FFCP PHASE1:Hg19::chr7:129421935..129421976,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:129421935..129421976,+ | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_at_chr7:129421935..129421976,+ | |description=CAGE_peak_at_chr7:129421935..129421976,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002535!3.62e-12!2;CL:0002579!1.30e-08!3 | |ontology_enrichment_celltype=CL:0002535!3.62e-12!2;CL:0002579!1.30e-08!3 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.89e-53;3 | |ontology_enrichment_development_v019=UBERON:0003056;4.89e-53;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003296!4.37e-50!4;UBERON:0010133!4.37e-50!4;UBERON:0001905!4.00e-45!2;UBERON:0002757!4.00e-45!2;UBERON:0010134!4.00e-45!2;UBERON:0002784!4.00e-45!2;UBERON:0005408!4.00e-45!2;UBERON:0001899!4.00e-45!2;UBERON:0001894!5.13e-29!7;UBERON:0006222!5.13e-29!7;UBERON:0000966!1.13e-18!5;UBERON:0005388!1.13e-18!5;UBERON:0001802!1.13e-18!5;UBERON:0000007!2.59e-12!2;UBERON:0006955!3.62e-12!2;UBERON:0004801!3.62e-12!2;UBERON:0000970!1.12e-10!20;UBERON:0002104!3.35e-10!21;UBERON:0000020!2.28e-09!23;UBERON:0003056!4.18e-09!61;UBERON:0001032!5.28e-09!24;UBERON:0004456!5.28e-09!24 | |ontology_enrichment_uberon=UBERON:0003296!4.37e-50!4;UBERON:0010133!4.37e-50!4;UBERON:0001905!4.00e-45!2;UBERON:0002757!4.00e-45!2;UBERON:0010134!4.00e-45!2;UBERON:0002784!4.00e-45!2;UBERON:0005408!4.00e-45!2;UBERON:0001899!4.00e-45!2;UBERON:0001894!5.13e-29!7;UBERON:0006222!5.13e-29!7;UBERON:0000966!1.13e-18!5;UBERON:0005388!1.13e-18!5;UBERON:0001802!1.13e-18!5;UBERON:0000007!2.59e-12!2;UBERON:0006955!3.62e-12!2;UBERON:0004801!3.62e-12!2;UBERON:0000970!1.12e-10!20;UBERON:0002104!3.35e-10!21;UBERON:0000020!2.28e-09!23;UBERON:0003056!4.18e-09!61;UBERON:0001032!5.28e-09!24;UBERON:0004456!5.28e-09!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;3.49e-79;2!UBERON:0002757;3.49e-79;2!UBERON:0010134;3.49e-79;2!UBERON:0005408;3.49e-79;2!UBERON:0001899;3.49e-79;2!UBERON:0003296;2.71e-40;4!UBERON:0010133;2.71e-40;4!UBERON:0002784;2.71e-40;4!UBERON:0000966;2.34e-32;5!UBERON:0005388;2.34e-32;5!UBERON:0001802;2.34e-32;5!UBERON:0001894;1.44e-23;7!UBERON:0000970;1.34e-18;20!UBERON:0002104;9.30e-18;21!UBERON:0000020;2.71e-16;23!UBERON:0001032;1.19e-15;24!UBERON:0004456;1.19e-15;24!UBERON:0000019;2.46e-09;19!UBERON:0000047;2.46e-09;19!UBERON:0004088;2.46e-09;19!UBERON:0010230;2.46e-09;19!UBERON:0001456;1.53e-08;21 | |ontology_enrichment_uberon_v019=UBERON:0001905;3.49e-79;2!UBERON:0002757;3.49e-79;2!UBERON:0010134;3.49e-79;2!UBERON:0005408;3.49e-79;2!UBERON:0001899;3.49e-79;2!UBERON:0003296;2.71e-40;4!UBERON:0010133;2.71e-40;4!UBERON:0002784;2.71e-40;4!UBERON:0000966;2.34e-32;5!UBERON:0005388;2.34e-32;5!UBERON:0001802;2.34e-32;5!UBERON:0001894;1.44e-23;7!UBERON:0000970;1.34e-18;20!UBERON:0002104;9.30e-18;21!UBERON:0000020;2.71e-16;23!UBERON:0001032;1.19e-15;24!UBERON:0004456;1.19e-15;24!UBERON:0000019;2.46e-09;19!UBERON:0000047;2.46e-09;19!UBERON:0004088;2.46e-09;19!UBERON:0010230;2.46e-09;19!UBERON:0001456;1.53e-08;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.49e-79,2;UBERON:0002757,3.49e-79,2;UBERON:0010134,3.49e-79,2;UBERON:0005408,3.49e-79,2;UBERON:0001899,3.49e-79,2;UBERON:0003296,2.71e-40,4;UBERON:0010133,2.71e-40,4;UBERON:0002784,2.71e-40,4;UBERON:0000966,3.55e-27,6;UBERON:0005388,3.55e-27,6;UBERON:0001802,3.55e-27,6;UBERON:0001894,1.44e-23,7;UBERON:0006222,1.44e-23,7;UBERON:0000970,9.30e-18,21;UBERON:0002104,9.30e-18,21;UBERON:0000020,1.19e-15,24;UBERON:0001032,1.19e-15,24;UBERON:0004456,1.19e-15,24;UBERON:0003056,7.02e-11,61;UBERON:0000019,6.42e-09,20;UBERON:0000047,6.42e-09,20;UBERON:0010312,6.42e-09,20;UBERON:0004088,6.42e-09,20;UBERON:0010230,6.42e-09,20;UBERON:0003072,6.42e-09,20;UBERON:0004128,6.42e-09,20;UBERON:0003071,6.42e-09,20;UBERON:0003075,2.75e-08,82;UBERON:0007284,2.75e-08,82;UBERON:0001456,3.39e-08,22;UBERON:0002346,6.20e-08,86 | |||
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|short_description=p@chr7:129421935..129421976,+ | |short_description=p@chr7:129421935..129421976,+ | ||
}} | }} |
Latest revision as of 05:55, 31 July 2015
Short description: | p@chr7:129421935..129421976, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:129421935..129421976, + |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 3.49e-79 | 2 |
regional part of epithalamus | 3.49e-79 | 2 |
secretory circumventricular organ | 3.49e-79 | 2 |
circumventricular organ | 3.49e-79 | 2 |
epithalamus | 3.49e-79 | 2 |
gland of diencephalon | 2.71e-40 | 4 |
neuroendocrine gland | 2.71e-40 | 4 |
regional part of diencephalon | 2.71e-40 | 4 |
retina | 3.55e-27 | 6 |
photoreceptor array | 3.55e-27 | 6 |
posterior segment of eyeball | 3.55e-27 | 6 |
diencephalon | 1.44e-23 | 7 |
future diencephalon | 1.44e-23 | 7 |
eye | 9.30e-18 | 21 |
visual system | 9.30e-18 | 21 |
sense organ | 1.19e-15 | 24 |
sensory system | 1.19e-15 | 24 |
entire sense organ system | 1.19e-15 | 24 |
pre-chordal neural plate | 7.02e-11 | 61 |
camera-type eye | 6.42e-09 | 20 |
simple eye | 6.42e-09 | 20 |
immature eye | 6.42e-09 | 20 |
ocular region | 6.42e-09 | 20 |
eyeball of camera-type eye | 6.42e-09 | 20 |
optic cup | 6.42e-09 | 20 |
optic vesicle | 6.42e-09 | 20 |
eye primordium | 6.42e-09 | 20 |
neural plate | 2.75e-08 | 82 |
presumptive neural plate | 2.75e-08 | 82 |
face | 3.39e-08 | 22 |
neurectoderm | 6.20e-08 | 86 |