FFCP PHASE1:Hg19::chr1:183208543..183208558,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3918 | |EntrezGene=3918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |HGNC=6493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-77bp_to_ENST00000461729_5end | |association_with_transcript=-77bp_to_ENST00000461729_5end | ||
|cluster_id=chr1:183208543..183208558,+ | |||
|coexpression_cluster_id=C268 | |coexpression_cluster_id=C268 | ||
|description=CAGE_peak_8_at_LAMC2_5end | |description=CAGE_peak_8_at_LAMC2_5end | ||
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|ontology_enrichment_celltype=CL:0002076!3.59e-18!43;CL:0002368!2.18e-15!13;CL:0000066!1.70e-14!254;CL:0000223!6.16e-14!59;CL:0002202!2.71e-08!9;CL:0002632!2.71e-08!9;CL:0002251!8.94e-08!21;CL:0002621!1.12e-07!3;CL:0000068!1.97e-07!3;CL:0000069!1.97e-07!3;CL:0000307!1.97e-07!3;CL:0000377!1.97e-07!3;CL:0002328!3.67e-07!3;CL:0000220!4.93e-07!246;CL:0002321!6.91e-07!248 | |ontology_enrichment_celltype=CL:0002076!3.59e-18!43;CL:0002368!2.18e-15!13;CL:0000066!1.70e-14!254;CL:0000223!6.16e-14!59;CL:0002202!2.71e-08!9;CL:0002632!2.71e-08!9;CL:0002251!8.94e-08!21;CL:0002621!1.12e-07!3;CL:0000068!1.97e-07!3;CL:0000069!1.97e-07!3;CL:0000307!1.97e-07!3;CL:0000377!1.97e-07!3;CL:0002328!3.67e-07!3;CL:0000220!4.93e-07!246;CL:0002321!6.91e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.42e-23;13!CL:0002076;2.10e-22;42!CL:0002621;1.25e-20;3!CL:0000307;1.02e-19;3!CL:0002536;9.75e-14;2!CL:0002159;7.85e-12;14!CL:0002202;1.54e-11;9!CL:0002632;1.54e-11;9!CL:0000240;2.49e-10;6!CL:0000311;2.49e-10;6!CL:0000079;2.49e-10;6!CL:0000237;2.49e-10;6!CL:0002166;4.19e-10;3!CL:0002231;1.01e-09;3!CL:0000349;3.21e-08;19!CL:0002251;5.23e-08;20!CL:0002336;1.04e-07;1!CL:0002261;1.04e-07;1!CL:0002252;1.04e-07;1!CL:0002170;1.04e-07;1!CL:0000244;1.44e-07;4!CL:0000731;1.44e-07;4!CL:0002327;2.66e-07;4!CL:0000362;3.64e-07;9 | |ontology_enrichment_celltype_v019=CL:0002368;1.42e-23;13!CL:0002076;2.10e-22;42!CL:0002621;1.25e-20;3!CL:0000307;1.02e-19;3!CL:0002536;9.75e-14;2!CL:0002159;7.85e-12;14!CL:0002202;1.54e-11;9!CL:0002632;1.54e-11;9!CL:0000240;2.49e-10;6!CL:0000311;2.49e-10;6!CL:0000079;2.49e-10;6!CL:0000237;2.49e-10;6!CL:0002166;4.19e-10;3!CL:0002231;1.01e-09;3!CL:0000349;3.21e-08;19!CL:0002251;5.23e-08;20!CL:0002336;1.04e-07;1!CL:0002261;1.04e-07;1!CL:0002252;1.04e-07;1!CL:0002170;1.04e-07;1!CL:0000244;1.44e-07;4!CL:0000731;1.44e-07;4!CL:0002327;2.66e-07;4!CL:0000362;3.64e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.83e-27,42;CL:0002368,1.17e-23,13;CL:0002621,1.64e-20,3;CL:0000068,9.59e-20,3;CL:0000069,9.59e-20,3;CL:0000307,9.59e-20,3;CL:0000377,9.59e-20,3;CL:0000223,3.96e-19,58;CL:0000066,1.29e-16,253;CL:0002536,5.44e-14,2;CL:0002159,6.27e-12,14;CL:0002202,1.63e-11,9;CL:0002632,1.63e-11,9;CL:0000240,2.58e-10,6;CL:0000311,2.58e-10,6;CL:0000079,2.58e-10,6;CL:0000237,2.58e-10,6;CL:0000036,2.58e-10,6;CL:0000357,2.58e-10,6;CL:0000114,2.58e-10,6;CL:0002166,4.02e-10,3;CL:0002231,9.30e-10,3;CL:0000349,3.07e-08,19;CL:0002251,6.19e-08,20;CL:0002252,8.51e-08,1;CL:0000244,1.35e-07,4;CL:0000731,1.35e-07,4;CL:0002336,1.99e-07,1;CL:0002261,1.99e-07,1;CL:0002170,1.99e-07,1;CL:0002327,2.50e-07,4;CL:0000362,3.02e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;1.02e-19;3!CL:0000223;1.58e-13;58!CL:0000357;2.49e-10;6!CL:0000114;2.49e-10;6 | |ontology_enrichment_development_v019=CL:0000377;1.02e-19;3!CL:0000223;1.58e-13;58!CL:0000357;2.49e-10;6!CL:0000114;2.49e-10;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.50e-10!14;UBERON:0000158!1.50e-10!14;UBERON:0004119!4.60e-08!169;UBERON:0000925!4.60e-08!169;UBERON:0006595!4.60e-08!169;UBERON:0001004!7.48e-08!72;UBERON:0001949!1.12e-07!3;UBERON:0000464!1.53e-07!104;UBERON:0000305!2.26e-07!7;UBERON:0004923!2.42e-07!57;UBERON:0004815!3.67e-07!3;UBERON:0002031!3.67e-07!3;UBERON:0000365!6.50e-07!5;UBERON:0000466!7.80e-07!126 | |ontology_enrichment_uberon=UBERON:0005631!1.50e-10!14;UBERON:0000158!1.50e-10!14;UBERON:0004119!4.60e-08!169;UBERON:0000925!4.60e-08!169;UBERON:0006595!4.60e-08!169;UBERON:0001004!7.48e-08!72;UBERON:0001949!1.12e-07!3;UBERON:0000464!1.53e-07!104;UBERON:0000305!2.26e-07!7;UBERON:0004923!2.42e-07!57;UBERON:0004815!3.67e-07!3;UBERON:0002031!3.67e-07!3;UBERON:0000365!6.50e-07!5;UBERON:0000466!7.80e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.25e-20;3!UBERON:0000486;1.03e-13;12!UBERON:0005631;2.11e-10;10!UBERON:0000158;2.11e-10;10!UBERON:0003929;3.89e-09;7!UBERON:0003126;9.31e-09;7!UBERON:0000305;9.31e-09;7!UBERON:0001005;9.31e-09;7!UBERON:0003729;2.71e-08;13!UBERON:0003350;4.75e-08;8!UBERON:0001828;4.75e-08;8!UBERON:0001708;8.80e-08;4!UBERON:0008895;8.80e-08;4!UBERON:0001911;2.66e-07;4!UBERON:0010371;5.07e-07;31!UBERON:0007196;5.68e-07;15!UBERON:0001558;5.68e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0001949;1.25e-20;3!UBERON:0000486;1.03e-13;12!UBERON:0005631;2.11e-10;10!UBERON:0000158;2.11e-10;10!UBERON:0003929;3.89e-09;7!UBERON:0003126;9.31e-09;7!UBERON:0000305;9.31e-09;7!UBERON:0001005;9.31e-09;7!UBERON:0003729;2.71e-08;13!UBERON:0003350;4.75e-08;8!UBERON:0001828;4.75e-08;8!UBERON:0001708;8.80e-08;4!UBERON:0008895;8.80e-08;4!UBERON:0001911;2.66e-07;4!UBERON:0010371;5.07e-07;31!UBERON:0007196;5.68e-07;15!UBERON:0001558;5.68e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.64e-20,3;UBERON:0005631,2.96e-11,14;UBERON:0000158,2.96e-11,14;UBERON:0003126,9.08e-09,7;UBERON:0001005,9.08e-09,7;UBERON:0000305,9.33e-09,7;UBERON:0004119,3.02e-08,160;UBERON:0000925,3.02e-08,160;UBERON:0006595,3.02e-08,160;UBERON:0003729,3.54e-08,13;UBERON:0003350,5.24e-08,8;UBERON:0001828,5.24e-08,8;UBERON:0001708,8.53e-08,4;UBERON:0008895,8.53e-08,4;UBERON:0004871,1.02e-07,8;UBERON:0001911,2.50e-07,4;UBERON:0005333,2.50e-07,4;UBERON:0008425,2.50e-07,4;UBERON:0005311,2.50e-07,4;UBERON:0001004,4.25e-07,74;UBERON:0007196,5.87e-07,15;UBERON:0001558,5.87e-07,15 | |||
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| ||
|short_description=p8@LAMC2 | |short_description=p8@LAMC2 | ||
}} | }} |
Latest revision as of 02:24, 19 September 2015
Short description: | p8@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | -77bp_to_ENST00000461729_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.64e-20 | 3 |
extraembryonic membrane | 2.96e-11 | 14 |
membranous layer | 2.96e-11 | 14 |
trachea | 9.08e-09 | 7 |
respiratory airway | 9.08e-09 | 7 |
amnion | 9.33e-09 | 7 |
endoderm-derived structure | 3.02e-08 | 160 |
endoderm | 3.02e-08 | 160 |
presumptive endoderm | 3.02e-08 | 160 |
mouth mucosa | 3.54e-08 | 13 |
epithelium of mucosa | 5.24e-08 | 8 |
gingiva | 5.24e-08 | 8 |
jaw skeleton | 8.53e-08 | 4 |
splanchnocranium | 8.53e-08 | 4 |
somatic layer of lateral plate mesoderm | 1.02e-07 | 8 |
mammary gland | 2.50e-07 | 4 |
mammary bud | 2.50e-07 | 4 |
mammary ridge | 2.50e-07 | 4 |
mammary placode | 2.50e-07 | 4 |
respiratory system | 4.25e-07 | 74 |
tracheobronchial tree | 5.87e-07 | 15 |
lower respiratory tract | 5.87e-07 | 15 |