FF:12227-129F4: Difference between revisions

Latest revision as of 18:35, 4 June 2020

Name:	nasal epithelial cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12574
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	nasal cavity
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell
cell line	NA
company	Promocell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005021

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12574		CAGE		DRX008572		DRR009444

Accession ID Hg19

Library id		BAM		CTSS
CNhs12574		DRZ000869		DRZ002254

Accession ID Hg38

Library id		BAM		CTSS
CNhs12574		DRZ012219		DRZ013604

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.215
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.21
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0491
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.086
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.276
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.163
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.351
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	1.333
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.222
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.086
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.21
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.247
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.126
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.53
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.016
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.21
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.457
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.253
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.00832
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.181
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12574

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.904
MA0003.1	MA0003.1	0.683
MA0004.1	MA0004.1	0.934
MA0006.1	MA0006.1	0.241
MA0007.1	MA0007.1	0.443
MA0009.1	MA0009.1	0.702
MA0014.1	MA0014.1	0.289
MA0017.1	MA0017.1	0.993
MA0018.2	MA0018.2	0.613
MA0019.1	MA0019.1	0.459
MA0024.1	MA0024.1	0.00182
MA0025.1	MA0025.1	0.659
MA0027.1	MA0027.1	0.587
MA0028.1	MA0028.1	8.88021e-5
MA0029.1	MA0029.1	0.98
MA0030.1	MA0030.1	0.123
MA0031.1	MA0031.1	0.288
MA0035.2	MA0035.2	0.985
MA0038.1	MA0038.1	0.984
MA0039.2	MA0039.2	0.029
MA0040.1	MA0040.1	0.423
MA0041.1	MA0041.1	0.267
MA0042.1	MA0042.1	0.292
MA0043.1	MA0043.1	0.0678
MA0046.1	MA0046.1	0.816
MA0047.2	MA0047.2	0.00756
MA0048.1	MA0048.1	0.138
MA0050.1	MA0050.1	1.12105e-4
MA0051.1	MA0051.1	4.00793e-4
MA0052.1	MA0052.1	0.169
MA0055.1	MA0055.1	0.0648
MA0057.1	MA0057.1	0.777
MA0058.1	MA0058.1	0.593
MA0059.1	MA0059.1	0.606
MA0060.1	MA0060.1	0.363
MA0061.1	MA0061.1	0.702
MA0062.2	MA0062.2	2.24324e-5
MA0065.2	MA0065.2	0.308
MA0066.1	MA0066.1	0.661
MA0067.1	MA0067.1	0.751
MA0068.1	MA0068.1	0.135
MA0069.1	MA0069.1	0.163
MA0070.1	MA0070.1	0.533
MA0071.1	MA0071.1	0.0413
MA0072.1	MA0072.1	0.208
MA0073.1	MA0073.1	0.785
MA0074.1	MA0074.1	0.646
MA0076.1	MA0076.1	6.82521e-7
MA0077.1	MA0077.1	0.917
MA0078.1	MA0078.1	0.31
MA0079.2	MA0079.2	0.447
MA0080.2	MA0080.2	0.757
MA0081.1	MA0081.1	0.277
MA0083.1	MA0083.1	0.212
MA0084.1	MA0084.1	0.054
MA0087.1	MA0087.1	0.631
MA0088.1	MA0088.1	1.08489e-4
MA0090.1	MA0090.1	0.0107
MA0091.1	MA0091.1	0.832
MA0092.1	MA0092.1	0.864
MA0093.1	MA0093.1	0.829
MA0099.2	MA0099.2	4.64864e-20
MA0100.1	MA0100.1	0.114
MA0101.1	MA0101.1	0.541
MA0102.2	MA0102.2	5.75053e-4
MA0103.1	MA0103.1	5.83322e-5
MA0104.2	MA0104.2	0.358
MA0105.1	MA0105.1	0.275
MA0106.1	MA0106.1	1.84286e-4
MA0107.1	MA0107.1	0.291
MA0108.2	MA0108.2	2.62589e-7
MA0111.1	MA0111.1	0.87
MA0112.2	MA0112.2	0.584
MA0113.1	MA0113.1	0.815
MA0114.1	MA0114.1	0.215
MA0115.1	MA0115.1	0.188
MA0116.1	MA0116.1	0.331
MA0117.1	MA0117.1	0.797
MA0119.1	MA0119.1	0.335
MA0122.1	MA0122.1	0.821
MA0124.1	MA0124.1	0.576
MA0125.1	MA0125.1	0.0347
MA0131.1	MA0131.1	0.978
MA0135.1	MA0135.1	0.0148
MA0136.1	MA0136.1	0.827
MA0137.2	MA0137.2	0.036
MA0138.2	MA0138.2	0.761
MA0139.1	MA0139.1	0.289
MA0140.1	MA0140.1	0.259
MA0141.1	MA0141.1	0.204
MA0142.1	MA0142.1	0.255
MA0143.1	MA0143.1	0.428
MA0144.1	MA0144.1	0.371
MA0145.1	MA0145.1	0.0122
MA0146.1	MA0146.1	0.197
MA0147.1	MA0147.1	0.282
MA0148.1	MA0148.1	0.0204
MA0149.1	MA0149.1	0.13
MA0150.1	MA0150.1	0.0209
MA0152.1	MA0152.1	0.235
MA0153.1	MA0153.1	0.596
MA0154.1	MA0154.1	0.919
MA0155.1	MA0155.1	0.797
MA0156.1	MA0156.1	0.0264
MA0157.1	MA0157.1	0.883
MA0159.1	MA0159.1	0.639
MA0160.1	MA0160.1	0.936
MA0162.1	MA0162.1	0.977
MA0163.1	MA0163.1	4.35471e-8
MA0164.1	MA0164.1	0.729
MA0258.1	MA0258.1	0.561
MA0259.1	MA0259.1	0.586

