontology_enrichment_celltype_v019=CL:0002363;3.95e-15;2!CL:0000346;8.18e-10;3!CL:1000428;8.18e-10;3!CL:0000236;1.66e-08;13!CL:0002550;5.58e-08;1!CL:0002591;5.58e-08;1!CL:0000945;7.78e-07;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0002363,3.97e-15,2;CL:0000008,3.97e-15,2;CL:0000346,5.74e-10,3;CL:1000428,5.74e-10,3;CL:0002550,3.34e-08,1;CL:0000236,6.93e-08,14;CL:0002591,9.94e-08,1;CL:0000945,9.22e-07,24;CL:0000826,9.22e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000008;3.95e-15;2!UBERON:0010227;2.04e-08;1!UBERON:0005425;5.58e-08;1 | |ontology_enrichment_development_v019=CL:0000008;3.95e-15;2!UBERON:0010227;2.04e-08;1!UBERON:0005425;5.58e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4960;5.58e-08;1!DOID:0070004;5.58e-08;1 | |ontology_enrichment_disease_v019=DOID:4960;5.58e-08;1!DOID:0070004;5.58e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:4960,1.14e-07,1;DOID:0070004,1.14e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.47e-08!115 | |ontology_enrichment_uberon=UBERON:0007023!8.47e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0003566;3.95e-15;2!UBERON:0001777;3.95e-15;2!UBERON:0000412;8.18e-10;3!UBERON:0001992;8.18e-10;3!UBERON:0002079;2.04e-08;1!UBERON:0003891;5.40e-08;4!UBERON:0000964;5.40e-08;4!UBERON:0010409;5.40e-08;4!UBERON:0000941;5.58e-08;1!UBERON:0001785;5.58e-08;1!UBERON:0002464;5.58e-08;1!UBERON:0004904;5.58e-08;1!UBERON:0001021;5.58e-08;1!UBERON:0010313;9.52e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0003566;3.95e-15;2!UBERON:0001777;3.95e-15;2!UBERON:0000412;8.18e-10;3!UBERON:0001992;8.18e-10;3!UBERON:0002079;2.04e-08;1!UBERON:0003891;5.40e-08;4!UBERON:0000964;5.40e-08;4!UBERON:0010409;5.40e-08;4!UBERON:0000941;5.58e-08;1!UBERON:0001785;5.58e-08;1!UBERON:0002464;5.58e-08;1!UBERON:0004904;5.58e-08;1!UBERON:0001021;5.58e-08;1!UBERON:0010313;9.52e-07;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003566,3.97e-15,2;UBERON:0001777,3.97e-15,2;UBERON:0000412,5.74e-10,3;UBERON:0001992,5.74e-10,3;UBERON:0002079,2.19e-08,1;UBERON:0000941,4.71e-08,1;UBERON:0001785,4.71e-08,1;UBERON:0002464,4.71e-08,1;UBERON:0004904,4.71e-08,1;UBERON:0001021,4.71e-08,1;UBERON:0003902,4.71e-08,1;UBERON:0005425,4.71e-08,1;UBERON:0003891,5.41e-08,4;UBERON:0000964,5.41e-08,4;UBERON:0010409,5.41e-08,4;UBERON:0004348,5.41e-08,4;UBERON:0005427,5.41e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.273748850145768,0,0.382067028739756,0.328402357799783,0,0,0,0,0,0,0,0.0774672005803016,0.568676929949686,0,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0.211255286311942,0.212604299965044,0.209658645508376,0,0.150176892841506,0,0,0,0.365328307529268,0,3.82297027883492,0.889509253863555,0.426730222566507,0.800791974072025,1.14950487990897,0.661044872784862,1.90810750907073,1.1384259382189,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0.270803863765016,0,0,0.164437904603676,0,0,0.14828656316206,0,0,0.226618685395132,0,0,0.253019692019503,0.318565414324097,0,0.950452044448374,0,0.511946444617674,0,0.236777252044017,0,1.20964045934839,0.534880391567015,0.289648807765598,0,0,0,0.361439152384566,0,1.15877215168659,0,0.973269740605272,0.472674085820339,0,0.790513071238134,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.417989933073621,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0.450445921933289,0,0.949265659568129,0.183201743930407,0,0,0,0,0,0.529636723252875,0.286836620748814,0.354668382198357,0,0,0,0.622422070799533,0,0,0.302714855289863,0,1.64025002283658,0,0,0,0,0.485618833104395,0,0,0.245668634623536,0,0,0,0,0.718618141816238,0.168336113954066,0,0,0.438977620880838,0.30648779579902,0.300476117813194,0,0,0.213557388818567,0.211931901159562,0,0.412210116953756,0,0,0.506328996723799,0.194874010322397,0,0.0920498986422993,0.161646056818812,0.355009592516614,0.10075209822764,0,0.193260853163297,0,0,0.121973706129595,0.132529768321485,0.232387885739037,0.207322110030741,0.252320850875628,0.36497735907583,1.56449532329816,0,1.38134921352481,0.464367928031979,0,0.118306800039844,0,0,0,0.217879444092406,0.237270619111097,0.404493924480493,0.392442930250692,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0.439001141634502,0,0,0,2.93227474779292,2.07986957055916,0,0,0.117408