FFCP PHASE1:Hg19::chr20:633833..633851,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:633833..633851,-
|short_description=p1@SRXN1
|description=CAGE_peak_1_at_SRXN1_5end
|association_with_transcript=38bp_to_NM_080725,uc002wea.2_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=140809 | |EntrezGene=140809 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16132 | |HGNC=16132 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BYN0 | |UniProt=Q9BYN0 | ||
|association_with_transcript=38bp_to_NM_080725,uc002wea.2_5end | |||
|cluster_id=chr20:633833..633851,- | |||
|coexpression_cluster_id=C1426 | |||
|description=CAGE_peak_1_at_SRXN1_5end | |||
|id=chr20:633833..633851,- | |||
|ontology_enrichment_celltype=CL:0000548!9.16e-15!679;CL:0000004!9.16e-15!679;CL:0000255!9.16e-15!679;CL:0000066!6.79e-14!254;CL:0000012!1.05e-13!682;CL:0002194!3.02e-13!63;CL:0000576!3.02e-13!63;CL:0000040!3.02e-13!63;CL:0000559!3.02e-13!63;CL:0000766!9.01e-13!76;CL:0002057!1.23e-12!42;CL:0000860!5.44e-12!45;CL:0002009!9.13e-12!65;CL:0000839!1.49e-11!70;CL:0000063!2.55e-10!578;CL:0000220!3.25e-09!246;CL:0000557!6.01e-09!71;CL:0002321!1.04e-08!248;CL:0000222!1.14e-08!119;CL:0000003!1.40e-07!722;CL:0002371!2.78e-07!591;CL:0000144!4.57e-07!625;CL:0000076!4.70e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.40e-16;33!CL:0002057;1.40e-16;33!CL:0000473;7.17e-15;39!CL:0000234;7.17e-15;39!CL:0000576;5.31e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.49e-14,48;CL:0000234,5.49e-14,48;CL:0000066,1.05e-13,253;CL:0002194,1.34e-13,59;CL:0000576,1.34e-13,59;CL:0000040,1.34e-13,59;CL:0000559,1.34e-13,59;CL:0000766,5.28e-13,72;CL:0000860,1.23e-12,42;CL:0002057,1.23e-12,42;CL:0002009,4.91e-12,61;CL:0000839,8.84e-12,66;CL:0000557,4.51e-09,67;CL:0002321,5.15e-09,250;CL:0000222,5.17e-09,121;CL:0000076,5.51e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002057;6.44e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.17e-21!448;UBERON:0004120!2.17e-21!448;UBERON:0006603!2.17e-21!448;UBERON:0000467!1.23e-12!625;UBERON:0000468!1.71e-12!659;UBERON:0000480!1.99e-12!626;UBERON:0000923!2.32e-12!604;UBERON:0005291!2.32e-12!604;UBERON:0006598!2.32e-12!604;UBERON:0002532!2.32e-12!604;UBERON:0002050!3.67e-12!605;UBERON:0005423!3.67e-12!605;UBERON:0002204!3.86e-11!167;UBERON:0000922!6.61e-11!612;UBERON:0002100!2.00e-10!216;UBERON:0003914!9.80e-10!118;UBERON:0003104!1.63e-09!238;UBERON:0009142!1.63e-09!238;UBERON:0003081!3.59e-09!216;UBERON:0002371!6.50e-09!80;UBERON:0005256!1.25e-08!143;UBERON:0000062!3.00e-08!511;UBERON:0004765!5.47e-08!101;UBERON:0001434!5.47e-08!101;UBERON:0001474!7.50e-08!86;UBERON:0002405!2.26e-07!115;UBERON:0000490!4.59e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,7.06e-12,167;UBERON:0000926,1.55e-11,315;UBERON:0004120,1.55e-11,315;UBERON:0006603,1.55e-11,315;UBERON:0002100,1.19e-10,199;UBERON:0000922,1.33e-10,592;UBERON:0005423,1.53e-10,581;UBERON:0003914,1.48e-09,117;UBERON:0000923,1.93e-09,560;UBERON:0010316,1.93e-09,560;UBERON:0005291,1.93e-09,560;UBERON:0006598,1.93e-09,560;UBERON:0010317,1.93e-09,560;UBERON:0002532,1.93e-09,560;UBERON:0002050,3.14e-09,564;UBERON:0002371,5.30e-09,76;UBERON:0001434,1.45e-08,100;UBERON:0003104,2.25e-08,160;UBERON:0009142,2.25e-08,160;UBERON:0004765,2.35e-08,90;UBERON:0003081,2.92e-08,203;UBERON:0001474,6.79e-08,82;UBERON:0005256,1.43e-07,122;UBERON:0000490,2.70e-07,148 | |||
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| ||
|short_description=p1@SRXN1 | |||
}} | }} |
Latest revision as of 15:45, 17 September 2015
Short description: | p1@SRXN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SRXN1_5end |
Coexpression cluster: | C1426_CD14_bile_mucinous_lung_large_glioblastoma_nonsmall |
Association with transcript: | 38bp_to_NM_080725, uc002wea.2_5end |
EntrezGene: | SRXN1 |
HGNC: | 16132 |
UniProt: | Q9BYN0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.49e-14 | 48 |
phagocyte | 5.49e-14 | 48 |
epithelial cell | 1.05e-13 | 253 |
monopoietic cell | 1.34e-13 | 59 |
monocyte | 1.34e-13 | 59 |
monoblast | 1.34e-13 | 59 |
promonocyte | 1.34e-13 | 59 |
myeloid leukocyte | 5.28e-13 | 72 |
classical monocyte | 1.23e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.23e-12 | 42 |
macrophage dendritic cell progenitor | 4.91e-12 | 61 |
myeloid lineage restricted progenitor cell | 8.84e-12 | 66 |
granulocyte monocyte progenitor cell | 4.51e-09 | 67 |
embryonic cell | 5.15e-09 | 250 |
mesodermal cell | 5.17e-09 | 121 |
squamous epithelial cell | 5.51e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 7.06e-12 | 167 |
mesoderm | 1.55e-11 | 315 |
mesoderm-derived structure | 1.55e-11 | 315 |
presumptive mesoderm | 1.55e-11 | 315 |
trunk | 1.19e-10 | 199 |
embryo | 1.33e-10 | 592 |
developing anatomical structure | 1.53e-10 | 581 |
epithelial tube | 1.48e-09 | 117 |
germ layer | 1.93e-09 | 560 |
germ layer / neural crest | 1.93e-09 | 560 |
embryonic tissue | 1.93e-09 | 560 |
presumptive structure | 1.93e-09 | 560 |
germ layer / neural crest derived structure | 1.93e-09 | 560 |
epiblast (generic) | 1.93e-09 | 560 |
embryonic structure | 3.14e-09 | 564 |
bone marrow | 5.30e-09 | 76 |
skeletal system | 1.45e-08 | 100 |
mesenchyme | 2.25e-08 | 160 |
entire embryonic mesenchyme | 2.25e-08 | 160 |
skeletal element | 2.35e-08 | 90 |
lateral plate mesoderm | 2.92e-08 | 203 |
bone element | 6.79e-08 | 82 |
trunk mesenchyme | 1.43e-07 | 122 |
unilaminar epithelium | 2.70e-07 | 148 |