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12574

Novel motif	Logo	P-value
1	1	0.47
10	10	0.0289
100	100	0.0881
101	101	0.682
102	102	0.464
103	103	0.941
104	104	0.631
105	105	0.186
106	106	0.0197
107	107	0.00188
108	108	0.15
109	109	0.191
11	11	0.752
110	110	0.816
111	111	0.303
112	112	0.737
113	113	0.186
114	114	0.513
115	115	0.624
116	116	0.266
117	117	0.0204
118	118	0.294
119	119	0.908
12	12	0.813
120	120	0.205
121	121	0.39
122	122	0.0932
123	123	0.126
124	124	0.0449
125	125	0.645
126	126	0.488
127	127	0.0327
128	128	0.0119
129	129	0.692
13	13	0.749
130	130	0.251
131	131	0.399
132	132	0.934
133	133	0.496
134	134	0.638
135	135	0.0825
136	136	0.29
137	137	0.156
138	138	0.285
139	139	0.727
14	14	0.326
140	140	0.96
141	141	0.126
142	142	0.0231
143	143	0.564
144	144	0.258
145	145	0.802
146	146	0.00148
147	147	0.697
148	148	0.658
149	149	0.519
15	15	0.832
150	150	0.373
151	151	0.505
152	152	0.0772
153	153	0.0396
154	154	0.752
155	155	0.773
156	156	0.94
157	157	0.5
158	158	0.649
159	159	0.324
16	16	0.315
160	160	0.35
161	161	0.911
162	162	0.977
163	163	0.213
164	164	0.172
165	165	0.699
166	166	0.827
167	167	0.272
168	168	0.0665
169	169	0.719
17	17	0.288
18	18	0.0418
19	19	0.394
2	2	0.0995
20	20	0.425
21	21	0.625
22	22	0.792
23	23	0.92
24	24	0.374
25	25	0.765
26	26	0.476
27	27	0.934
28	28	0.814
29	29	0.634
3	3	0.706
30	30	0.0429
31	31	0.312
32	32	0.787
33	33	0.593
34	34	0.722
35	35	0.299
36	36	0.0499
37	37	0.441
38	38	0.962
39	39	0.253
4	4	0.442
40	40	0.33
41	41	0.517
42	42	0.671
43	43	0.61
44	44	0.376
45	45	0.0809
46	46	0.984
47	47	0.407
48	48	0.714
49	49	0.735
5	5	0.61
50	50	0.907
51	51	0.87
52	52	0.0415
53	53	0.278
54	54	0.235
55	55	0.982
56	56	0.464
57	57	0.81
58	58	0.84
59	59	0.573
6	6	0.0327
60	60	0.124
61	61	0.926
62	62	0.364
63	63	0.868
64	64	0.527
65	65	0.584
66	66	0.382
67	67	0.952
68	68	0.184
69	69	0.248
7	7	0.996
70	70	0.604
71	71	0.0403
72	72	0.403
73	73	0.891
74	74	0.127
75	75	0.24
76	76	0.391
77	77	0.16
78	78	0.823
79	79	0.514
8	8	0.396
80	80	0.0175
81	81	0.193
82	82	0.235
83	83	0.545
84	84	0.353
85	85	0.132
86	86	0.612
87	87	0.946
88	88	0.572
89	89	0.533
9	9	0.952
90	90	0.741
91	91	0.444
92	92	0.454
93	93	0.764
94	94	0.589
95	95	0.0398
96	96	0.517
97	97	0.239
98	98	0.942
99	99	0.432