694235822,0.144366447761074,0,0.190254152234598,0,0,0,0.234004265139238,0.148631162288728,0,0,0.141775097242386,0.447792613514241,0,0,0.492663237895943,0.088048434013226,0.414656231081544,0.576479813667846,0.37872730027914,0,0,0,1.71072446022705,0,0,0,0.224262168690721,0,0,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0.718874566474748,0,0,0.144781306667579,0,0,0.336255431980582,0.394061520403854,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0.356857977594324,0,0.117141414992713,0,0,0,0,0,0,0.195801157462741,0,0.206768026122887,0,0,0,1.66435439510497,0.30239029332968,0,0,0,0,0.511707249066704,0,0,0,0,0.0821271560138091,0,1.27831416305955,0,0,0,0.459257792658427,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0,0.328014645699706,0,0.412164046590889,0.183138929636687,0,0,0,0,0,0.154048617114644,0,0,0,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0,1.02090169995667,0.30347334256665,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0.731140468893853,0,0,0,1.13008116620243,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0,0,0.7133421029625,0,0,0,0,0.349934720244983,0.192444225451024,0,0,0.188287601553558,0.43050537267123,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0.185803175125719,0.432807638929335,0.426851060090485,0,0,0,0,0,0,0.228234679033192,0.313359791546046,0,0,0.321176150207399,0,0.425846237690326,0,0.307240764308458,0,0,0.19538809540204,0.278406173895242,0,0,0,0,0.18714054040822,0,0.485442086998054,0,0,0.23874448473769,0.296964680832639,0,0,0.422008249231538,0,0.329607748453519,0.211125408127993,0.597743964753209,0.552567831062295,0,0,0.123084805461069,0,0,0.179021174675609,0.511572370226872,0,2.3948309234694,0,0,0.0927680981618513,0,0,0.174919999992391,0,0,0,0,0.344743373241465,0,0,0,0.361789315876224,1.52581736317083,0.331737779793674,0.295547618953547,0,0.10893846351899,0,0,0,0.23056390438806,1.52587995496613,0.325942115766024,0.31900115973192,0,0.533034776018635,0,0.156980256395025,0,0.451191321234361,0,0.335643173951685,0,0,0,0.163232808159148,0,0.216388639742091,0.995261931078505,0.176915129006678,0,0.593042257361244,0,0.208843899010911,0.471807930864739,0,0.468528891450678,0.729819156862664,0,0,0.394584402849391,1.20990716048664,0,0.126373159256976,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0.19351266257817,0.219267951258557,0.164230914106418,0.0969890164884194,0.0882561266915003,0,0.274083849293502,0.794858446811959,0.126621591911757,0.195551382734803,0,0.213452994739353,0,0,0.114536596165916,0.171594997861965,0.432164393964449,0.372757606696298,0,0,0,0,0,0,0.821432273351958,0,0,0,0.279282401272254,0.229160424011684,0,0.399358000997982,0.429226048136571,0.2231714574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| ||
|short_description=p7@HLA-DMA | |short_description=p7@HLA-DMA | ||
}} | }} |
Latest revision as of 04:34, 18 September 2015
Short description: | p7@HLA-DMA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_HLA-DMA_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_ENST00000464392_5end |
EntrezGene: | HLA-DMA |
HGNC: | 4934 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratocyte | 3.97e-15 | 2 |
migratory cranial neural crest cell | 3.97e-15 | 2 |
hair follicle dermal papilla cell | 5.74e-10 | 3 |
stem cell of epidermis | 5.74e-10 | 3 |
fibroblast of the conjuctiva | 3.34e-08 | 1 |
B cell | 6.93e-08 | 14 |
smooth muscle cell of the pulmonary artery | 9.94e-08 | 1 |
lymphocyte of B lineage | 9.22e-07 | 24 |
pro-B cell | 9.22e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
head connective tissue | 3.97e-15 | 2 |
substantia propria of cornea | 3.97e-15 | 2 |
dermal papilla | 5.74e-10 | 3 |
papillary layer of dermis | 5.74e-10 | 3 |
left cardiac atrium | 2.19e-08 | 1 |
cranial nerve II | 4.71e-08 | 1 |
cranial nerve | 4.71e-08 | 1 |
nerve trunk | 4.71e-08 | 1 |
nerve connecting eye with brain | 4.71e-08 | 1 |
nerve | 4.71e-08 | 1 |
retinal neural layer | 4.71e-08 | 1 |
presumptive neural retina | 4.71e-08 | 1 |
stroma | 5.41e-08 | 4 |
cornea | 5.41e-08 | 4 |
eye surface | 5.41e-08 | 4 |
optic eminence | 5.41e-08 | 4 |
corneal primordium | 5.41e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 1.14e-07 | 1 |
myeloma | 1.14e-07 | 1 |