FFCP PHASE1:Hg19::chr7:142499376..142499383,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:142499376..142499383,+ | |||
|coexpression_cluster_id=C419 | |coexpression_cluster_id=C419 | ||
|description=CAGE_peak_at_chr7:142499376..142499383,+ | |description=CAGE_peak_at_chr7:142499376..142499383,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000084!1.92e-15!25;CL:0000827!1.92e-15!25;CL:0000815!5.08e-09!2;CL:0000792!5.08e-09!2;CL:0002677!5.08e-09!2;CL:0000791!3.07e-08!18;CL:0000789!3.07e-08!18;CL:0002420!3.07e-08!18;CL:0002419!3.07e-08!18;CL:0000790!3.07e-08!18;CL:0000838!2.02e-07!52;CL:0000542!2.79e-07!53;CL:0000051!2.79e-07!53 | |ontology_enrichment_celltype=CL:0000084!1.92e-15!25;CL:0000827!1.92e-15!25;CL:0000815!5.08e-09!2;CL:0000792!5.08e-09!2;CL:0002677!5.08e-09!2;CL:0000791!3.07e-08!18;CL:0000789!3.07e-08!18;CL:0002420!3.07e-08!18;CL:0002419!3.07e-08!18;CL:0000790!3.07e-08!18;CL:0000838!2.02e-07!52;CL:0000542!2.79e-07!53;CL:0000051!2.79e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.06e-09;25 | |ontology_enrichment_celltype_v019=CL:0000084;5.06e-09;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,5.06e-09,25;CL:0000827,5.06e-09,25 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1036;1.59e-07;8 | |ontology_enrichment_disease_v019=DOID:1036;1.59e-07;8 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,1.59e-07,8 | |||
|ontology_enrichment_uberon=UBERON:0002370!1.66e-16!4;UBERON:0005058!1.66e-16!4;UBERON:0009113!1.66e-16!4;UBERON:0003295!1.66e-16!4;UBERON:0005562!1.66e-16!4;UBERON:0006834!3.07e-16!1;UBERON:0009722!3.48e-13!11;UBERON:0007690!3.48e-13!11;UBERON:0003351!2.49e-11!6;UBERON:0004177!7.64e-10!7;UBERON:0008814!7.90e-10!15;UBERON:0000974!3.77e-07!10;UBERON:0003408!3.77e-07!10;UBERON:0001042!3.77e-07!10;UBERON:0009145!3.77e-07!10 | |ontology_enrichment_uberon=UBERON:0002370!1.66e-16!4;UBERON:0005058!1.66e-16!4;UBERON:0009113!1.66e-16!4;UBERON:0003295!1.66e-16!4;UBERON:0005562!1.66e-16!4;UBERON:0006834!3.07e-16!1;UBERON:0009722!3.48e-13!11;UBERON:0007690!3.48e-13!11;UBERON:0003351!2.49e-11!6;UBERON:0004177!7.64e-10!7;UBERON:0008814!7.90e-10!15;UBERON:0000974!3.77e-07!10;UBERON:0003408!3.77e-07!10;UBERON:0001042!3.77e-07!10;UBERON:0009145!3.77e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.22e-98;2!UBERON:0005058;4.22e-98;2!UBERON:0009113;4.22e-98;2!UBERON:0004177;4.05e-40;5!UBERON:0005057;4.05e-40;5!UBERON:0000077;2.30e-08;27!UBERON:0002405;2.30e-08;27 | |ontology_enrichment_uberon_v019=UBERON:0002370;4.22e-98;2!UBERON:0005058;4.22e-98;2!UBERON:0009113;4.22e-98;2!UBERON:0004177;4.05e-40;5!UBERON:0005057;4.05e-40;5!UBERON:0000077;2.30e-08;27!UBERON:0002405;2.30e-08;27 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.47e-50,4;UBERON:0005058,8.47e-50,4;UBERON:0009113,8.47e-50,4;UBERON:0003295,8.47e-50,4;UBERON:0005562,8.47e-50,4;UBERON:0003351,1.17e-33,6;UBERON:0004177,4.86e-29,7;UBERON:0005057,4.86e-29,7;UBERON:0000974,1.04e-20,10;UBERON:0003408,1.04e-20,10;UBERON:0001042,1.04e-20,10;UBERON:0009145,1.04e-20,10;UBERON:0006562,6.17e-19,11;UBERON:0009722,6.17e-19,11;UBERON:0007690,6.17e-19,11;UBERON:0008814,5.09e-12,18;UBERON:0001557,1.91e-11,19;UBERON:0004807,4.21e-08,28;UBERON:0000077,7.40e-08,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0.267540828089713,0,0,0,0.34362744548263,0,0.318565414324097,0,0,0,0.255973222308837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0550850708596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06579894587209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55013383606415,1.11734485732544,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0.267540828089713,0,0,0,0.34362744548263,0,0.318565414324097,0,0,0,0.255973222308837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0550850708596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06579894587209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55013383606415,1.11734485732544,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr7:142499376..142499383,+ | |short_description=p@chr7:142499376..142499383,+ | ||
}} | }} |
Latest revision as of 06:59, 31 July 2015
Short description: | p@chr7:142499376..142499383, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:142499376..142499383, + |
Coexpression cluster: | C419_acute_chronic_thymus_xeroderma_Burkitt_Hodgkin_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.06e-09 | 25 |
pro-T cell | 5.06e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.47e-50 | 4 |
hemolymphoid system gland | 8.47e-50 | 4 |
thymic region | 8.47e-50 | 4 |
pharyngeal gland | 8.47e-50 | 4 |
thymus primordium | 8.47e-50 | 4 |
pharyngeal epithelium | 1.17e-33 | 6 |
hemopoietic organ | 4.86e-29 | 7 |
immune organ | 4.86e-29 | 7 |
neck | 1.04e-20 | 10 |
gland of gut | 1.04e-20 | 10 |
chordate pharynx | 1.04e-20 | 10 |
pharyngeal region of foregut | 1.04e-20 | 10 |
pharynx | 6.17e-19 | 11 |
entire pharyngeal arch endoderm | 6.17e-19 | 11 |
early pharyngeal endoderm | 6.17e-19 | 11 |
pharyngeal arch system | 5.09e-12 | 18 |
upper respiratory tract | 1.91e-11 | 19 |
respiratory system epithelium | 4.21e-08 | 28 |
mixed endoderm/mesoderm-derived structure | 7.40e-08 | 29 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.59e-07 | 8 |