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12574

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0104976 human nasal epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0104976 (human nasal epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005021
+|accession_numbers=CAGE;DRX008572;DRR009444;DRZ000869;DRZ002254;DRZ012219;DRZ013604
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:8096631..8096660,+!p1@GATA3!2.59!462.20!GATA3;;chr3:189507432..189507459,+!p1@TP63!2.19!155.52!TP63;;chr17:7493405..7493419,-!p1@SOX15!2.18!149.92!SOX15;;chr11:34642612..34642646,+!p1@EHF!2.05!110.11!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.84!76.52!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.72!51.01!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.69!55.36!BNC1;;chr13:73633131..73633149,+!p1@KLF5!1.62!413.68!KLF5;;chr1:6479968..6479986,-!p1@HES2!1.60!38.57!HES2;;chr15:101069113..101069169,-!p1@CERS3!1.56!35.46!CERS3;;chr5:134369905..134369972,-!p1@PITX1!1.52!48.52!PITX1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.12!NR4A3;;chr5:134369879..134369898,-!p2@PITX1!1.48!29.24!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.84!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.46!57.85!SOX15;;chr15:60884706..60884743,-!p1@RORA!1.45!136.86!RORA;;chr14:29235961..29236008,+!p1@FOXG1!1.36!21.77!FOXG1;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.53!ZNF750;;chr8:10588010..10588030,-!p1@SOX7!1.32!19.91!SOX7;;chr2:46524897..46524911,+!p2@EPAS1!1.30!51.63!EPAS1;;chr15:96874927..96874938,+!p8@NR2F2!1.28!37.95!NR2F2;;chr11:47400078..47400106,-!p1@SPI1!1.28!18.04!SPI1;;chr15:60884747..60884774,-!p3@RORA!1.23!38.57!RORA;;chr19:36391434..36391450,-!p1@NFKBID!1.23!31.10!NFKBID;;chr5:2751762..2751784,-!p1@IRX2!1.23!16.17!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.64!TFAP2A;;chr5:138643069..138643082,+!p13@MATR3!1.18!14.31!MATR3;;chr3:111314186..111314204,-!p1@ZBED2!1.18!14.31!ZBED2;;chr12:66218255..66218304,+!p3@HMGA2!1.17!36.70!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.14!21.15!FOXQ1;;chr7:31380292..31380351,-!p1@NEUROD6!1.13!12.44!NEUROD6;;chr1:244214577..244214593,+!p1@ZNF238!1.13!12.44!ZNF238;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.66!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.12!13.69!ZNF385A;;chr9:102584128..102584144,+!p3@NR4A3!1.11!23.02!NR4A3;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.82!GRHL2;;chr2:16080659..16080685,+!p1@MYCN!1.11!11.82!MYCN;;chr12:81101472..81101483,+!p2@MYF6!1.11!11.82!MYF6;;chr7:28448965..28448994,+!p2@CREB5!1.09!39.81!CREB5;;chr5:153857778..153857794,-!p1@HAND1!1.09!11.20!HAND1;;chr12:96588368..96588394,+!p3@ELK3!1.07!29.24!ELK3;;chr5:3595934..3595957,+!p2@IRX1!1.06!10.58!IRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.06!10.58!MEOX2;;chr14:75988831..75988847,+!p2@BATF!1.06!10.58!BATF;;chr18:22932080..22932170,-!p1@ZNF521!1.05!44.17!ZNF521;;chr2:145277882..145277967,-!p3@ZEB2!1.03!16.80!ZEB2;;chr2:68592406..68592424,+!p1@PLEK!1.01!9.33!PLEK;;chr3:181429704..181429722,+!p1@SOX2!1.01!9.33!SOX2;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.33!HAND2;;chr5:3595961..3595975,+!p3@IRX1!1.01!9.33!IRX1;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.33!PRRX1;;chr20:22564895..22564910,-!p1@FOXA2!1.01!9.33!FOXA2;;chr10:131762504..131762555,-!p1@EBF3!1.01!9.33!EBF3;;chr11:129245526..129245553,+!p1@BARX2!1.01!9.33!BARX2;;chr11:34645791..34645836,+!p3@EHF!1.01!9.33!EHF;;chr4:103422457..103422469,+!p3@NFKB1!0.99!14.31!NFKB1;;chr2:10091815..10091864,+!p1@GRHL1!0.99!11.82!GRHL1;;chr2:5832508..5832524,+!p1@SOX11!0.99!8.71!SOX11;;chr2:63277948..63277974,+!p1@OTX1!0.99!8.71!OTX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.99!8.71!PKNOX2;;chr1:201979743..201979762,+!p1@ELF3!0.99!8.71!ELF3;;chr1:203055129..203055147,-!p1@MYOG!0.99!8.71!MYOG;;chr21:39870339..39870443,-!p1@ERG!0.99!8.71!ERG;;chr6:10419768..10419819,-!p6@TFAP2A!0.99!8.71!TFAP2A;;chr17:46132044..46132080,+!p4@NFE2L1!0.99!8.71!NFE2L1;;chr6:15246200..15246214,+!p2@JARID2!0.98!24.26!JARID2;;chr6:45296048..45296082,+!p1@RUNX2!0.96!9.33!RUNX2;;chr3:189507460..189507471,+!p3@TP63!0.96!8.09!TP63;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.09!BNC1;;chr2:70142232..70142251,+!p1@MXD1!0.93!44.17!MXD1;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.99!RUNX1;;chr17:53342311..53342400,+!p1@HLF!0.93!8.71!HLF;;chr11:34642656..34642667,+!p2@EHF!0.93!7.46!EHF;;chr1:209979449..209979460,-!p3@IRF6!0.93!7.46!IRF6;;chr19:45971246..45971265,+!p1@FOSB!0.92!141.21!FOSB;;chr12:27485762..27485776,+!p3@ARNTL2!0.92!20.53!ARNTL2;;chr5:158526459..158526481,-!p2@EBF1!0.90!9.33!EBF1;;chr3:169381420..169381535,-!p1@MECOM!0.89!8.09!MECOM;;chr2:45168834..45168847,+!p2@SIX3!0.89!6.84!SIX3;;chr6:10415484..10415508,-!p3@TFAP2A!0.89!6.84!TFAP2A;;chr7:50343634..50343717,+!p2@IKZF1!0.89!6.84!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!0.89!6.84!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!0.89!6.84!ZNF385A;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.84!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.88!65.32!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.39!TWIST2;;chr13:72441315..72441454,-!p1@DACH1!0.88!13.69!DACH1;;chr2:208030647..208030689,-!p1@KLF7!0.87!56.61!KLF7;;chr1:23696308..23696339,-!p2@ZNF436!0.87!14.31!ZNF436;;chr14:75988771..75988826,+!p1@BATF!0.87!8.71!BATF;;chr20:22565185..22565223,-!p3@FOXA2!0.86!6.22!FOXA2;;chr10:114710430..114710470,+!p30@TCF7L2!0.86!6.22!TCF7L2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.86!6.22!HOXC5;;chr7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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002167;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350
 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor2.CNhs12574.12227-129F4.hg38.nobarcode.ctss.bed.gz
 |id=FF:12227-129F4
 |is_a=EFO:0002091;;FF:0104976
 |is_obsolete=
+|library_id=CNhs12574
+|library_id_phase_based=2:CNhs12574
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12227
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12227
 |name=nasal epithelial cells, donor2
 |namespace=
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12574,LSID917,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=8.082
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 84: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12227-129F4;search_select_hide=table117:FF:12227-129F4
 }}

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FF:12227-129F4: Difference between revisions

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Latest revision as of 18:35, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0